Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1534

Experiment: D-Mannose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose (C)
1,722,240	+		Psyr_1532	0.74	+0.9
1,722,241	-		Psyr_1532	0.75	+1.4
1,722,302	+		Psyr_1532	0.83	+0.7
1,722,341	+		Psyr_1532	0.89	-1.5
1,722,505	+		Psyr_1533	0.12	-1.1
1,722,505	+		Psyr_1533	0.12	-0.1
1,722,574	-		Psyr_1533	0.21	+1.2
1,722,574	-		Psyr_1533	0.21	-0.7
1,722,662	+		Psyr_1533	0.33	-1.3
1,722,662	+		Psyr_1533	0.33	+0.6
1,722,662	+		Psyr_1533	0.33	+0.2
1,722,662	+		Psyr_1533	0.33	-1.0
1,722,663	-		Psyr_1533	0.33	-0.3
1,722,663	-		Psyr_1533	0.33	+0.4
1,722,663	-		Psyr_1533	0.33	-0.9
1,722,663	-		Psyr_1533	0.33	-1.4
1,722,663	-		Psyr_1533	0.33	-1.1
1,722,663	-		Psyr_1533	0.33	+1.0
1,722,709	+		Psyr_1533	0.39	+0.9
1,722,709	+		Psyr_1533	0.39	-0.4
1,722,726	+		Psyr_1533	0.41	-1.7
1,722,727	-		Psyr_1533	0.41	-0.7
1,722,727	-		Psyr_1533	0.41	+0.3
1,722,727	-		Psyr_1533	0.41	+0.3
1,722,738	+		Psyr_1533	0.43	+0.5
1,722,738	+		Psyr_1533	0.43	-0.7
1,722,739	-		Psyr_1533	0.43	-0.8
1,722,739	-		Psyr_1533	0.43	+0.9
1,722,816	+		Psyr_1533	0.53	+1.6
1,722,816	+				+1.4
1,722,816	+		Psyr_1533	0.53	+1.6
1,722,816	+		Psyr_1533	0.53	+0.1
1,722,816	+		Psyr_1533	0.53	+0.6
1,722,817	-		Psyr_1533	0.53	-0.4
1,722,834	-		Psyr_1533	0.55	+0.6
1,722,834	-		Psyr_1533	0.55	-0.1
1,722,984	+		Psyr_1533	0.75	-2.5
1,722,984	+		Psyr_1533	0.75	-0.1
1,722,984	+		Psyr_1533	0.75	-1.0
1,722,984	+		Psyr_1533	0.75	+1.2
1,722,985	-		Psyr_1533	0.75	+0.1
1,722,985	-		Psyr_1533	0.75	-0.1
1,723,021	+		Psyr_1533	0.80	+0.6
1,723,034	+				-1.1
1,723,035	-		Psyr_1533	0.82	+0.9
1,723,102	-				+0.6
1,723,136	-				-0.7
1,723,278	+		Psyr_1534	0.12	-1.1
1,723,346	+		Psyr_1534	0.20	-2.1
1,723,346	+		Psyr_1534	0.20	-0.1
1,723,346	+		Psyr_1534	0.20	+0.1
1,723,346	+		Psyr_1534	0.20	+0.2
1,723,346	+		Psyr_1534	0.20	-0.9
1,723,347	-		Psyr_1534	0.20	+0.9
1,723,347	-		Psyr_1534	0.20	-0.7
1,723,366	-		Psyr_1534	0.22	-1.1
1,723,479	+		Psyr_1534	0.36	-0.0
1,723,479	+		Psyr_1534	0.36	-0.3
1,723,479	+		Psyr_1534	0.36	-0.9
1,723,480	-		Psyr_1534	0.36	-1.7
1,723,749	-		Psyr_1534	0.67	+1.1
1,723,812	+		Psyr_1534	0.74	+0.2
1,723,839	-		Psyr_1534	0.77	+0.2
1,723,857	+		Psyr_1534	0.79	+0.9
1,723,858	-		Psyr_1534	0.80	-2.1
1,723,891	+		Psyr_1534	0.83	-1.0
1,723,891	+		Psyr_1534	0.83	-0.4
1,723,891	+		Psyr_1534	0.83	-0.9
1,723,891	+		Psyr_1534	0.83	+0.0
1,723,892	-		Psyr_1534	0.84	-1.9
1,723,892	-		Psyr_1534	0.84	-1.9
1,723,892	-		Psyr_1534	0.84	-0.7
1,723,892	-		Psyr_1534	0.84	+1.1
1,723,892	-		Psyr_1534	0.84	-2.5
1,723,911	+		Psyr_1534	0.86	-2.1
1,723,992	-				+0.0
1,723,992	-				-2.3
1,723,992	-				+3.4
1,724,025	+				-1.9
1,724,025	+				-0.6
1,724,025	+				-2.5
1,724,026	-				-1.0
1,724,026	-				-0.8
1,724,026	-				+1.1
1,724,026	-				-1.6
1,724,029	+				-1.1
