Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0823

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0821 and Psyr_0822 overlap by 1 nucleotidesPsyr_0822 and Psyr_0823 are separated by 12 nucleotidesPsyr_0823 and Psyr_0824 are separated by 39 nucleotides Psyr_0821: Psyr_0821 - PTS system D-fructose-specific IIA component (F1P-forming), Frc family / Phosphocarrier protein HPr / phosphoenolpyruvate--protein phosphotransferase, at 926,782 to 929,652 _0821 Psyr_0822: Psyr_0822 - 1-phosphofructokinase, at 929,652 to 930,593 _0822 Psyr_0823: Psyr_0823 - PTS system D-fructose-specific IIB component (F1P-forming), Frc family / PTS system D-fructose-specific IIC component (F1P-forming), Frc family, at 930,606 to 932,348 _0823 Psyr_0824: Psyr_0824 - acetyl-CoA acetyltransferase, at 932,388 to 933,566 _0824 Position (kb) 930 931 932 933Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 929.650 kb on + strandat 929.650 kb on + strandat 929.651 kb on - strandat 929.782 kb on + strand, within Psyr_0822at 929.783 kb on - strand, within Psyr_0822at 930.524 kb on + strandat 930.571 kb on + strandat 930.572 kb on - strandat 930.591 kb on + strandat 930.591 kb on + strandat 930.592 kb on - strandat 930.592 kb on - strandat 930.592 kb on - strandat 930.619 kb on + strandat 930.619 kb on + strandat 930.619 kb on + strandat 930.619 kb on + strandat 930.619 kb on + strandat 930.619 kb on + strandat 930.619 kb on + strandat 930.620 kb on - strandat 930.620 kb on - strandat 930.620 kb on - strandat 930.620 kb on - strandat 930.655 kb on + strandat 931.003 kb on + strand, within Psyr_0823at 931.003 kb on + strand, within Psyr_0823at 931.004 kb on - strand, within Psyr_0823at 931.059 kb on + strand, within Psyr_0823at 931.059 kb on + strand, within Psyr_0823at 931.197 kb on + strand, within Psyr_0823at 931.198 kb on - strand, within Psyr_0823at 931.198 kb on - strand, within Psyr_0823at 931.326 kb on + strand, within Psyr_0823at 931.327 kb on - strand, within Psyr_0823at 931.577 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.743 kb on + strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.744 kb on - strand, within Psyr_0823at 931.926 kb on + strand, within Psyr_0823at 931.926 kb on + strand, within Psyr_0823at 931.927 kb on - strand, within Psyr_0823at 931.927 kb on - strand, within Psyr_0823at 931.927 kb on - strand, within Psyr_0823at 931.988 kb on + strand, within Psyr_0823at 931.988 kb on + strand, within Psyr_0823at 931.989 kb on - strand, within Psyr_0823at 932.163 kb on + strand, within Psyr_0823at 932.163 kb on + strand, within Psyr_0823at 932.163 kb on + strand, within Psyr_0823at 932.163 kb on + strand, within Psyr_0823at 932.164 kb on - strand, within Psyr_0823at 932.164 kb on - strand, within Psyr_0823at 932.164 kb on - strand, within Psyr_0823at 932.164 kb on - strand, within Psyr_0823at 932.245 kb on - strandat 932.289 kb on + strandat 932.289 kb on + strandat 932.289 kb on + strandat 932.289 kb on + strandat 932.290 kb on - strandat 932.290 kb on - strandat 932.290 kb on - strandat 932.290 kb on - strandat 932.783 kb on + strand, within Psyr_0824at 933.064 kb on + strand, within Psyr_0824at 933.065 kb on - strand, within Psyr_0824at 933.065 kb on - strand, within Psyr_0824at 933.103 kb on + strand, within Psyr_0824at 933.103 kb on + strand, within Psyr_0824at 933.103 kb on + strand, within Psyr_0824at 933.104 kb on - strand, within Psyr_0824at 933.199 kb on + strand, within Psyr_0824at 933.199 kb on + strand, within Psyr_0824at 933.199 kb on + strand, within Psyr_0824at 933.199 kb on + strand, within Psyr_0824at 933.200 kb on - strand, within Psyr_0824at 933.200 kb on - strand, within Psyr_0824at 933.200 kb on - strand, within Psyr_0824at 933.200 kb on - strand, within Psyr_0824

