Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0632 and Psyr_0633 are separated by 275 nucleotides Psyr_0633 and Psyr_0634 are separated by 25 nucleotides Psyr_0634 and Psyr_0635 are separated by 140 nucleotides Psyr_0635 and Psyr_0636 are separated by 203 nucleotides
Psyr_0632: Psyr_0632 - Protein of unknown function DUF1375, at 722,518 to 722,802
_0632
Psyr_0633: Psyr_0633 - conserved hypothetical protein, at 723,078 to 723,719
_0633
Psyr_0634: Psyr_0634 - MORN motif protein, at 723,745 to 725,472
_0634
Psyr_0635: Psyr_0635 - MaoC-like dehydratase, at 725,613 to 726,068
_0635
Psyr_0636: Psyr_0636 - LrgA, at 726,272 to 726,634
_0636
Position (kb) 723
724
725
726 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 722.801 kb on - strand at 722.838 kb on + strand at 722.838 kb on + strand at 722.839 kb on - strand at 722.839 kb on - strand at 722.839 kb on - strand at 722.840 kb on + strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.841 kb on - strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 722.843 kb on - strand at 723.079 kb on + strand at 723.079 kb on + strand at 723.079 kb on + strand at 723.079 kb on + strand at 723.079 kb on + strand at 723.079 kb on + strand at 723.080 kb on - strand at 723.080 kb on - strand at 723.080 kb on - strand at 723.080 kb on - strand at 723.080 kb on - strand at 723.080 kb on - strand at 723.080 kb on - strand at 723.080 kb on - strand at 723.080 kb on - strand at 723.080 kb on - strand at 723.190 kb on + strand, within Psyr_0633 at 723.216 kb on - strand, within Psyr_0633 at 723.346 kb on + strand, within Psyr_0633 at 723.347 kb on - strand, within Psyr_0633 at 723.347 kb on - strand, within Psyr_0633 at 723.347 kb on - strand, within Psyr_0633 at 723.347 kb on - strand, within Psyr_0633 at 723.715 kb on + strand at 723.715 kb on + strand at 723.715 kb on + strand at 723.715 kb on + strand at 723.715 kb on + strand at 723.715 kb on + strand at 723.715 kb on + strand at 723.716 kb on - strand at 723.716 kb on - strand at 723.716 kb on - strand at 723.716 kb on - strand at 723.716 kb on - strand at 723.716 kb on - strand at 723.716 kb on - strand at 723.716 kb on - strand at 723.716 kb on - strand at 723.719 kb on + strand at 723.719 kb on + strand at 723.719 kb on + strand at 723.719 kb on + strand at 723.719 kb on + strand at 723.719 kb on + strand at 723.720 kb on - strand at 723.720 kb on - strand at 723.720 kb on - strand at 723.720 kb on - strand at 723.720 kb on - strand at 723.720 kb on - strand at 723.720 kb on - strand at 723.720 kb on - strand at 723.734 kb on + strand at 723.740 kb on + strand at 723.740 kb on + strand at 723.741 kb on - strand at 723.741 kb on - strand at 723.741 kb on - strand at 723.859 kb on + strand at 723.859 kb on + strand at 723.911 kb on + strand at 723.911 kb on + strand at 723.911 kb on + strand at 723.911 kb on + strand at 723.911 kb on + strand at 723.911 kb on + strand at 723.911 kb on + strand at 723.911 kb on + strand at 723.912 kb on - strand at 723.912 kb on - strand at 723.912 kb on - strand at 723.912 kb on - strand at 723.912 kb on - strand at 723.973 kb on + strand, within Psyr_0634 at 723.973 kb on + strand, within Psyr_0634 at 723.973 kb on + strand, within Psyr_0634 at 723.973 kb on + strand, within Psyr_0634 at 723.974 kb on - strand, within Psyr_0634 at 723.974 kb on - strand, within Psyr_0634 