Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0971 and Synpcc7942_0972 are separated by 107 nucleotides Synpcc7942_0972 and ugd overlap by 4 nucleotides
Synpcc7942_0971: Synpcc7942_0971 - hypothetical protein, at 977,903 to 979,261
_0971
Synpcc7942_0972: Synpcc7942_0972 - YjgF-like protein, at 979,369 to 979,761
_0972
Synpcc7942_0973: ugd - UDP-glucose 6-dehydrogenase, at 979,758 to 980,930
ugd
Position (kb) 979
980 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 978.372 kb on + strand, within Synpcc7942_0971 at 978.521 kb on - strand, within Synpcc7942_0971 at 978.521 kb on - strand, within Synpcc7942_0971 at 978.551 kb on - strand, within Synpcc7942_0971 at 978.560 kb on + strand, within Synpcc7942_0971 at 978.567 kb on + strand, within Synpcc7942_0971 at 978.567 kb on + strand, within Synpcc7942_0971 at 978.567 kb on + strand, within Synpcc7942_0971 at 978.567 kb on + strand, within Synpcc7942_0971 at 978.568 kb on - strand, within Synpcc7942_0971 at 978.568 kb on - strand, within Synpcc7942_0971 at 978.571 kb on - strand, within Synpcc7942_0971 at 978.573 kb on - strand, within Synpcc7942_0971 at 978.575 kb on - strand, within Synpcc7942_0971 at 978.576 kb on - strand, within Synpcc7942_0971 at 978.604 kb on - strand, within Synpcc7942_0971 at 978.606 kb on - strand, within Synpcc7942_0971 at 978.667 kb on - strand, within Synpcc7942_0971 at 978.668 kb on - strand, within Synpcc7942_0971 at 978.668 kb on - strand, within Synpcc7942_0971 at 978.709 kb on - strand, within Synpcc7942_0971 at 978.740 kb on - strand, within Synpcc7942_0971 at 978.810 kb on + strand, within Synpcc7942_0971 at 978.810 kb on + strand, within Synpcc7942_0971 at 978.812 kb on + strand, within Synpcc7942_0971 at 978.813 kb on - strand, within Synpcc7942_0971 at 978.818 kb on - strand, within Synpcc7942_0971 at 978.818 kb on - strand, within Synpcc7942_0971 at 978.818 kb on - strand, within Synpcc7942_0971 at 978.818 kb on - strand, within Synpcc7942_0971 at 978.818 kb on - strand, within Synpcc7942_0971 at 978.823 kb on - strand, within Synpcc7942_0971 at 978.827 kb on - strand, within Synpcc7942_0971 at 978.887 kb on + strand, within Synpcc7942_0971 at 978.892 kb on + strand, within Synpcc7942_0971 at 978.900 kb on - strand, within Synpcc7942_0971 at 978.900 kb on - strand, within Synpcc7942_0971 at 978.922 kb on + strand, within Synpcc7942_0971 at 978.930 kb on - strand, within Synpcc7942_0971 at 978.973 kb on - strand, within Synpcc7942_0971 at 978.984 kb on + strand, within Synpcc7942_0971 at 978.997 kb on + strand, within Synpcc7942_0971 at 979.005 kb on - strand, within Synpcc7942_0971 at 979.009 kb on - strand, within Synpcc7942_0971 at 979.009 kb on - strand, within Synpcc7942_0971 at 979.011 kb on + strand, within Synpcc7942_0971 at 979.051 kb on - strand, within Synpcc7942_0971 at 979.051 kb on - strand, within Synpcc7942_0971 at 979.053 kb on + strand, within Synpcc7942_0971 at 979.067 kb on + strand, within Synpcc7942_0971 at 979.119 kb on + strand, within Synpcc7942_0971 at 979.127 kb on - strand at 979.137 kb on - strand at 979.137 kb on - strand at 979.149 kb on + strand at 979.172 kb on + strand at 979.173 kb on + strand at 979.180 kb on - strand at 979.181 kb on - strand at 979.181 kb on - strand at 979.307 kb on + strand at 979.358 kb on + strand