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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929,650 + -2.2
929,650 + -1.8
929,651 - -3.5
929,782 + Psyr_0822 0.14 -3.9
929,783 - Psyr_0822 0.14 -2.2
930,524 + +0.2
930,571 + +0.1
930,572 - -3.5
930,591 + +1.2
930,591 + +0.4
930,592 - -4.4
930,592 - -2.4
930,592 - -2.6
930,619 + -2.7
930,619 + -3.5
930,619 + -2.8
930,619 + -2.7
930,619 + -2.4
930,619 + -0.8
930,619 + -2.5
930,620 - -2.2
930,620 - -3.2
930,620 - -2.7
930,620 - -1.5
930,655 + -3.5
931,003 + Psyr_0823 0.23 +0.9
931,003 + Psyr_0823 0.23 -2.2
931,004 - Psyr_0823 0.23 -1.7
931,059 + Psyr_0823 0.26 -3.4
931,059 + Psyr_0823 0.26 -4.5
931,197 + Psyr_0823 0.34 -3.2
931,198 - Psyr_0823 0.34 -1.4
931,198 - Psyr_0823 0.34 -1.4
931,326 + Psyr_0823 0.41 -2.2
931,327 - Psyr_0823 0.41 -3.2
931,577 + Psyr_0823 0.56 -3.3
931,743 + Psyr_0823 0.65 -1.8
931,743 + Psyr_0823 0.65 -0.4
931,743 + Psyr_0823 0.65 -1.8
931,743 + Psyr_0823 0.65 -0.8
931,743 + Psyr_0823 0.65 +0.2
931,743 + Psyr_0823 0.65 -3.9
931,743 + Psyr_0823 0.65 -0.8
931,743 + Psyr_0823 0.65 -2.4
931,743 + Psyr_0823 0.65 -0.7
931,743 + Psyr_0823 0.65 +0.2
931,744 - Psyr_0823 0.65 -3.0
931,744 - Psyr_0823 0.65 -3.5
931,744 - Psyr_0823 0.65 -2.0
931,744 - Psyr_0823 0.65 -2.5
931,744 - Psyr_0823 0.65 -0.8
931,744 - Psyr_0823 0.65 -0.4
931,744 - Psyr_0823 0.65 -4.1
931,744 - Psyr_0823 0.65 -2.4
931,926 + Psyr_0823 0.76 -2.4
931,926 + Psyr_0823 0.76 -3.5
931,927 - Psyr_0823 0.76 -0.8
931,927 - Psyr_0823 0.76 -0.8
931,927 - Psyr_0823 0.76 -2.7
931,988 + Psyr_0823 0.79 -2.2
931,988 + Psyr_0823 0.79 -1.4
931,989 - Psyr_0823 0.79 +0.2
932,163 + Psyr_0823 0.89 -1.8
932,163 + Psyr_0823 0.89 -3.0
932,163 + Psyr_0823 0.89 +0.2
932,163 + Psyr_0823 0.89 -1.4
932,164 - Psyr_0823 0.89 +0.2
932,164 - Psyr_0823 0.89 -1.8
932,164 - Psyr_0823 0.89 -1.8
932,164 - Psyr_0823 0.89 -2.8
932,245 - -3.3
932,289 + -2.7
932,289 + -0.8
932,289 + -2.2
932,289 + -2.2
932,290 - -1.7
932,290 - -0.2
932,290 - +0.2
932,290 - -1.4
932,783 + Psyr_0824 0.34 +0.3
933,064 + Psyr_0824 0.57 -0.0
933,065 - Psyr_0824 0.57 -0.0
933,065 - Psyr_0824 0.57 -1.8
933,103 + Psyr_0824 0.61 -0.7
933,103 + Psyr_0824 0.61 +0.2
933,103 + Psyr_0824 0.61 +0.2
933,104 - Psyr_0824 0.61 +0.2
933,199 + Psyr_0824 0.69 -1.4
933,199 + Psyr_0824 0.69 -2.8
933,199 + Psyr_0824 0.69 -0.1
933,199 + Psyr_0824 0.69 +0.4
933,200 - Psyr_0824 0.69 -0.5
933,200 - Psyr_0824 0.69 -1.1
933,200 - Psyr_0824 0.69 +1.3
933,200 - Psyr_0824 0.69 +0.3

Or see this region's nucleotide sequence