Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2566

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaccB and efp are separated by 41 nucleotidesefp and ppiB are separated by 129 nucleotidesppiB and thiL are separated by 13 nucleotides Synpcc7942_2564: accB - biotin carboxyl carrier protein, at 2,644,317 to 2,644,793 accB Synpcc7942_2565: efp - elongation factor P, at 2,644,835 to 2,645,392 efp Synpcc7942_2566: ppiB - peptidyl-prolyl cis-trans isomerase, at 2,645,522 to 2,646,619 ppiB Synpcc7942_2567: thiL - thiamine monophosphate kinase, at 2,646,633 to 2,647,616 thiL Position (kb) 2645 2646 2647Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2644.795 kb on + strandat 2644.795 kb on + strandat 2645.387 kb on + strandat 2645.448 kb on - strandat 2645.448 kb on - strandat 2645.469 kb on + strandat 2645.477 kb on - strandat 2645.495 kb on + strandat 2645.535 kb on - strandat 2645.535 kb on - strandat 2645.590 kb on - strandat 2645.671 kb on + strandat 2645.751 kb on - strand, within ppiBat 2645.779 kb on + strandat 2645.878 kb on + strand, within ppiBat 2645.923 kb on + strand, within ppiBat 2646.124 kb on - strandat 2646.136 kb on - strand, within ppiBat 2646.184 kb on - strand, within ppiBat 2646.264 kb on - strand, within ppiBat 2646.423 kb on - strand, within ppiBat 2646.459 kb on - strand, within ppiBat 2646.526 kb on + strandat 2646.534 kb on - strandat 2646.574 kb on + strandat 2646.581 kb on - strandat 2646.615 kb on + strandat 2646.622 kb on - strandat 2646.622 kb on - strandat 2647.618 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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2,644,795 + +0.0
2,644,795 + -1.0
2,645,387 + -0.3
2,645,448 - -1.9
2,645,448 - -0.7
2,645,469 + -0.1
2,645,477 - -0.5
2,645,495 + -2.8
2,645,535 - +2.1
2,645,535 - +1.7
2,645,590 - -0.1
2,645,671 + +1.6
2,645,751 - ppiB Synpcc7942_2566 0.21 -1.5
2,645,779 + +1.0
2,645,878 + ppiB Synpcc7942_2566 0.32 -1.6
2,645,923 + ppiB Synpcc7942_2566 0.37 +0.0
2,646,124 - +0.8
2,646,136 - ppiB Synpcc7942_2566 0.56 +0.6
2,646,184 - ppiB Synpcc7942_2566 0.60 +0.2
2,646,264 - ppiB Synpcc7942_2566 0.68 -0.1
2,646,423 - ppiB Synpcc7942_2566 0.82 -1.4
2,646,459 - ppiB Synpcc7942_2566 0.85 +0.5
2,646,526 + +0.4
2,646,534 - +0.6
2,646,574 + +1.4
2,646,581 - -1.9
2,646,615 + +0.6
2,646,622 - +1.8
2,646,622 - -1.1
2,647,618 - -0.8

Or see this region's nucleotide sequence