Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1450

Experiment: D-Mannose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose (C)
1,636,968	+		Psyr_1447	0.24	+1.2
1,636,969	-		Psyr_1447	0.24	-2.7
1,637,062	-		Psyr_1447	0.48	-0.7
1,637,175	-		Psyr_1447	0.76	-2.0
1,637,277	+				-1.5
1,637,314	+				+0.1
1,637,314	+				-1.0
1,637,315	-				-0.8
1,637,315	-				+0.9
1,637,315	-				-1.7
1,637,450	+		Psyr_1448	0.45	+0.6
1,637,450	+		Psyr_1448	0.45	+0.1
1,637,450	+		Psyr_1448	0.45	+0.0
1,637,450	+		Psyr_1448	0.45	+0.3
1,637,450	+		Psyr_1448	0.45	+1.5
1,637,450	+		Psyr_1448	0.45	+0.3
1,637,450	+		Psyr_1448	0.45	-0.4
1,637,450	+		Psyr_1448	0.45	-0.3
1,637,450	+		Psyr_1448	0.45	+1.2
1,637,450	+		Psyr_1448	0.45	+1.5
1,637,451	-		Psyr_1448	0.46	+1.1
1,637,451	-		Psyr_1448	0.46	+2.5
1,637,451	-		Psyr_1448	0.46	-1.0
1,637,451	-		Psyr_1448	0.46	-1.1
1,637,485	+		Psyr_1448	0.55	+1.5
1,637,485	+		Psyr_1448	0.55	+1.3
1,637,485	+		Psyr_1448	0.55	-0.0
1,637,510	+		Psyr_1448	0.62	-0.5
1,637,510	+		Psyr_1448	0.62	-0.1
1,637,511	-		Psyr_1448	0.62	-2.1
1,637,561	+		Psyr_1448	0.75	-0.1
1,637,561	+		Psyr_1448	0.75	+0.0
1,637,561	+		Psyr_1448	0.75	-1.7
1,637,655	+				+0.6
1,637,655	+				-0.0
1,637,694	+				-2.4
1,637,694	+				-1.1
1,637,745	+		Psyr_1449	0.31	-0.1
1,637,745	+		Psyr_1449	0.31	-2.3
1,637,775	-		Psyr_1449	0.43	+0.5
1,637,775	-		Psyr_1449	0.43	+0.9
1,637,782	+		Psyr_1449	0.46	+0.7
1,637,782	+		Psyr_1449	0.46	-0.1
1,637,782	+		Psyr_1449	0.46	-0.9
1,637,803	+		Psyr_1449	0.55	+0.3
1,637,936	-				-1.3
1,637,936	-				-0.9
1,638,175	+		Psyr_1450	0.74	+1.5
1,638,175	+		Psyr_1450	0.74	+0.0
1,638,175	+		Psyr_1450	0.74	+0.2
1,638,175	+		Psyr_1450	0.74	-1.6
1,638,176	-		Psyr_1450	0.74	+2.8
1,638,176	-		Psyr_1450	0.74	-1.1
1,638,176	-		Psyr_1450	0.74	-0.6
1,638,176	-		Psyr_1450	0.74	-0.7
1,638,198	+		Psyr_1450	0.80	-0.0
1,638,198	+		Psyr_1450	0.80	+2.2
1,638,198	+		Psyr_1450	0.80	-1.0
1,638,199	-		Psyr_1450	0.80	+1.1
1,638,199	-		Psyr_1450	0.80	+0.1
1,638,199	-		Psyr_1450	0.80	-0.6
1,638,290	+				+1.4
1,638,291	-				+1.7
1,638,298	+				+0.3
1,638,298	+				+0.4
1,638,298	+				-1.0
1,638,298	+				-1.0
1,638,298	+				+0.1
1,638,298	+				-0.9
1,638,298	+				+0.9
1,638,299	-				-1.5
1,638,299	-				-0.1
1,638,299	-				+1.0
1,638,299	-				-0.1
1,638,299	-				+0.2
1,638,336	+				-0.5
1,638,351	-				+0.3
1,638,351	-				-0.1
1,638,351	-				-0.5
1,638,588	+		Psyr_1451	0.72	+0.6
1,638,666	-				+0.3
1,638,793	+				-1.1
1,638,793	+				+3.3
1,638,793	+				+0.5
1,638,793	+				-0.1
1,638,793	+				+0.6
1,638,793	+				+2.2
1,638,793	+				-0.1
