Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0548

Experiment: L-Phenylalanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntnha4 and Synpcc7942_0547 are separated by 33 nucleotidesSynpcc7942_0547 and Synpcc7942_0548 are separated by 56 nucleotidesSynpcc7942_0548 and Synpcc7942_0549 are separated by 100 nucleotidesSynpcc7942_0549 and Synpcc7942_0550 are separated by 8 nucleotides Synpcc7942_0546: nha4 - Na+/H+ antiporter, at 527,876 to 530,023 nha4 Synpcc7942_0547: Synpcc7942_0547 - hypothetical protein, at 530,057 to 530,566 _0547 Synpcc7942_0548: Synpcc7942_0548 - hypothetical protein, at 530,623 to 531,783 _0548 Synpcc7942_0549: Synpcc7942_0549 - hypothetical protein, at 531,884 to 532,645 _0549 Synpcc7942_0550: Synpcc7942_0550 - hypothetical protein, at 532,654 to 533,037 _0550 Position (kb) 530 531 532Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 529.665 kb on + strand, within nha4at 529.685 kb on - strand, within nha4at 529.729 kb on - strand, within nha4at 529.739 kb on - strand, within nha4at 529.739 kb on - strand, within nha4at 529.764 kb on + strand, within nha4at 529.772 kb on - strand, within nha4at 529.787 kb on - strand, within nha4at 529.797 kb on + strand, within nha4at 529.797 kb on + strand, within nha4at 529.814 kb on + strandat 529.814 kb on + strandat 529.841 kb on + strandat 529.861 kb on + strandat 529.866 kb on + strandat 529.866 kb on + strandat 529.872 kb on - strandat 529.872 kb on - strandat 529.876 kb on + strandat 529.925 kb on + strandat 529.941 kb on - strandat 529.948 kb on + strandat 529.966 kb on - strandat 530.178 kb on + strand, within Synpcc7942_0547at 530.246 kb on + strand, within Synpcc7942_0547at 530.255 kb on + strand, within Synpcc7942_0547at 530.261 kb on + strand, within Synpcc7942_0547at 530.299 kb on - strand, within Synpcc7942_0547at 530.332 kb on + strand, within Synpcc7942_0547at 530.391 kb on + strand, within Synpcc7942_0547at 530.415 kb on - strand, within Synpcc7942_0547at 530.550 kb on + strandat 530.558 kb on - strandat 530.588 kb on - strandat 530.588 kb on - strandat 530.588 kb on - strandat 530.605 kb on - strandat 530.613 kb on - strandat 530.621 kb on + strandat 530.629 kb on - strandat 530.629 kb on - strandat 530.802 kb on - strand, within Synpcc7942_0548at 530.952 kb on + strand, within Synpcc7942_0548at 531.069 kb on - strand, within Synpcc7942_0548at 531.138 kb on + strand, within Synpcc7942_0548at 531.215 kb on + strand, within Synpcc7942_0548at 531.223 kb on - strand, within Synpcc7942_0548at 531.223 kb on - strand, within Synpcc7942_0548at 531.223 kb on - strand, within Synpcc7942_0548at 531.263 kb on + strand, within Synpcc7942_0548at 531.284 kb on + strand, within Synpcc7942_0548at 531.292 kb on - strand, within Synpcc7942_0548at 531.329 kb on - strand, within Synpcc7942_0548at 531.367 kb on - strand, within Synpcc7942_0548at 531.407 kb on + strand, within Synpcc7942_0548at 531.442 kb on + strand, within Synpcc7942_0548at 531.454 kb on + strand, within Synpcc7942_0548at 531.456 kb on + strand, within Synpcc7942_0548at 531.462 kb on - strand, within Synpcc7942_0548at 531.464 kb on - strand, within Synpcc7942_0548at 531.466 kb on + strand, within Synpcc7942_0548at 531.469 kb on - strand, within Synpcc7942_0548at 531.475 kb on - strand, within Synpcc7942_0548at 531.563 kb on + strand, within Synpcc7942_0548at 531.563 kb on + strand, within Synpcc7942_0548at 531.595 kb on + strand, within Synpcc7942_0548at 531.607 kb on + strand, within Synpcc7942_0548at 531.628 kb on + strand, within Synpcc7942_0548at 531.683 kb on + strandat 531.683 kb on + strandat 531.822 kb on + strandat 531.828 kb on - strandat 531.839 kb on - strandat 531.851 kb on - strandat 532.611 kb on + strandat 532.611 kb on + strandat 532.655 kb on + strandat 532.737 kb on - strand, within Synpcc7942_0550at 532.742 kb on + strand, within Synpcc7942_0550at 532.742 kb on - strand, within Synpcc7942_0550at 532.772 kb on - strand, within Synpcc7942_0550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
remove
529,665 + nha4 Synpcc7942_0546 0.83 -1.3
529,685 - nha4 Synpcc7942_0546 0.84 -3.4
529,729 - nha4 Synpcc7942_0546 0.86 -0.0
529,739 - nha4 Synpcc7942_0546 0.87 +1.4
529,739 - nha4 Synpcc7942_0546 0.87 +1.7
529,764 + nha4 Synpcc7942_0546 0.88 -1.2
529,772 - nha4 Synpcc7942_0546 0.88 -0.8
529,787 - nha4 Synpcc7942_0546 0.89 +1.9
529,797 + nha4 Synpcc7942_0546 0.89 -0.4
529,797 + nha4 Synpcc7942_0546 0.89 -0.8
529,814 + -0.1
529,814 + -0.2
529,841 + -0.5
529,861 + +2.0
529,866 + +1.0
529,866 + -5.0
529,872 - +2.0
529,872 - -0.5
529,876 + +1.2
529,925 + +1.0
529,941 - +1.2
529,948 + -1.5
529,966 - -0.9
530,178 + Synpcc7942_0547 0.24 -0.5
530,246 + Synpcc7942_0547 0.37 +0.1
530,255 + Synpcc7942_0547 0.39 -0.4
530,261 + Synpcc7942_0547 0.40 -0.9
530,299 - Synpcc7942_0547 0.47 -2.3
530,332 + Synpcc7942_0547 0.54 -0.7
530,391 + Synpcc7942_0547 0.65 -0.7
530,415 - Synpcc7942_0547 0.70 +2.5
530,550 + -0.7
530,558 - -0.8
530,588 - -1.2
530,588 - +0.5
530,588 - -0.2
530,605 - +0.2
530,613 - +2.3
530,621 + -0.4
530,629 - -2.2
530,629 - +0.1
530,802 - Synpcc7942_0548 0.15 -0.8
530,952 + Synpcc7942_0548 0.28 -2.1
531,069 - Synpcc7942_0548 0.38 -0.8
531,138 + Synpcc7942_0548 0.44 -0.6
531,215 + Synpcc7942_0548 0.51 -2.6
531,223 - Synpcc7942_0548 0.52 -0.4
531,223 - Synpcc7942_0548 0.52 -1.0
531,223 - Synpcc7942_0548 0.52 -0.4
531,263 + Synpcc7942_0548 0.55 -2.1
531,284 + Synpcc7942_0548 0.57 +0.1
531,292 - Synpcc7942_0548 0.58 -0.0
531,329 - Synpcc7942_0548 0.61 -1.8
531,367 - Synpcc7942_0548 0.64 +1.0
531,407 + Synpcc7942_0548 0.68 -2.2
531,442 + Synpcc7942_0548 0.71 -0.2
531,454 + Synpcc7942_0548 0.72 -2.2
531,456 + Synpcc7942_0548 0.72 -2.4
531,462 - Synpcc7942_0548 0.72 -2.1
531,464 - Synpcc7942_0548 0.72 -1.5
531,466 + Synpcc7942_0548 0.73 -0.7
531,469 - Synpcc7942_0548 0.73 -1.7
531,475 - Synpcc7942_0548 0.73 +0.1
531,563 + Synpcc7942_0548 0.81 -0.6
531,563 + Synpcc7942_0548 0.81 +0.0
531,595 + Synpcc7942_0548 0.84 -2.4
531,607 + Synpcc7942_0548 0.85 +0.6
531,628 + Synpcc7942_0548 0.87 -1.1
531,683 + -0.7
531,683 + +0.4
531,822 + +2.3
531,828 - +0.2
531,839 - +3.1
531,851 - -0.9
532,611 + -1.4
532,611 + -1.3
532,655 + -0.0
532,737 - Synpcc7942_0550 0.22 +1.7
532,742 + Synpcc7942_0550 0.23 -0.6
532,742 - Synpcc7942_0550 0.23 -0.3
532,772 - Synpcc7942_0550 0.31 -1.9

Or see this region's nucleotide sequence