at 979.383 kb on + strand at 979.391 kb on - strand at 979.391 kb on - strand at 979.391 kb on - strand at 979.391 kb on - strand at 979.391 kb on - strand at 979.449 kb on + strand, within Synpcc7942_0972 at 979.452 kb on - strand, within Synpcc7942_0972 at 979.522 kb on + strand, within Synpcc7942_0972 at 979.522 kb on + strand, within Synpcc7942_0972 at 979.537 kb on + strand, within Synpcc7942_0972 at 979.537 kb on + strand, within Synpcc7942_0972 at 979.545 kb on - strand, within Synpcc7942_0972 at 979.545 kb on - strand, within Synpcc7942_0972 at 979.548 kb on + strand, within Synpcc7942_0972 at 979.548 kb on + strand, within Synpcc7942_0972 at 979.548 kb on + strand, within Synpcc7942_0972 at 979.558 kb on + strand, within Synpcc7942_0972 at 979.588 kb on - strand, within Synpcc7942_0972 at 979.596 kb on + strand, within Synpcc7942_0972 at 979.601 kb on - strand, within Synpcc7942_0972 at 979.646 kb on - strand, within Synpcc7942_0972 at 979.684 kb on + strand, within Synpcc7942_0972 at 979.691 kb on + strand, within Synpcc7942_0972 at 979.692 kb on - strand, within Synpcc7942_0972 at 979.716 kb on - strand, within Synpcc7942_0972 at 979.722 kb on + strand at 979.742 kb on + strand at 979.742 kb on + strand at 979.742 kb on + strand at 979.750 kb on - strand at 979.758 kb on - strand at 979.793 kb on + strand at 979.794 kb on - strand at 979.813 kb on + strand at 979.858 kb on + strand at 979.865 kb on - strand at 979.866 kb on - strand at 979.866 kb on - strand at 979.866 kb on - strand at 979.866 kb on - strand at 979.871 kb on - strand at 979.922 kb on - strand, within ugd at 979.978 kb on + strand, within ugd at 979.991 kb on + strand, within ugd at 979.999 kb on + strand, within ugd at 980.000 kb on - strand, within ugd at 980.007 kb on - strand, within ugd at 980.007 kb on - strand, within ugd at 980.007 kb on - strand, within ugd at 980.035 kb on + strand, within ugd at 980.040 kb on + strand, within ugd at 980.066 kb on - strand, within ugd at 980.079 kb on - strand, within ugd at 980.085 kb on - strand, within ugd at 980.091 kb on + strand, within ugd at 980.093 kb on - strand, within ugd at 980.140 kb on + strand, within ugd at 980.211 kb on + strand, within ugd at 980.212 kb on + strand, within ugd at 980.212 kb on + strand, within ugd at 980.212 kb on + strand, within ugd at 980.212 kb on + strand, within ugd at 980.212 kb on + strand, within ugd at 980.212 kb on + strand, within ugd at 980.217 kb on + strand, within ugd at 980.217 kb on + strand, within ugd at 980.217 kb on + strand, within ugd at 980.217 kb on + strand, within ugd at 980.217 kb on + strand, within ugd at 980.217 kb on + strand, within ugd at 980.219 kb on - strand, within ugd at 980.225 kb on - strand, within ugd at 980.225 kb on - strand, within ugd at 980.246 kb on - strand, within ugd at 980.246 kb on - strand, within ugd at 980.247 kb on - strand, within ugd at 980.271 kb on - strand, within ugd at 980.274 kb on + strand, within ugd at 980.277 kb on - strand, within ugd at 980.279 kb on + strand, within ugd at 980.318 kb on + strand, within ugd at 980.353 kb on - strand, within ugd at 980.362 kb on + strand, within ugd at 980.362 kb on + strand, within ugd at 980.370 kb on - strand, within ugd at 980.433 kb on + strand, within ugd at 980.440 kb on + strand, within