Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0707

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0705 and cobL are separated by 6 nucleotidescobL and cad overlap by 20 nucleotidescad and Synpcc7942_0708 are separated by 66 nucleotides Synpcc7942_0705: Synpcc7942_0705 - hypothetical protein, at 695,935 to 696,570 _0705 Synpcc7942_0706: cobL - precorrin-6B methylase, at 696,577 to 697,191 cobL Synpcc7942_0707: cad - arginine decarboxylase, at 697,172 to 698,641 cad Synpcc7942_0708: Synpcc7942_0708 - hypothetical protein, at 698,708 to 700,459 _0708 Position (kb) 697 698 699Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 696.209 kb on - strand, within Synpcc7942_0705at 696.213 kb on + strand, within Synpcc7942_0705at 696.301 kb on - strand, within Synpcc7942_0705at 696.371 kb on - strand, within Synpcc7942_0705at 696.387 kb on + strand, within Synpcc7942_0705at 696.397 kb on + strand, within Synpcc7942_0705at 696.397 kb on + strand, within Synpcc7942_0705at 696.403 kb on - strand, within Synpcc7942_0705at 696.464 kb on + strand, within Synpcc7942_0705at 696.464 kb on - strand, within Synpcc7942_0705at 696.466 kb on + strand, within Synpcc7942_0705at 696.474 kb on - strand, within Synpcc7942_0705at 696.474 kb on - strandat 696.474 kb on - strand, within Synpcc7942_0705at 696.719 kb on + strand, within cobLat 696.722 kb on + strand, within cobLat 696.722 kb on + strand, within cobLat 696.724 kb on + strand, within cobLat 696.748 kb on + strand, within cobLat 696.756 kb on - strand, within cobLat 696.756 kb on - strand, within cobLat 696.770 kb on + strand, within cobLat 696.799 kb on - strand, within cobLat 696.799 kb on - strand, within cobLat 696.837 kb on + strand, within cobLat 696.845 kb on - strand, within cobLat 696.866 kb on - strand, within cobLat 696.888 kb on - strand, within cobLat 696.896 kb on + strand, within cobLat 696.923 kb on - strand, within cobLat 696.926 kb on + strand, within cobLat 696.930 kb on + strand, within cobLat 696.955 kb on - strand, within cobLat 696.983 kb on + strand, within cobLat 696.983 kb on + strand, within cobLat 697.040 kb on + strand, within cobLat 697.040 kb on - strand, within cobLat 697.055 kb on - strand, within cobLat 697.135 kb on - strandat 697.144 kb on + strandat 697.154 kb on + strandat 697.159 kb on + strandat 697.162 kb on - strandat 697.162 kb on - strandat 697.178 kb on - strandat 697.180 kb on + strandat 697.180 kb on + strandat 697.183 kb on - strandat 697.187 kb on + strandat 697.188 kb on - strandat 697.198 kb on + strandat 697.205 kb on + strandat 697.205 kb on + strandat 697.213 kb on - strandat 697.226 kb on + strandat 697.349 kb on + strandat 697.395 kb on - strand, within cadat 697.432 kb on + strand, within cadat 697.500 kb on - strand, within cadat 697.502 kb on - strand, within cadat 697.517 kb on + strand, within cadat 697.519 kb on - strand, within cadat 697.529 kb on - strand, within cadat 697.583 kb on - strand, within