1,724,029	+				-0.1
1,724,029	+				-0.8
1,724,029	+				-0.9
1,724,029	+				-0.1
1,724,029	+				-0.4
1,724,029	+				-1.1
1,724,029	+				-0.4
1,724,029	+				+1.1
1,724,029	+				-0.1
1,724,029	+				+2.0
1,724,029	+				-0.5
1,724,030	-				-0.5
1,724,030	-				+0.3
1,724,030	-				+0.9
1,724,030	-				-0.6
1,724,030	-				+0.9
1,724,030	-				-0.4
1,724,030	-				-0.1
1,724,030	-				+1.3
1,724,030	-				-0.3
1,724,030	-				+0.3
1,724,030	-				+1.1
1,724,030	-				+0.3
1,724,030	-				+0.3
1,724,030	-				+0.3
1,724,059	+				-0.1
1,724,059	+				-0.8
1,724,059	+				+1.1
1,724,059	+				+1.2
1,724,135	+				+0.1
1,724,149	+				-1.5
1,724,149	+				-0.3
1,724,252	-				-0.1
1,724,294	+				-0.5
1,724,416	+				-1.1
1,724,434	+		Psyr_1535	0.11	-2.0
1,724,434	+		Psyr_1535	0.11	-0.7
1,724,434	+		Psyr_1535	0.11	+0.5
1,724,434	+		Psyr_1535	0.11	-1.1
1,724,434	+		Psyr_1535	0.11	-0.5
1,724,435	-		Psyr_1535	0.12	-2.6
1,724,435	-		Psyr_1535	0.12	-0.4
1,724,435	-		Psyr_1535	0.12	-0.4
1,724,445	-		Psyr_1535	0.14	+0.4
1,724,445	-		Psyr_1535	0.14	-1.1
1,724,470	+		Psyr_1535	0.20	-0.7
1,724,470	+		Psyr_1535	0.20	-1.1
1,724,470	+		Psyr_1535	0.20	+1.5
1,724,470	+		Psyr_1535	0.20	-0.4
1,724,470	+		Psyr_1535	0.20	-1.1
1,724,470	+		Psyr_1535	0.20	-0.7
1,724,470	+		Psyr_1535	0.20	-0.6
1,724,470	+		Psyr_1535	0.20	+1.4
1,724,471	-		Psyr_1535	0.20	+1.1
1,724,471	-		Psyr_1535	0.20	-0.1
1,724,471	-		Psyr_1535	0.20	-0.1
1,724,471	-		Psyr_1535	0.20	-1.1
1,724,471	-		Psyr_1535	0.20	-1.8
1,724,471	-		Psyr_1535	0.20	-0.1
1,724,471	-		Psyr_1535	0.20	+1.4
1,724,473	+		Psyr_1535	0.20	-0.1
1,724,474	-		Psyr_1535	0.20	+1.0
1,724,474	-		Psyr_1535	0.20	+0.9
1,724,474	-		Psyr_1535	0.20	-1.2
1,724,483	+		Psyr_1535	0.23	-0.7
1,724,483	+		Psyr_1535	0.23	-0.7
1,724,487	-		Psyr_1535	0.23	-2.5
1,724,541	-		Psyr_1535	0.36	+0.5
1,724,572	+		Psyr_1535	0.43	-0.7
1,724,572	+		Psyr_1535	0.43	-0.8
1,724,573	-		Psyr_1535	0.43	+0.9
1,724,573	-		Psyr_1535	0.43	-0.1
1,724,588	+		Psyr_1535	0.46	-0.6
1,724,588	+		Psyr_1535	0.46	+1.2
1,724,589	-		Psyr_1535	0.46	-1.9
1,724,589	-		Psyr_1535	0.46	+1.1
1,724,622	+		Psyr_1535	0.54	+0.0
1,724,694	+		Psyr_1535	0.70	-0.1
1,724,695	-		Psyr_1535	0.70	-1.1
1,724,695	-		Psyr_1535	0.70	-0.8
1,724,695	-		Psyr_1535	0.70	-0.3
1,724,695	-		Psyr_1535	0.70	-1.4
1,724,782	+				+1.0
1,724,784	+				+0.6
1,724,784	+				-0.5
1,724,784	+				+1.4
1,724,784	+				+0.9
1,724,784	+				-0.1
1,724,784	+				+0.6
1,724,784	+				-0.1
1,724,785	-				+0.9
1,724,785	-				-3.3
1,724,785	-				-1.1
1,724,785	-				-0.7
1,724,785	-				-0.1
1,724,824	+				-1.0
1,724,824	+				+0.7
1,724,868	-				-0.8
1,724,868	-				+0.2
1,724,868	-				-0.4
1,724,868	-				+0.4
1,724,873	+				+0.3
1,724,873	+				+0.1
1,724,874	-				-2.5
1,724,882	+				-1.1
1,724,915	+				-1.1
1,724,930	+				+1.0
1,724,997	+				-0.7