1,638,793	+				+0.2
1,638,793	+				-0.7
1,638,793	+				-0.6
1,638,793	+				-0.1
1,638,793	+				-0.9
1,638,793	+				-1.0
1,638,794	-				-0.6
1,638,794	-				+0.7
1,638,794	-				-0.1
1,638,794	-				+1.1
1,638,794	-				-1.7
1,638,794	-				-0.1
1,638,794	-				-0.2
1,638,794	-				+0.1
1,638,794	-				-1.3
1,638,794	-				-0.7
1,638,794	-				-0.4
1,638,797	+				-1.7
1,638,797	+				+1.5
1,638,797	+				-0.4
1,638,797	+				-1.4
1,638,797	+				-0.4
1,638,797	+				+0.6
1,638,797	+				+0.4
1,638,797	+				-0.2
1,638,797	+				+1.0
1,638,797	+				-0.1
1,638,797	+				+1.1
1,638,797	+				+1.5
1,638,797	+				-0.9
1,638,797	+				-1.0
1,638,797	+				-0.1
1,638,797	+				-1.1
1,638,798	-				+1.1
1,638,798	-				-0.1
1,638,798	-				-1.7
1,638,798	-				+0.2
1,638,798	-				+1.9
1,638,798	-				-0.1
1,638,798	-				+0.6
1,638,798	-				-1.8
1,638,798	-				-1.5
1,638,799	+				-0.7
1,638,799	+				+0.7
1,638,799	+				+0.9
1,638,799	+				+0.5
1,638,799	+				+0.4
1,638,799	+				-1.7
1,638,799	+				-0.1
1,638,799	+				+1.6
1,638,799	+				+0.5
1,638,800	-				-1.3
1,638,800	-				+0.5
1,638,800	-				-2.5
1,638,800	-				-0.6
1,638,800	-				-1.1
1,638,800	-				-0.9
1,638,800	-				+0.2
1,638,800	-				+1.9
1,638,800	-				+0.4
1,638,872	+		Psyr_1452	0.12	+1.6
1,638,872	+		Psyr_1452	0.12	-0.3
1,638,872	+		Psyr_1452	0.12	-0.1
1,638,921	+		Psyr_1452	0.16	+1.5
1,638,998	+		Psyr_1452	0.21	+0.7
1,638,999	-		Psyr_1452	0.21	-2.1
1,639,064	+		Psyr_1452	0.25	+0.7
1,639,064	+		Psyr_1452	0.25	-0.1
1,639,064	+		Psyr_1452	0.25	-0.7
1,639,064	+		Psyr_1452	0.25	+1.0
1,639,064	+		Psyr_1452	0.25	+0.2
1,639,064	+		Psyr_1452	0.25	-0.5
1,639,065	-		Psyr_1452	0.26	+1.5
1,639,065	-		Psyr_1452	0.26	+1.1
1,639,065	-		Psyr_1452	0.26	+0.5
1,639,065	-		Psyr_1452	0.26	+0.8
1,639,083	-		Psyr_1452	0.27	+0.3
1,639,122	+		Psyr_1452	0.29	+1.0
1,639,122	+		Psyr_1452	0.29	+0.3
1,639,122	+		Psyr_1452	0.29	+0.3
1,639,123	-		Psyr_1452	0.30	+0.3
1,639,136	+		Psyr_1452	0.30	-0.1
1,639,136	+		Psyr_1452	0.30	+2.0
1,639,137	-				-0.1
1,639,166	+		Psyr_1452	0.32	-0.5
1,639,166	+		Psyr_1452	0.32	-0.0
1,639,166	+		Psyr_1452	0.32	+0.9
1,639,166	+		Psyr_1452	0.32	-0.1
1,639,166	+		Psyr_1452	0.32	+1.1
1,639,167	-		Psyr_1452	0.33	+0.9
1,639,167	-		Psyr_1452	0.33	+0.0
1,639,167	-		Psyr_1452	0.33	-0.1
1,639,167	-		Psyr_1452	0.33	-0.5
1,639,167	-		Psyr_1452	0.33	-0.1
1,639,167	-		Psyr_1452	0.33	+1.3
1,639,248	+		Psyr_1452	0.38	+0.9
1,639,248	+		Psyr_1452	0.38	+0.4
1,639,249	-		Psyr_1452	0.38	+0.1
1,639,259	+		Psyr_1452	0.39	+1.2
1,639,260	-		Psyr_1452	0.39	-0.3
1,639,260	-		Psyr_1452	0.39	+0.5