cadat 697.678 kb on + strand, within cadat 697.720 kb on + strand, within cadat 697.744 kb on - strand, within cadat 697.828 kb on + strand, within cadat 697.878 kb on - strand, within cadat 697.909 kb on + strand, within cadat 697.914 kb on + strand, within cadat 697.922 kb on - strand, within cadat 697.945 kb on - strand, within cadat 698.042 kb on + strand, within cadat 698.124 kb on + strand, within cadat 698.251 kb on - strand, within cadat 698.412 kb on + strand, within cadat 698.438 kb on - strand, within cadat 698.442 kb on + strand, within cadat 698.530 kb on - strandat 698.531 kb on - strandat 698.599 kb on + strandat 698.645 kb on + strandat 698.645 kb on + strandat 698.715 kb on + strandat 698.722 kb on + strandat 698.762 kb on + strandat 698.762 kb on + strandat 698.786 kb on - strandat 698.838 kb on + strandat 698.876 kb on + strandat 698.878 kb on + strandat 698.878 kb on + strandat 698.878 kb on + strandat 698.878 kb on + strandat 698.878 kb on + strandat 698.878 kb on + strandat 698.886 kb on - strand, within Synpcc7942_0708at 698.886 kb on - strandat 698.886 kb on - strand, within Synpcc7942_0708at 698.886 kb on - strand, within Synpcc7942_0708at 698.889 kb on + strand, within Synpcc7942_0708at 698.911 kb on - strand, within Synpcc7942_0708at 698.919 kb on - strand, within Synpcc7942_0708at 698.920 kb on + strand, within Synpcc7942_0708at 698.925 kb on + strand, within Synpcc7942_0708at 698.955 kb on + strand, within Synpcc7942_0708at 698.956 kb on + strand, within Synpcc7942_0708at 698.969 kb on - strand, within Synpcc7942_0708at 698.989 kb on - strand, within Synpcc7942_0708at 699.008 kb on - strand, within Synpcc7942_0708at 699.127 kb on - strand, within Synpcc7942_0708at 699.149 kb on - strand, within Synpcc7942_0708at 699.172 kb on - strand, within Synpcc7942_0708at 699.183 kb on - strand, within Synpcc7942_0708at 699.229 kb on - strand, within Synpcc7942_0708at 699.236 kb on - strand, within Synpcc7942_0708at 699.514 kb on - strand, within Synpcc7942_0708at 699.635 kb on + strand, within Synpcc7942_0708

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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696,209 - Synpcc7942_0705 0.43 +0.2
696,213 + Synpcc7942_0705 0.44 +0.6
696,301 - Synpcc7942_0705 0.58 +0.5
696,371 - Synpcc7942_0705 0.69 -1.2
696,387 + Synpcc7942_0705 0.71 -0.3
696,397 + Synpcc7942_0705 0.73 +1.7
696,397 + Synpcc7942_0705 0.73 +0.3
696,403 - Synpcc7942_0705 0.74 +0.7
696,464 + Synpcc7942_0705 0.83 -1.8
696,464 - Synpcc7942_0705 0.83 -1.2
696,466 + Synpcc7942_0705 0.83 +1.0
696,474 - Synpcc7942_0705 0.85 +0.2
696,474 - +0.7
696,474 - Synpcc7942_0705 0.85 -1.1
696,719 + cobL Synpcc7942_0706 0.23 +0.8
696,722 + cobL Synpcc7942_0706 0.24 +0.4
696,722 + cobL Synpcc7942_0706 0.24 -1.7
696,724 + cobL Synpcc7942_0706 0.24 -0.0
696,748 + cobL Synpcc7942_0706 0.28 -2.2
696,756 - cobL Synpcc7942_0706 0.29 -3.3
696,756 - cobL Synpcc7942_0706 0.29 -1.3
