Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1113

Experiment: D-Mannose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose (C)
1,260,685	+		Psyr_1112	0.70	+2.6
1,260,685	+		Psyr_1112	0.70	-0.2
1,260,791	+		Psyr_1112	0.77	+2.0
1,260,855	-		Psyr_1112	0.81	-0.2
1,261,100	+				-0.2
1,261,100	+				+1.2
1,261,100	+				+1.7
1,261,100	+				+2.3
1,261,101	-				+0.0
1,261,101	-				-0.9
1,261,166	+				+0.8
1,261,167	-				+0.8
1,261,270	+				-1.1
1,261,270	+				+0.0
1,261,270	+				-0.8
1,261,270	+				+0.7
1,261,271	-				-1.5
1,261,271	-				-1.0
1,261,271	-				-2.5
1,261,698	+		Psyr_1113	0.31	-0.8
1,261,699	-		Psyr_1113	0.31	-0.5
1,261,699	-		Psyr_1113	0.31	-2.0
1,261,710	+		Psyr_1113	0.32	-3.2
1,261,711	-		Psyr_1113	0.32	+1.0
1,261,802	+		Psyr_1113	0.39	+0.4
1,261,938	+		Psyr_1113	0.50	-3.8
1,262,028	+		Psyr_1113	0.57	-0.7
1,262,028	+		Psyr_1113	0.57	-2.3
1,262,028	+		Psyr_1113	0.57	-2.3
1,262,028	+		Psyr_1113	0.57	+0.4
1,262,028	+		Psyr_1113	0.57	-4.0
1,262,028	+		Psyr_1113	0.57	-3.1
1,262,028	+		Psyr_1113	0.57	-1.3
1,262,028	+		Psyr_1113	0.57	-2.5
1,262,028	+		Psyr_1113	0.57	-2.3
1,262,028	+		Psyr_1113	0.57	-2.4
1,262,028	+		Psyr_1113	0.57	-1.1
1,262,028	+		Psyr_1113	0.57	-3.1
1,262,028	+		Psyr_1113	0.57	-1.3
1,262,028	+		Psyr_1113	0.57	+0.0
1,262,028	+		Psyr_1113	0.57	-0.5
1,262,029	-		Psyr_1113	0.57	+0.0
1,262,029	-		Psyr_1113	0.57	-3.0
1,262,029	-		Psyr_1113	0.57	-2.5
1,262,029	-		Psyr_1113	0.57	-2.5
1,262,029	-		Psyr_1113	0.57	+0.0
1,262,029	-		Psyr_1113	0.57	-1.2
1,262,029	-		Psyr_1113	0.57	-2.3
1,262,029	-		Psyr_1113	0.57	-1.0
1,262,166	+		Psyr_1113	0.67	-1.3
1,262,167	-		Psyr_1113	0.67	-2.8
1,262,176	+		Psyr_1113	0.68	-0.5
1,262,205	-		Psyr_1113	0.70	-2.0
1,262,205	-		Psyr_1113	0.70	+0.6
1,262,208	+		Psyr_1113	0.71	-2.8
1,262,208	+		Psyr_1113	0.71	-0.3
1,262,208	+		Psyr_1113	0.71	-2.3
1,262,208	+		Psyr_1113	0.71	+0.0
1,262,208	+		Psyr_1113	0.71	-0.4
1,262,208	+		Psyr_1113	0.71	-2.0
1,262,208	+		Psyr_1113	0.71	-4.0
1,262,209	-		Psyr_1113	0.71	-0.4
1,262,209	-		Psyr_1113	0.71	-0.3
1,262,209	-		Psyr_1113	0.71	+0.2
1,262,209	-		Psyr_1113	0.71	-2.0
1,262,210	+		Psyr_1113	0.71	-2.0
1,262,253	-		Psyr_1113	0.74	-1.1
1,262,373	+		Psyr_1113	0.83	-2.5
1,262,471	+				-0.6
1,262,471	+				-1.4
1,262,471	+				-2.1
1,262,471	+				-3.1
1,262,472	-				-2.0
1,262,472	-				-3.0
1,262,472	-				-3.4
1,262,472	-				-2.8
1,262,472	-				-1.0
1,262,472	-				-2.0
1,262,472	-				-1.5
1,262,472	-				-1.0
1,262,514	+				-2.0
1,262,514	+				-2.1
1,262,514	+				-1.4
1,262,514	+				-1.1
1,262,514	+				-1.7
1,262,514	+				-2.5
1,262,514	+				-2.0
1,262,514	+				-1.0
1,262,514	+				-2.0
1,262,514	+				-3.1
1,262,514	+				-2.5