at 723.974 kb on - strand, within Psyr_0634 at 723.974 kb on - strand, within Psyr_0634 at 723.974 kb on - strand, within Psyr_0634 at 723.974 kb on - strand, within Psyr_0634 at 723.990 kb on - strand, within Psyr_0634 at 723.990 kb on - strand, within Psyr_0634 at 724.098 kb on - strand, within Psyr_0634 at 724.241 kb on + strand, within Psyr_0634 at 724.241 kb on + strand, within Psyr_0634 at 724.241 kb on + strand, within Psyr_0634 at 724.241 kb on + strand, within Psyr_0634 at 724.242 kb on - strand, within Psyr_0634 at 724.242 kb on - strand, within Psyr_0634 at 724.242 kb on - strand, within Psyr_0634 at 724.242 kb on - strand, within Psyr_0634 at 724.406 kb on + strand, within Psyr_0634 at 724.406 kb on + strand, within Psyr_0634 at 724.406 kb on + strand, within Psyr_0634 at 724.406 kb on + strand, within Psyr_0634 at 724.407 kb on - strand, within Psyr_0634 at 724.407 kb on - strand, within Psyr_0634 at 724.407 kb on - strand, within Psyr_0634 at 724.463 kb on + strand, within Psyr_0634 at 724.464 kb on - strand, within Psyr_0634 at 724.655 kb on + strand, within Psyr_0634 at 724.655 kb on + strand, within Psyr_0634 at 724.656 kb on - strand, within Psyr_0634 at 724.656 kb on - strand, within Psyr_0634 at 724.656 kb on - strand, within Psyr_0634 at 724.683 kb on - strand, within Psyr_0634 at 724.889 kb on + strand, within Psyr_0634 at 724.889 kb on + strand, within Psyr_0634 at 724.889 kb on + strand, within Psyr_0634 at 724.889 kb on + strand, within Psyr_0634 at 724.890 kb on - strand, within Psyr_0634 at 724.890 kb on - strand, within Psyr_0634 at 724.958 kb on + strand, within Psyr_0634 at 724.958 kb on + strand, within Psyr_0634 at 724.958 kb on + strand, within Psyr_0634 at 724.959 kb on - strand, within Psyr_0634 at 724.959 kb on - strand, within Psyr_0634 at 725.069 kb on + strand, within Psyr_0634 at 725.069 kb on + strand, within Psyr_0634 at 725.069 kb on + strand, within Psyr_0634 at 725.069 kb on + strand, within Psyr_0634 at 725.070 kb on - strand, within Psyr_0634 at 725.070 kb on - strand, within Psyr_0634 at 725.070 kb on - strand, within Psyr_0634 at 725.071 kb on + strand, within Psyr_0634 at 725.071 kb on + strand, within Psyr_0634 at 725.071 kb on + strand, within Psyr_0634 at 725.071 kb on + strand, within Psyr_0634 at 725.072 kb on - strand, within Psyr_0634 at 725.072 kb on - strand, within Psyr_0634 at 725.072 kb on - strand, within Psyr_0634 at 725.072 kb on - strand, within Psyr_0634 at 725.072 kb on - strand, within Psyr_0634 at 725.072 kb on - strand, within Psyr_0634 at 725.162 kb on + strand, within Psyr_0634 at 725.162 kb on + strand, within Psyr_0634 at 725.162 kb on + strand, within Psyr_0634 at 725.162 kb on + strand, within Psyr_0634 at 725.163 kb on - strand, within Psyr_0634 at 725.163 kb on - strand, within Psyr_0634 at 725.163 kb on - strand, within Psyr_0634 at 725.163 kb on - strand, within Psyr_0634 at 725.231 kb on + strand, within Psyr_0634 at 725.232 kb on - strand, within Psyr_0634 at 725.529 kb on - strand at 725.551 kb on + strand at 725.552 kb on - strand at 725.552 kb on - strand at 725.552 kb on - strand at 725.552 kb on - strand at 725.614 kb on + strand at 725.615 kb on - strand at 725.616 kb on + strand at 725.616 kb on + strand at 725.617 kb on - strand at 725.632 kb on - strand at 725.803 kb on + strand, within Psyr_0635 at 725.803 kb