696,770 + cobL Synpcc7942_0706 0.31 -1.2
696,799 - cobL Synpcc7942_0706 0.36 -1.2
696,799 - cobL Synpcc7942_0706 0.36 +0.1
696,837 + cobL Synpcc7942_0706 0.42 -2.8
696,845 - cobL Synpcc7942_0706 0.44 -0.7
696,866 - cobL Synpcc7942_0706 0.47 +0.4
696,888 - cobL Synpcc7942_0706 0.51 -1.4
696,896 + cobL Synpcc7942_0706 0.52 -2.0
696,923 - cobL Synpcc7942_0706 0.56 -2.8
696,926 + cobL Synpcc7942_0706 0.57 -0.4
696,930 + cobL Synpcc7942_0706 0.57 +1.3
696,955 - cobL Synpcc7942_0706 0.61 -1.2
696,983 + cobL Synpcc7942_0706 0.66 -1.8
696,983 + cobL Synpcc7942_0706 0.66 -1.2
697,040 + cobL Synpcc7942_0706 0.75 -1.4
697,040 - cobL Synpcc7942_0706 0.75 -1.7
697,055 - cobL Synpcc7942_0706 0.78 -1.8
697,135 - -1.3
697,144 + +0.1
697,154 + -2.7
697,159 + +1.0
697,162 - -1.5
697,162 - -3.5
697,178 - -2.3
697,180 + -2.3
697,180 + -1.2
697,183 - +0.2
697,187 + -0.0
697,188 - +0.8
697,198 + -0.6
697,205 + -1.8
697,205 + +0.5
697,213 - -1.4
697,226 + -1.9
697,349 + -0.6
697,395 - cad Synpcc7942_0707 0.15 -2.7
697,432 + cad Synpcc7942_0707 0.18 -0.0
697,500 - cad Synpcc7942_0707 0.22 -0.5
697,502 - cad Synpcc7942_0707 0.22 +0.2
697,517 + cad Synpcc7942_0707 0.23 -0.7
697,519 - cad Synpcc7942_0707 0.24 -3.2
697,529 - cad Synpcc7942_0707 0.24 -1.8
697,583 - cad Synpcc7942_0707 0.28 -1.2
697,678 + cad Synpcc7942_0707 0.34 -2.0
697,720 + cad Synpcc7942_0707 0.37 -2.7
697,744 - cad Synpcc7942_0707 0.39 -1.9
697,828 + cad Synpcc7942_0707 0.45 -1.8
697,878 - cad Synpcc7942_0707 0.48 -1.9
697,909 + cad Synpcc7942_0707 0.50 -0.5
697,914 + cad Synpcc7942_0707 0.50 -0.6
697,922 - cad Synpcc7942_0707 0.51 -0.4
697,945 - cad Synpcc7942_0707 0.53 -2.6
698,042 + cad Synpcc7942_0707 0.59 -1.5
698,124 + cad Synpcc7942_0707 0.65 -1.4
698,251 - cad Synpcc7942_0707 0.73 -2.7
698,412 + cad Synpcc7942_0707 0.84 -1.4
698,438 - cad Synpcc7942_0707 0.86 -3.1
698,442 + cad Synpcc7942_0707 0.86 -1.4
698,530 - -2.2
698,531 - -1.8
698,599 + -2.5
698,645 + +0.5
698,645 + +2.3
698,715 + -3.0
698,722 + +1.7
698,762 + +1.6
698,762 + -2.0
698,786 - -0.7
698,838 + -0.5
698,876 + +1.1
698,878 + -2.1
698,878 + -1.0
698,878 + -0.9
698,878 + +1.0
698,878 + -2.0
698,878 + +1.2
698,886 - Synpcc7942_0708 0.10 -2.3
698,886 - -0.3
698,886 - Synpcc7942_0708 0.10 -0.8
698,886 - Synpcc7942_0708 0.10 -0.0
698,889 + Synpcc7942_0708 0.10 -0.4
698,911 - Synpcc7942_0708 0.12 -1.2
698,919 - Synpcc7942_0708 0.12 +0.5
698,920 + Synpcc7942_0708 0.12 +0.7
698,925 + Synpcc7942_0708 0.12 +2.0
698,955 + Synpcc7942_0708 0.14 +1.7
698,956 + Synpcc7942_0708 0.14 -1.6
698,969 - Synpcc7942_0708 0.15 -1.8
698,989 - Synpcc7942_0708 0.16 -0.8
699,008 - Synpcc7942_0708 0.17 -0.2
699,127 - Synpcc7942_0708 0.24 -0.4
699,149 - Synpcc7942_0708 0.25 +0.8
699,172 - Synpcc7942_0708 0.26 +0.8
699,183 - Synpcc7942_0708 0.27 +1.2
699,229 - Synpcc7942_0708 0.30 -2.7
699,236 - Synpcc7942_0708 0.30 -2.6
699,514 - Synpcc7942_0708 0.46 +0.5
699,635 + Synpcc7942_0708 0.53 -0.2

Or see this region's nucleotide sequence