1,262,514	+				-2.0
1,262,515	-				-0.3
1,262,515	-				+0.0
1,262,515	-				-1.2
1,262,515	-				-2.7
1,262,515	-				+0.0
1,262,515	-				-3.8
1,262,586	+				-2.0
1,262,587	-				-1.8
1,262,672	-				-0.5
1,262,672	-				-3.3
1,262,673	+				-0.7
1,262,673	+				-0.8
1,262,673	+				-0.5
1,262,673	+				-2.5
1,262,674	-				-3.1
1,262,674	-				-1.1
1,262,787	+		Psyr_1114	0.10	-0.4
1,262,787	+		Psyr_1114	0.10	-3.0
1,262,787	+		Psyr_1114	0.10	+0.0
1,262,801	+		Psyr_1114	0.12	-2.0
1,262,802	-		Psyr_1114	0.12	-1.5
1,262,802	-		Psyr_1114	0.12	-2.8
1,262,808	-		Psyr_1114	0.13	-1.0
1,262,861	+		Psyr_1114	0.18	-3.1
1,262,861	+		Psyr_1114	0.18	+0.0
1,262,861	+		Psyr_1114	0.18	-2.3
1,262,862	-		Psyr_1114	0.19	+0.5
1,262,862	-		Psyr_1114	0.19	-3.3
1,262,862	-		Psyr_1114	0.19	-0.7
1,262,863	+		Psyr_1114	0.19	-3.4
1,262,863	+		Psyr_1114	0.19	-3.7
1,262,863	+		Psyr_1114	0.19	-2.3
1,262,863	+		Psyr_1114	0.19	-0.5
1,262,863	+		Psyr_1114	0.19	-2.4
1,262,863	+		Psyr_1114	0.19	-3.5
1,262,864	-		Psyr_1114	0.19	+0.0
1,262,864	-		Psyr_1114	0.19	-2.0
1,262,864	-		Psyr_1114	0.19	-0.5
1,263,037	+		Psyr_1114	0.38	+0.3
1,263,037	+		Psyr_1114	0.38	-1.5
1,263,037	+		Psyr_1114	0.38	-1.0
1,263,037	+		Psyr_1114	0.38	-3.0
1,263,037	+		Psyr_1114	0.38	-0.2
1,263,038	-		Psyr_1114	0.38	-1.0
1,263,038	-		Psyr_1114	0.38	-2.5
1,263,038	-		Psyr_1114	0.38	-2.5
1,263,038	-		Psyr_1114	0.38	-1.0
1,263,038	-		Psyr_1114	0.38	-2.0
1,263,038	-		Psyr_1114	0.38	-3.2
1,263,038	-		Psyr_1114	0.38	-2.0
1,263,041	+		Psyr_1114	0.38	-1.5
1,263,041	+		Psyr_1114	0.38	-1.5
1,263,041	+		Psyr_1114	0.38	-3.0
1,263,041	+		Psyr_1114	0.38	-1.0
1,263,041	+		Psyr_1114	0.38	-2.5
1,263,041	+		Psyr_1114	0.38	-1.5
1,263,041	+		Psyr_1114	0.38	+1.6
1,263,041	+		Psyr_1114	0.38	-2.5
1,263,041	+		Psyr_1114	0.38	-2.3
1,263,041	+		Psyr_1114	0.38	-0.4
1,263,042	-		Psyr_1114	0.38	-0.4
1,263,042	-		Psyr_1114	0.38	-3.0
1,263,042	-		Psyr_1114	0.38	-1.6
1,263,042	-		Psyr_1114	0.38	-0.5
1,263,042	-		Psyr_1114	0.38	-4.1
1,263,042	-		Psyr_1114	0.38	-2.5
1,263,042	-		Psyr_1114	0.38	-2.8
1,263,042	-		Psyr_1114	0.38	-3.8
1,263,042	-		Psyr_1114	0.38	-0.4
1,263,042	-		Psyr_1114	0.38	-1.5
1,263,192	-		Psyr_1114	0.55	-3.0
1,263,192	-		Psyr_1114	0.55	-2.0
1,263,192	-		Psyr_1114	0.55	-2.3
1,263,324	-		Psyr_1114	0.69	-1.8
1,263,324	-		Psyr_1114	0.69	-1.7
1,263,324	-		Psyr_1114	0.69	-2.0
1,263,473	+		Psyr_1114	0.86	-2.3
1,263,473	+		Psyr_1114	0.86	+0.0
1,263,473	+		Psyr_1114	0.86	+0.4
1,263,473	+		Psyr_1114	0.86	-1.5
1,263,474	-		Psyr_1114	0.86	-2.3
1,263,474	-		Psyr_1114	0.86	-2.0
1,263,474	-		Psyr_1114	0.86	+0.0
1,263,474	-		Psyr_1114	0.86	+0.0
1,263,563	+				-1.0
1,263,563	+				-2.3
1,263,569	+				-1.0