on + strand, within Psyr_0635 at 725.835 kb on + strand, within Psyr_0635 at 725.836 kb on - strand, within Psyr_0635 at 725.836 kb on - strand, within Psyr_0635 at 725.981 kb on + strand, within Psyr_0635 at 726.034 kb on + strand at 726.034 kb on + strand at 726.034 kb on + strand at 726.035 kb on - strand at 726.035 kb on - strand at 726.035 kb on - strand at 726.035 kb on - strand at 726.035 kb on - strand at 726.068 kb on + strand at 726.068 kb on + strand at 726.068 kb on + strand at 726.068 kb on + strand at 726.068 kb on + strand at 726.069 kb on - strand at 726.069 kb on - strand at 726.069 kb on - strand at 726.095 kb on + strand at 726.095 kb on + strand at 726.096 kb on - strand at 726.096 kb on - strand at 726.096 kb on - strand at 726.096 kb on - strand at 726.223 kb on + strand at 726.223 kb on + strand at 726.223 kb on + strand at 726.224 kb on - strand at 726.224 kb on - strand at 726.224 kb on - strand at 726.224 kb on - strand at 726.224 kb on - strand at 726.224 kb on - strand at 726.225 kb on + strand at 726.225 kb on + strand at 726.225 kb on + strand at 726.226 kb on - strand at 726.226 kb on - strand at 726.226 kb on - strand at 726.255 kb on + strand at 726.255 kb on + strand at 726.255 kb on + strand at 726.383 kb on - strand, within Psyr_0636 at 726.383 kb on - strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.389 kb on + strand, within Psyr_0636 at 726.390 kb on - strand, within Psyr_0636 at 726.390 kb on - strand, within Psyr_0636
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 722,801 - +0.7 722,838 + -0.8 722,838 + +0.6 722,839 - -0.4 722,839 - +1.4 722,839 - +0.5 722,840 + +1.6 722,841 - -1.6 722,841 - -1.2 722,841 - -0.2 722,841 - +1.2 722,841 - -0.5 722,841 - +0.2 722,841 - +0.5 722,842 + +2.2 722,842 + +0.8 722,842 + -0.4 722,842 + -0.8 722,842 + +0.7 722,842 + -0.5 722,843 - -1.1 722,843 - +0.9 722,843 - +0.9 722,843 - -0.4 722,843 - -0.2 722,843 - -2.1 722,843 - +0.1 722,843 - +0.9 722,843 - -1.4 722,843 - +0.5 723,079 + -1.3 723,079 + -0.1 723,079 + +0.2 723,079 + -0.4 723,079 + +0.6 723,079 + -1.4 723,080 - -0.1 723,080 - -0.4 723,080 - -0.4 723,080 - -0.7 723,080 - +0.4 723,080 - -0.1 723,080 - +0.2 723,080 - -0.8 723,080 - -1.0 723,080 - +1.2 723,190 + Psyr_0633 0.17 -1.1 723,216 - Psyr_0633 0.21 -0.2 723,346 + Psyr_0633 0.42 +3.4 723,347 - Psyr_0633 0.42 +0.5 723,347 - Psyr_0633 0.42 -1.0 723,347 - Psyr_0633 0.42 -0.0 723,347 - Psyr_0633 0.42 +0.6 723,715 + -0.4 723,715 + +0.2 723,715 + -0.4 723,715 + -2.8 723,715 + +0.6 723,715 + -1.6 723,715 + -0.1 723,716 - +0.5 723,716 - -2.8 723,716 - -0.2 723,716 - +1.6 723,716 - +0.2 723,716 - -0.8 723,716 - +1.4 723,716 - -0.7 723,716 - +2.1 723,719 + -0.2 723,719 + +0.7 723,719 + +1.0 723,719 + +0.1 723,719 + +1.3 723,719 + +1.2 723,720 - -0.2 723,720 - -1.5 723,720 - +3.9 723,720 - -0.6 723,720 - -3.0 723,720 - +0.4 723,720 - -2.1 723,720 - -0.7 723,734 + +0.3 723,740 + -0.8 723,740 + -0.1 723,741 - -0.5 723,741 - +1.2 723,741 - +0.1 723,859 + +1.2 723,859 + +0.5 723,911 + +0.4 723,911 + -0.2 723,911 + +1.6 723,911 + -2.0 723,911 + +0.6 723,911 + +2.1 723,911 + +0.8 723,911 + -1.1 723,912 - -1.1 723,912 - +1.2 723,912 - -1.3 723,912 - +0.7 723,912 - -0.8 723,973 + Psyr_0634 0.13 +0.1 723,973 + Psyr_0634 0.13 -0.6 723,973 + Psyr_0634 0.13 -1.0 723,973 + Psyr_0634 0.13 +2.4 723,974 - Psyr_0634 0.13 +3.4 723,974 - Psyr_0634 0.13 -0.8 723,974 - Psyr_0634 0.13 +0.0 723,974 - Psyr_0634 0.13 +0.8 723,974 - Psyr_0634 0.13 +0.2 723,974 - Psyr_0634 0.13 +0.2 723,990 - Psyr_0634 0.14 +0.9 723,990 - Psyr_0634 0.14 +0.2 724,098 - Psyr_0634 0.20 -1.7 724,241 + Psyr_0634 0.29 +0.2 724,241 + Psyr_0634 0.29 -1.2 724,241 + Psyr_0634 0.29 -0.3 724,241 + Psyr_0634 0.29 +1.2 724,242 - Psyr_0634 0.29 -0.2 724,242 - Psyr_0634 0.29 -0.5 724,242 - Psyr_0634 0.29 +0.4 724,242 - Psyr_0634 0.29 -0.8 724,406 + Psyr_0634 0.38 -1.9 724,406 + Psyr_0634 0.38 +2.1 724,406 + Psyr_0634 0.38 -0.6 724,406 + Psyr_0634 0.38 +0.6 724,407 - Psyr_0634 0.38 +1.3 724,407 - Psyr_0634 0.38 -0.8 724,407 - Psyr_0634 0.38 -0.5 724,463 + Psyr_0634 0.42 -0.8 724,464 - Psyr_0634 0.42 -0.1 724,655 + Psyr_0634 0.53 -0.6 724,655 + Psyr_0634 0.53 +0.9 724,656 - Psyr_0634 0.53 +0.2 724,656 - Psyr_0634 0.53 -0.3 724,656 - Psyr_0634 0.53 +0.9 724,683 - Psyr_0634 0.54 -0.7 724,889 + Psyr_0634 0.66 -1.2 724,889 + Psyr_0634 0.66 -0.7 724,889 + Psyr_0634 0.66 -0.5 724,889 + Psyr_0634 0.66 -1.0 724,890 - Psyr_0634 0.66 -0.3 724,890 - Psyr_0634 0.66 -0.4 724,958 + Psyr_0634 0.70 -0.5 724,958 + Psyr_0634 0.70 -0.2 724,958 + Psyr_0634 0.70 +1.2 724,959 - Psyr_0634 0.70 -1.4 724,959 - Psyr_0634 0.70 -1.3 725,069 + Psyr_0634 0.77 -0.6 725,069 + Psyr_0634 0.77 +0.0 725,069 + Psyr_0634 0.77 +0.3 725,069 + Psyr_0634 0.77 -0.3 725,070 - Psyr_0634 0.77 -0.2 725,070 - Psyr_0634 0.77 -0.3 725,070 - Psyr_0634 0.77 -1.3 725,071 + Psyr_0634 0.77 -1.0 725,071 + Psyr_0634 0.77 +0.5 725,071 + Psyr_0634 0.77 -1.8 725,071 + Psyr_0634 0.77 +0.4 725,072 - Psyr_0634 0.77 -2.6 725,072 - Psyr_0634 0.77 +0.6 725,072 - Psyr_0634 0.77 -2.1 725,072 - Psyr_0634 0.77 -0.1 725,072 - Psyr_0634 0.77 -1.2 725,072 - Psyr_0634 0.77 +0.2 725,162 + Psyr_0634 0.82 -0.8 725,162 + Psyr_0634 0.82 +0.6 725,162 + Psyr_0634 0.82 -0.4 725,162 + Psyr_0634 0.82 +0.5 725,163 - Psyr_0634 0.82 +1.3 725,163 - Psyr_0634 0.82 +0.7 725,163 - Psyr_0634 0.82 +1.2 725,163 - Psyr_0634 0.82 -0.8 725,231 + Psyr_0634 0.86 -2.1 725,232 - Psyr_0634 0.86 -1.4 725,529 - -0.7 725,551 + +1.1 725,552 - +1.2 725,552 - -0.3 725,552 - +0.2 725,552 - -0.0 725,614 + +0.5 725,615 - +0.9 725,616 + -0.8 725,616 + +1.5 725,617 - +0.9 725,632 - -0.1 725,803 + Psyr_0635 0.42 +1.2 725,803 + Psyr_0635 0.42 +3.2 725,835 + Psyr_0635 0.49 +0.6 725,836 - Psyr_0635 0.49 -1.8 725,836 - Psyr_0635 0.49 +0.2 725,981 + Psyr_0635 0.81 -1.8 726,034 + -0.5 726,034 + +0.7 726,034 + +0.4 726,035 - +1.2 726,035 - -2.1 726,035 - +0.8 726,035 - -1.7 726,035 - -0.6 726,068 + +1.4 726,068 + -1.4 726,068 + +0.6 726,068 + +2.8 726,068 + +0.8 726,069 - +0.5 726,069 - +2.8 726,069 - +1.0 726,095 + +1.6 726,095 + +0.2 726,096 - -1.2 726,096 - -0.2 726,096 - -0.6 726,096 - -0.7 726,223 + +1.8 726,223 + +0.1 726,223 + +1.2 726,224 - -0.8 726,224 - -0.2 726,224 - +0.0 726,224 - +0.8 726,224 - +0.1 726,224 - -0.9 726,225 + +4.5 726,225 + +0.0 726,225 + +1.8 726,226 - -1.8 726,226 - +1.5 726,226 - -0.4 726,255 + +0.4 726,255 + +1.5 726,255 + +1.5 726,383 - Psyr_0636 0.31 +3.7 726,383 - Psyr_0636 0.31 -0.9 726,389 + Psyr_0636 0.32 +1.3 726,389 + Psyr_0636 0.32 -0.4 726,389 + Psyr_0636 0.32 +0.2 726,389 + Psyr_0636 0.32 -0.2 726,389 + Psyr_0636 0.32 +0.2 726,389 + Psyr_0636 0.32 -1.4 726,390 - Psyr_0636 0.33 +0.0 726,390 - Psyr_0636 0.33 +0.1
Or see this region's nucleotide sequence