ugd at 980.453 kb on - strand, within ugd at 980.463 kb on - strand, within ugd at 980.472 kb on + strand, within ugd at 980.527 kb on + strand, within ugd at 980.534 kb on - strand, within ugd at 980.562 kb on + strand, within ugd at 980.562 kb on + strand, within ugd at 980.570 kb on - strand, within ugd at 980.570 kb on - strand, within ugd at 980.581 kb on + strand, within ugd at 980.590 kb on - strand, within ugd at 980.629 kb on + strand, within ugd at 980.637 kb on - strand, within ugd at 980.639 kb on + strand, within ugd at 980.639 kb on + strand, within ugd at 980.647 kb on - strand, within ugd at 980.647 kb on - strand, within ugd at 980.657 kb on - strand, within ugd at 980.697 kb on - strand, within ugd at 980.744 kb on - strand, within ugd at 980.746 kb on - strand, within ugd
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 978,372 + Synpcc7942_0971 0.35 +0.2 978,521 - Synpcc7942_0971 0.45 +0.7 978,521 - Synpcc7942_0971 0.45 -0.4 978,551 - Synpcc7942_0971 0.48 +1.0 978,560 + Synpcc7942_0971 0.48 +1.1 978,567 + Synpcc7942_0971 0.49 -2.1 978,567 + Synpcc7942_0971 0.49 +0.2 978,567 + Synpcc7942_0971 0.49 +0.9 978,567 + Synpcc7942_0971 0.49 -0.9 978,568 - Synpcc7942_0971 0.49 +0.8 978,568 - Synpcc7942_0971 0.49 -2.0 978,571 - Synpcc7942_0971 0.49 -2.0 978,573 - Synpcc7942_0971 0.49 +0.0 978,575 - Synpcc7942_0971 0.49 -1.0 978,576 - Synpcc7942_0971 0.50 -0.3 978,604 - Synpcc7942_0971 0.52 -0.2 978,606 - Synpcc7942_0971 0.52 +0.7 978,667 - Synpcc7942_0971 0.56 +1.6 978,668 - Synpcc7942_0971 0.56 -0.5 978,668 - Synpcc7942_0971 0.56 +0.6 978,709 - Synpcc7942_0971 0.59 -0.1 978,740 - Synpcc7942_0971 0.62 -0.9 978,810 + Synpcc7942_0971 0.67 +0.2 978,810 + Synpcc7942_0971 0.67 -1.6 978,812 + Synpcc7942_0971 0.67 -0.8 978,813 - Synpcc7942_0971 0.67 +0.7 978,818 - Synpcc7942_0971 0.67 +0.8 978,818 - Synpcc7942_0971 0.67 +1.1 978,818 - Synpcc7942_0971 0.67 -0.1 978,818 - Synpcc7942_0971 0.67 +1.0 978,818 - Synpcc7942_0971 0.67 -0.9 978,823 - Synpcc7942_0971 0.68 +1.6 978,827 - Synpcc7942_0971 0.68 -0.9 978,887 + Synpcc7942_0971 0.72 +1.5 978,892 + Synpcc7942_0971 0.73 +0.5 978,900 - Synpcc7942_0971 0.73 -1.4 978,900 - Synpcc7942_0971 0.73 -2.1 978,922 + Synpcc7942_0971 0.75 +0.5 978,930 - Synpcc7942_0971 0.76 -0.7 978,973 - Synpcc7942_0971 0.79 -0.8 978,984 + Synpcc7942_0971 0.80 -1.8 978,997 + Synpcc7942_0971 0.81 -0.2 979,005 - Synpcc7942_0971 0.81 +1.2 979,009 - Synpcc7942_0971 0.81 -0.9 979,009 - Synpcc7942_0971 0.81 -1.1 979,011 + Synpcc7942_0971 0.82 -1.7 979,051 - Synpcc7942_0971 0.84 +1.2 979,051 - Synpcc7942_0971 0.84 +1.2 979,053 + Synpcc7942_0971 0.85 -0.7 979,067 + Synpcc7942_0971 0.86 +0.7 979,119 + Synpcc7942_0971 0.89 -0.7 979,127 - +0.3 979,137 - +0.1 979,137 - -0.4 979,149 + +0.8 979,172 + +0.2 979,173 + +1.8 979,180 - +1.9 979,181 - +1.4 979,181 - -2.1 979,307 + -0.2 979,358 + -0.3 979,383 + -0.4 979,391 - -0.7 979,391 - +0.0 979,391 - -1.1 979,391 - -0.9 979,391 - -1.8 979,449 + Synpcc7942_0972 0.20 -0.7 979,452 - Synpcc7942_0972 0.21 +1.2 979,522 + Synpcc7942_0972 0.39 -1.5 979,522 + Synpcc7942_0972 0.39 -2.1 979,537 + Synpcc7942_0972 0.43 -0.8 979,537 + Synpcc7942_0972 0.43 -1.0 979,545 - Synpcc7942_0972 0.45 -1.1 979,545 - Synpcc7942_0972 0.45 -0.2 979,548 + Synpcc7942_0972 0.46 -2.3 979,548 + Synpcc7942_0972 0.46 -2.7 979,548 + Synpcc7942_0972 0.46 -0.3 979,558 + Synpcc7942_0972 0.48 -0.7 979,588 - Synpcc7942_0972 0.56 +0.6 979,596 + Synpcc7942_0972 0.58 -2.1 979,601 - Synpcc7942_0972 0.59 -1.7 979,646 - Synpcc7942_0972 0.70 -2.6 979,684 + Synpcc7942_0972 0.80 -2.0 979,691 + Synpcc7942_0972 0.82 -0.7 979,692 - Synpcc7942_0972 0.82 -2.2 979,716 - Synpcc7942_0972 0.88 -0.5 979,722 + -1.1 979,742 + -1.6 979,742 + -2.2 979,742 + -1.2 979,750 - +1.1 979,758 - +0.2 979,793 + +0.5 979,794 - +0.7 979,813 + -0.5 979,858 + +0.3 979,865 - +1.0 979,866 - -1.4 979,866 - +1.4 979,866 - -1.7 979,866 - -0.1 979,871 - -1.1 979,922 - ugd Synpcc7942_0973 0.14 -2.8 979,978 + ugd Synpcc7942_0973 0.19 -0.2 979,991 + ugd Synpcc7942_0973 0.20 +0.2 979,999 + ugd Synpcc7942_0973 0.21 -0.3 980,000 - ugd Synpcc7942_0973 0.21 -0.8 980,007 - ugd Synpcc7942_0973 0.21 -3.9 980,007 - ugd Synpcc7942_0973 0.21 +0.1 980,007 - ugd Synpcc7942_0973 0.21 -0.8 980,035 + ugd Synpcc7942_0973 0.24 +2.9 980,040 + ugd Synpcc7942_0973 0.24 -0.2 980,066 - ugd Synpcc7942_0973 0.26 -1.0 980,079 - ugd Synpcc7942_0973 0.27 -1.7 980,085 - ugd Synpcc7942_0973 0.28 +1.6 980,091 + ugd Synpcc7942_0973 0.28 -1.0 980,093 - ugd Synpcc7942_0973 0.29 +0.2 980,140 + ugd Synpcc7942_0973 0.33 +1.5 980,211 + ugd Synpcc7942_0973 0.39 +3.1 980,212 + ugd Synpcc7942_0973 0.39 +2.4 980,212 + ugd Synpcc7942_0973 0.39 +0.8 980,212 + ugd Synpcc7942_0973 0.39 +0.2 980,212 + ugd Synpcc7942_0973 0.39 +2.3 980,212 + ugd Synpcc7942_0973 0.39 +0.9 980,212 + ugd Synpcc7942_0973 0.39 -0.9 980,217 + ugd Synpcc7942_0973 0.39 +0.3 980,217 + ugd Synpcc7942_0973 0.39 +0.2 980,217 + ugd Synpcc7942_0973 0.39 -2.5 980,217 + ugd Synpcc7942_0973 0.39 -1.0 980,217 + ugd Synpcc7942_0973 0.39 +0.8 980,217 + ugd Synpcc7942_0973 0.39 +2.2 980,219 - ugd Synpcc7942_0973 0.39 -0.5 980,225 - ugd Synpcc7942_0973 0.40 -0.9 980,225 - ugd Synpcc7942_0973 0.40 +1.1 980,246 - ugd Synpcc7942_0973 0.42 +2.3 980,246 - ugd Synpcc7942_0973 0.42 -0.8 980,247 - ugd Synpcc7942_0973 0.42 +0.3 980,271 - ugd Synpcc7942_0973 0.44 -0.1 980,274 + ugd Synpcc7942_0973 0.44 +1.8 980,277 - ugd Synpcc7942_0973 0.44 +1.1 980,279 + ugd Synpcc7942_0973 0.44 +0.9 980,318 + ugd Synpcc7942_0973 0.48 +0.2 980,353 - ugd Synpcc7942_0973 0.51 +0.3 980,362 + ugd Synpcc7942_0973 0.51 +0.3 980,362 + ugd Synpcc7942_0973 0.51 +0.9 980,370 - ugd Synpcc7942_0973 0.52 -0.8 980,433 + ugd Synpcc7942_0973 0.58 +1.7 980,440 + ugd Synpcc7942_0973 0.58 +0.7 980,453 - ugd Synpcc7942_0973 0.59 +0.7 980,463 - ugd Synpcc7942_0973 0.60 -0.2 980,472 + ugd Synpcc7942_0973 0.61 -0.3 980,527 + ugd Synpcc7942_0973 0.66 -0.5 980,534 - ugd Synpcc7942_0973 0.66 -0.9 980,562 + ugd Synpcc7942_0973 0.69 -2.1 980,562 + ugd Synpcc7942_0973 0.69 -1.2 980,570 - ugd Synpcc7942_0973 0.69 +0.1 980,570 - ugd Synpcc7942_0973 0.69 +0.5 980,581 + ugd Synpcc7942_0973 0.70 -0.9 980,590 - ugd Synpcc7942_0973 0.71 +0.0 980,629 + ugd Synpcc7942_0973 0.74 -0.1 980,637 - ugd Synpcc7942_0973 0.75 +1.2 980,639 + ugd Synpcc7942_0973 0.75 -0.5 980,639 + ugd Synpcc7942_0973 0.75 +1.9 980,647 - ugd Synpcc7942_0973 0.76 +2.2 980,647 - ugd Synpcc7942_0973 0.76 -2.8 980,657 - ugd Synpcc7942_0973 0.77 -1.4 980,697 - ugd Synpcc7942_0973 0.80 +1.5 980,744 - ugd Synpcc7942_0973 0.84 -0.6 980,746 - ugd Synpcc7942_0973 0.84 +2.4
Or see this region's nucleotide sequence