Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4606

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4603 and Psyr_4604 are separated by 154 nucleotidesPsyr_4604 and Psyr_4605 are separated by 97 nucleotidesPsyr_4605 and Psyr_4606 are separated by 105 nucleotidesPsyr_4606 and Psyr_4607 are separated by 937 nucleotides Psyr_4603: Psyr_4603 - phage repressor protein, Serine peptidase, MEROPS family S24, at 5,460,691 to 5,461,380 _4603 Psyr_4604: Psyr_4604 - hypothetical protein, at 5,461,535 to 5,461,783 _4604 Psyr_4605: Psyr_4605 - transcriptional regulator PrtN, putative, at 5,461,881 to 5,462,147 _4605 Psyr_4606: Psyr_4606 - Outer membrane autotransporter barrel, at 5,462,253 to 5,464,175 _4606 Psyr_4607: Psyr_4607 - Helix-turn-helix, Fis-type, at 5,465,113 to 5,465,412 _4607 Position (kb) 5462 5463 5464 5465Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5461.473 kb on + strandat 5461.473 kb on + strandat 5461.473 kb on + strandat 5461.473 kb on + strandat 5461.474 kb on - strandat 5461.474 kb on - strandat 5461.474 kb on - strandat 5461.474 kb on - strandat 5461.574 kb on + strand, within Psyr_4604at 5461.574 kb on + strand, within Psyr_4604at 5461.574 kb on + strand, within Psyr_4604at 5461.575 kb on - strand, within Psyr_4604at 5461.575 kb on - strand, within Psyr_4604at 5461.606 kb on + strand, within Psyr_4604at 5461.606 kb on + strand, within Psyr_4604at 5461.607 kb on - strand, within Psyr_4604at 5461.767 kb on - strandat 5461.840 kb on + strandat 5461.846 kb on - strandat 5461.916 kb on - strand, within Psyr_4605at 5461.916 kb on - strand, within Psyr_4605at 5461.916 kb on - strand, within Psyr_4605at 5462.092 kb on - strand, within Psyr_4605at 5462.112 kb on + strand, within Psyr_4605at 5462.112 kb on + strand, within Psyr_4605at 5462.112 kb on + strand, within Psyr_4605at 5462.112 kb on + strand, within Psyr_4605at 5462.112 kb on + strand, within Psyr_4605at 5462.113 kb on - strand, within Psyr_4605at 5462.113 kb on - strand, within Psyr_4605at 5462.113 kb on - strand, within Psyr_4605at 5462.113 kb on - strand, within Psyr_4605at 5462.213 kb on + strandat 5462.213 kb on + strandat 5462.213 kb on + strandat 5462.213 kb on + strandat 5462.214 kb on - strandat 5462.214 kb on - strandat 5462.408 kb on + strandat 5462.408 kb on + strandat 5462.577 kb on - strand, within Psyr_4606at 5462.686 kb on - strand, within Psyr_4606at 5462.686 kb on - strand, within Psyr_4606at 5462.727 kb on + strand, within Psyr_4606at 5462.728 kb on - strand, within Psyr_4606at 5462.728 kb on - strand, within Psyr_4606at 5462.728 kb on - strand, within Psyr_4606at 5462.730 kb on + strand, within Psyr_4606at 5462.850 kb on + strand, within Psyr_4606at 5462.850 kb on + strand, within Psyr_4606at 5462.851 kb on - strand, within Psyr_4606at 5462.882 kb on + strand, within Psyr_4606at 5462.883 kb on - strand, within Psyr_4606at 5462.957 kb on - strand, within Psyr_4606at 5462.957 kb on - strand, within Psyr_4606at 5462.957 kb on - strand, within Psyr_4606at 5463.095 kb on + strand, within Psyr_4606at 5463.096 kb on - strand, within Psyr_4606at 5463.096 kb on - strand, within Psyr_4606at 5463.096 kb on - strand, within Psyr_4606at 5463.096 kb on - strand, within Psyr_4606at 5463.210 kb on + strand, within Psyr_4606at 5463.211 kb on - strand, within Psyr_4606at 5463.217 kb on - strand, within Psyr_4606at 5463.341 kb on - strand, within Psyr_4606at 5463.341 kb on - strand, within Psyr_4606at 5463.429 kb on + strandat 5463.429 kb on + strand, within Psyr_4606at 5463.430 kb on - strand, within Psyr_4606at 5463.430 kb on - strand, within Psyr_4606at 5463.430 kb on - strand, within Psyr_4606at 5463.430 kb on - strand, within Psyr_4606at 5463.430 kb on - strand, within Psyr_4606at 5463.538 kb on - strand, within Psyr_4606at 5463.538 kb on - strand, within Psyr_4606at 5463.538 kb on - strand, within Psyr_4606at 5463.552 kb on + strand, within Psyr_4606at 5463.552 kb on + strand, within Psyr_4606at 5463.552 kb on + strand, within Psyr_4606at 5463.553 kb on - strand, within Psyr_4606at 5463.553 kb on - strand, within Psyr_4606at 5463.553 kb on - strand, within Psyr_4606at 5463.553 kb on - strand, within Psyr_4606at 5463.553 kb on - strand, within Psyr_4606at 5463.553 kb on - strand, within Psyr_4606at 5463.553 kb on - strand, within Psyr_4606at 5463.553 kb on - strand, within Psyr_4606at 5463.553 kb on - strand, within Psyr_4606at 5463.553 kb on - strand, within Psyr_4606at 5463.553 kb on - strand, within Psyr_4606at 5463.577 kb on - strand, within Psyr_4606at 5464.026 kb on + strandat 5464.107 kb on + strandat 5464.107 kb on + strandat 5464.107 kb on + strandat 5464.107 kb on + strandat 5464.107 kb on + strandat 5464.107 kb on + strandat 5464.108 kb on - strandat 5464.108 kb on - strandat 5464.108 kb on - strandat 5464.108 kb on - strandat 5464.174 kb on - strandat 5465.023 kb on + strandat 5465.085 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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5,461,473 + -1.4
5,461,473 + +0.2
5,461,473 + +1.2
5,461,473 + -1.6
5,461,474 - -0.6
5,461,474 - +0.0
5,461,474 - -0.4
5,461,474 - +0.2
5,461,574 + Psyr_4604 0.16 -0.4
5,461,574 + Psyr_4604 0.16 +0.4
5,461,574 + Psyr_4604 0.16 +0.2
5,461,575 - Psyr_4604 0.16 -1.8
5,461,575 - Psyr_4604 0.16 +0.8
5,461,606 + Psyr_4604 0.29 +1.1
5,461,606 + Psyr_4604 0.29 -0.2
5,461,607 - Psyr_4604 0.29 -4.0
5,461,767 - +0.4
5,461,840 + -0.1
5,461,846 - +1.4
5,461,916 - Psyr_4605 0.13 +0.6
5,461,916 - Psyr_4605 0.13 +1.1
5,461,916 - Psyr_4605 0.13 +1.8
5,462,092 - Psyr_4605 0.79 +0.6
5,462,112 + Psyr_4605 0.87 -0.9
5,462,112 + Psyr_4605 0.87 +0.9
5,462,112 + Psyr_4605 0.87 +0.9
5,462,112 + Psyr_4605 0.87 +0.4
5,462,112 + Psyr_4605 0.87 +1.2
5,462,113 - Psyr_4605 0.87 -2.6
5,462,113 - Psyr_4605 0.87 -1.4
5,462,113 - Psyr_4605 0.87 +0.1
5,462,113 - Psyr_4605 0.87 +0.8
5,462,213 + +0.5
5,462,213 + +0.2
5,462,213 + +1.7
5,462,213 + -1.4
5,462,214 - -0.7
5,462,214 - -1.1
5,462,408 + +2.8
5,462,408 + +0.2
5,462,577 - Psyr_4606 0.17 +1.8
5,462,686 - Psyr_4606 0.23 +1.3
5,462,686 - Psyr_4606 0.23 -1.1
5,462,727 + Psyr_4606 0.25 -0.2
5,462,728 - Psyr_4606 0.25 -0.8
5,462,728 - Psyr_4606 0.25 -1.3
5,462,728 - Psyr_4606 0.25 +0.0
5,462,730 + Psyr_4606 0.25 +1.2
5,462,850 + Psyr_4606 0.31 +1.4
5,462,850 + Psyr_4606 0.31 -0.4
5,462,851 - Psyr_4606 0.31 +0.7
5,462,882 + Psyr_4606 0.33 -2.1
5,462,883 - Psyr_4606 0.33 -1.4
5,462,957 - Psyr_4606 0.37 -0.5
5,462,957 - Psyr_4606 0.37 -1.7
5,462,957 - Psyr_4606 0.37 +0.1
5,463,095 + Psyr_4606 0.44 -0.4
5,463,096 - Psyr_4606 0.44 -0.9
5,463,096 - Psyr_4606 0.44 -0.8
5,463,096 - Psyr_4606 0.44 +0.4
5,463,096 - Psyr_4606 0.44 -1.4
5,463,210 + Psyr_4606 0.50 +0.0
5,463,211 - Psyr_4606 0.50 -0.2
5,463,217 - Psyr_4606 0.50 -0.8
5,463,341 - Psyr_4606 0.57 -1.6
5,463,341 - Psyr_4606 0.57 +2.5
5,463,429 + -1.8
5,463,429 + Psyr_4606 0.61 -1.4
5,463,430 - Psyr_4606 0.61 -3.4
5,463,430 - Psyr_4606 0.61 -0.4
5,463,430 - Psyr_4606 0.61 -1.6
5,463,430 - Psyr_4606 0.61 -0.1
5,463,430 - Psyr_4606 0.61 -0.2
5,463,538 - Psyr_4606 0.67 +0.6
5,463,538 - Psyr_4606 0.67 -1.4
5,463,538 - Psyr_4606 0.67 -1.5
5,463,552 + Psyr_4606 0.68 -2.0
5,463,552 + Psyr_4606 0.68 +0.7
5,463,552 + Psyr_4606 0.68 -0.7
5,463,553 - Psyr_4606 0.68 -1.7
5,463,553 - Psyr_4606 0.68 -0.4
5,463,553 - Psyr_4606 0.68 -1.2
5,463,553 - Psyr_4606 0.68 -0.6
5,463,553 - Psyr_4606 0.68 -1.4
5,463,553 - Psyr_4606 0.68 +0.2
5,463,553 - Psyr_4606 0.68 -0.8
5,463,553 - Psyr_4606 0.68 -0.8
5,463,553 - Psyr_4606 0.68 +0.2
5,463,553 - Psyr_4606 0.68 +2.8
5,463,553 - Psyr_4606 0.68 +1.2
5,463,577 - Psyr_4606 0.69 -0.0
5,464,026 + -0.2
5,464,107 + -0.1
5,464,107 + -1.4
5,464,107 + -1.4
5,464,107 + -0.7
5,464,107 + +0.7
5,464,107 + -1.2
5,464,108 - -0.4
5,464,108 - +1.4
5,464,108 - +1.2
5,464,108 - -1.4
5,464,174 - +0.4
5,465,023 + +0.2
5,465,085 - +0.2

Or see this region's nucleotide sequence