Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0052

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0050 and Psyr_0051 are separated by 67 nucleotidesPsyr_0051 and Psyr_0052 are separated by 16 nucleotidesPsyr_0052 and Psyr_0053 are separated by 46 nucleotidesPsyr_0053 and Psyr_0054 overlap by 4 nucleotides Psyr_0050: Psyr_0050 - Lysine exporter protein (LYSE/YGGA), at 51,165 to 51,797 _0050 Psyr_0051: Psyr_0051 - conserved hypothetical protein, at 51,865 to 52,458 _0051 Psyr_0052: Psyr_0052 - ABC transporter, at 52,475 to 54,385 _0052 Psyr_0053: Psyr_0053 - conserved hypothetical protein, at 54,432 to 54,908 _0053 Psyr_0054: Psyr_0054 - alginate regulatory protein AlgR3, at 54,905 to 55,921 _0054 Position (kb) 52 53 54 55Strain fitness (log2 ratio) -2 -1 0 1 2at 51.544 kb on + strand, within Psyr_0050at 51.544 kb on + strand, within Psyr_0050at 51.544 kb on + strand, within Psyr_0050at 51.553 kb on + strand, within Psyr_0050at 51.553 kb on + strand, within Psyr_0050at 51.554 kb on - strand, within Psyr_0050at 51.752 kb on + strandat 51.753 kb on - strandat 51.833 kb on + strandat 51.833 kb on + strandat 51.866 kb on + strandat 51.866 kb on + strandat 51.867 kb on - strandat 52.366 kb on + strand, within Psyr_0051at 52.366 kb on + strand, within Psyr_0051at 52.366 kb on + strand, within Psyr_0051at 52.367 kb on - strand, within Psyr_0051at 52.370 kb on + strand, within Psyr_0051at 52.370 kb on + strand, within Psyr_0051at 52.371 kb on - strand, within Psyr_0051at 52.371 kb on - strand, within Psyr_0051at 52.620 kb on + strandat 52.620 kb on + strandat 52.620 kb on + strandat 52.620 kb on + strandat 52.620 kb on + strandat 52.620 kb on + strandat 52.621 kb on - strandat 52.621 kb on - strandat 52.621 kb on - strandat 52.842 kb on + strand, within Psyr_0052at 52.842 kb on + strand, within Psyr_0052at 52.842 kb on + strand, within Psyr_0052at 52.843 kb on - strand, within Psyr_0052at 53.251 kb on - strand, within Psyr_0052at 53.251 kb on - strand, within Psyr_0052at 53.602 kb on - strand, within Psyr_0052at 53.640 kb on + strand, within Psyr_0052at 53.706 kb on + strand, within Psyr_0052at 53.802 kb on + strand, within Psyr_0052at 54.018 kb on + strand, within Psyr_0052at 54.018 kb on + strand, within Psyr_0052at 54.104 kb on + strand, within Psyr_0052at 54.138 kb on + strand, within Psyr_0052at 54.139 kb on - strand, within Psyr_0052at 54.139 kb on - strand, within Psyr_0052at 54.190 kb on + strand, within Psyr_0052at 54.269 kb on - strandat 54.301 kb on + strandat 54.302 kb on - strandat 54.335 kb on + strandat 54.335 kb on + strandat 54.359 kb on + strandat 54.360 kb on - strandat 54.364 kb on + strandat 54.365 kb on - strandat 54.365 kb on - strandat 54.385 kb on + strandat 54.385 kb on + strandat 54.385 kb on + strandat 54.385 kb on + strandat 54.431 kb on + strandat 54.432 kb on - strandat 54.432 kb on - strandat 54.432 kb on - strandat 54.468 kb on + strandat 54.598 kb on + strand, within Psyr_0053at 54.598 kb on + strand, within Psyr_0053at 54.598 kb on + strand, within Psyr_0053at 54.598 kb on + strand, within Psyr_0053at 54.598 kb on + strand, within Psyr_0053at 54.599 kb on - strand, within Psyr_0053at 54.906 kb on + strandat 54.906 kb on + strandat 54.906 kb on + strandat 54.907 kb on - strandat 54.907 kb on - strandat 54.907 kb on - strandat 55.240 kb on + strand, within Psyr_0054at 55.241 kb on - strand, within Psyr_0054

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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51,544 + Psyr_0050 0.60 -0.3
51,544 + Psyr_0050 0.60 -0.6
51,544 + Psyr_0050 0.60 -0.4
51,553 + Psyr_0050 0.61 +0.1
51,553 + Psyr_0050 0.61 -0.7
51,554 - Psyr_0050 0.61 +0.1
51,752 + -0.4
51,753 - +0.5
51,833 + +0.3
51,833 + -0.8
51,866 + -0.3
51,866 + +0.3
51,867 - -0.2
52,366 + Psyr_0051 0.84 +0.9
52,366 + Psyr_0051 0.84 +0.3
52,366 + Psyr_0051 0.84 +1.0
52,367 - Psyr_0051 0.85 -0.5
52,370 + Psyr_0051 0.85 +0.3
52,370 + Psyr_0051 0.85 -0.2
52,371 - Psyr_0051 0.85 -1.2
52,371 - Psyr_0051 0.85 +0.5
52,620 + -0.5
52,620 + -0.2
52,620 + +0.5
52,620 + +0.3
52,620 + +2.7
52,620 + -0.7
52,621 - +0.6
52,621 - -0.1
52,621 - +0.5
52,842 + Psyr_0052 0.19 -0.1
52,842 + Psyr_0052 0.19 -0.8
52,842 + Psyr_0052 0.19 +0.6
52,843 - Psyr_0052 0.19 -0.1
53,251 - Psyr_0052 0.41 +1.5
53,251 - Psyr_0052 0.41 -2.6
53,602 - Psyr_0052 0.59 +0.8
53,640 + Psyr_0052 0.61 +1.9
53,706 + Psyr_0052 0.64 +2.1
53,802 + Psyr_0052 0.69 +0.5
54,018 + Psyr_0052 0.81 +0.1
54,018 + Psyr_0052 0.81 +0.4
54,104 + Psyr_0052 0.85 -1.4
54,138 + Psyr_0052 0.87 +0.3
54,139 - Psyr_0052 0.87 +0.6
54,139 - Psyr_0052 0.87 +2.0
54,190 + Psyr_0052 0.90 +2.6
54,269 - +0.3
54,301 + -0.7
54,302 - -0.2
54,335 + +0.3
54,335 + +1.4
54,359 + +0.2
54,360 - +1.3
54,364 + -0.0
54,365 - +0.3
54,365 - +0.7
54,385 + +0.2
54,385 + +0.9
54,385 + +1.2
54,385 + +1.6
54,431 + -1.5
54,432 - -1.2
54,432 - +0.5
54,432 - -2.5
54,468 + -0.5
54,598 + Psyr_0053 0.35 -0.2
54,598 + Psyr_0053 0.35 -1.2
54,598 + Psyr_0053 0.35 +0.3
54,598 + Psyr_0053 0.35 -0.0
54,598 + Psyr_0053 0.35 -0.1
54,599 - Psyr_0053 0.35 -1.2
54,906 + -0.5
54,906 + +1.0
54,906 + +0.4
54,907 - +0.6
54,907 - +0.2
54,907 - +0.4
55,240 + Psyr_0054 0.33 -2.2
55,241 - Psyr_0054 0.33 +1.6

Or see this region's nucleotide sequence