Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0162 and Synpcc7942_0163 are separated by 5 nucleotides Synpcc7942_0163 and Synpcc7942_0164 are separated by 37 nucleotides Synpcc7942_0164 and ycf36 are separated by 18 nucleotides ycf36 and Synpcc7942_0166 overlap by 4 nucleotides
Synpcc7942_0162: Synpcc7942_0162 - hypothetical protein, at 163,405 to 163,755
_0162
Synpcc7942_0163: Synpcc7942_0163 - hypothetical protein, at 163,761 to 164,510
_0163
Synpcc7942_0164: Synpcc7942_0164 - Iojap-related protein, at 164,548 to 164,967
_0164
Synpcc7942_0165: ycf36 - hypothetical protein, at 164,986 to 165,486
ycf36
Synpcc7942_0166: Synpcc7942_0166 - hypothetical protein, at 165,483 to 166,436
_0166
Position (kb) 164
165 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 163.572 kb on - strand, within Synpcc7942_0162 at 163.578 kb on + strand, within Synpcc7942_0162 at 163.578 kb on + strand, within Synpcc7942_0162 at 163.581 kb on - strand, within Synpcc7942_0162 at 163.583 kb on + strand at 163.591 kb on - strand, within Synpcc7942_0162 at 163.617 kb on + strand, within Synpcc7942_0162 at 163.653 kb on + strand, within Synpcc7942_0162 at 163.668 kb on - strand, within Synpcc7942_0162 at 163.673 kb on + strand, within Synpcc7942_0162 at 163.681 kb on - strand, within Synpcc7942_0162 at 163.681 kb on - strand, within Synpcc7942_0162 at 163.681 kb on - strand, within Synpcc7942_0162 at 163.683 kb on + strand, within Synpcc7942_0162 at 163.686 kb on - strand, within Synpcc7942_0162 at 163.687 kb on - strand, within Synpcc7942_0162 at 163.702 kb on + strand, within Synpcc7942_0162 at 163.707 kb on - strand, within Synpcc7942_0162 at 163.721 kb on + strand at 163.741 kb on - strand at 163.749 kb on + strand at 163.757 kb on - strand at 163.807 kb on + strand at 163.858 kb on - strand, within Synpcc7942_0163 at 163.860 kb on - strand, within Synpcc7942_0163 at 163.871 kb on + strand, within Synpcc7942_0163 at 163.871 kb on + strand, within Synpcc7942_0163 at 163.871 kb on + strand, within Synpcc7942_0163 at 163.876 kb on + strand, within Synpcc7942_0163 at 163.879 kb on - strand, within Synpcc7942_0163 at 163.879 kb on - strand, within Synpcc7942_0163 at 163.879 kb on - strand, within Synpcc7942_0163 at 163.897 kb on + strand, within Synpcc7942_0163 at 163.897 kb on + strand, within Synpcc7942_0163 at 163.905 kb on - strand, within Synpcc7942_0163 at 163.905 kb on - strand, within Synpcc7942_0163 at 163.922 kb on - strand, within Synpcc7942_0163 at 163.923 kb on - strand, within Synpcc7942_0163 at 163.923 kb on - strand, within Synpcc7942_0163 at 163.929 kb on + strand at 163.934 kb on + strand, within Synpcc7942_0163 at 163.968 kb on + strand, within Synpcc7942_0163 at 164.028 kb on - strand, within Synpcc7942_0163 at 164.050 kb on + strand, within Synpcc7942_0163 at 164.052 kb on + strand, within Synpcc7942_0163 at 164.069 kb on + strand, within Synpcc7942_0163 at 164.076 kb on - strand, within Synpcc7942_0163 at 164.085 kb on + strand, within Synpcc7942_0163 at 164.085 kb on + strand, within Synpcc7942_0163 at 164.085 kb on + strand, within Synpcc7942_0163 at 164.097 kb on + strand, within Synpcc7942_0163 at 164.097 kb on + strand, within Synpcc7942_0163 at 164.097 kb on + strand, within Synpcc7942_0163 at 164.105 kb on - strand, within Synpcc7942_0163 at 164.121 kb on + strand, within Synpcc7942_0163 at 164.148 kb on + strand, within Synpcc7942_0163 at 164.148 kb on + strand, within Synpcc7942_0163 at 164.153 kb on - strand, within Synpcc7942_0163 at 164.219 kb on + strand, within Synpcc7942_0163 at 164.227 kb on + strand, within Synpcc7942_0163 at 164.236 kb on + strand, within Synpcc7942_0163 at 164.298 kb on + strand, within Synpcc7942_0163 at 164.298 kb on + strand, within Synpcc7942_0163 at 164.305 kb on + strand, within Synpcc7942_0163 at 164.306 kb on - strand, within Synpcc7942_0163 at 164.344 kb on + strand, within Synpcc7942_0163 at 164.385 kb on - strand, within Synpcc7942_0163 at 164.390 kb on + strand, within Synpcc7942_0163 at 164.418 kb on + strand, within Synpcc7942_0163 at 164.426 kb on - strand, within Synpcc7942_0163 at 164.476 kb on + strand at 164.484 kb on - strand at 164.497 kb on - strand at 164.499 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.508 kb on - strand at 164.508 kb on - strand at 164.508 kb on - strand at 164.510 kb on + strand at 164.513 kb on - strand at 164.517 kb on + strand at 164.525 kb on - strand at 164.551 kb on + strand at 164.551 kb on + strand at 164.559 kb on - strand at 164.559 kb on - strand at 164.559 kb on - strand at 164.598 kb on + strand, within Synpcc7942_0164 at 164.598 kb on + strand, within Synpcc7942_0164 at 164.601 kb on - strand, within Synpcc7942_0164 at 164.607 kb on - strand, within Synpcc7942_0164 at 164.666 kb on + strand, within Synpcc7942_0164 at 164.666 kb on + strand, within Synpcc7942_0164 at 164.666 kb on + strand, within Synpcc7942_0164 at 164.674 kb on - strand, within Synpcc7942_0164 at 164.674 kb on - strand, within Synpcc7942_0164 at 164.676 kb on + strand, within Synpcc7942_0164 at 164.795 kb on + strand, within Synpcc7942_0164 at 164.803 kb on - strand, within Synpcc7942_0164 at 164.816 kb on + strand, within Synpcc7942_0164 at 164.824 kb on - strand, within Synpcc7942_0164 at 164.832 kb on - strand, within Synpcc7942_0164 at 164.832 kb on - strand at 164.832 kb on - strand, within Synpcc7942_0164 at 164.914 kb on - strand, within Synpcc7942_0164 at 164.939 kb on + strand at 164.954 kb on + strand at 164.994 kb on + strand at 165.029 kb on - strand at 165.035 kb on + strand at 165.051 kb on - strand, within ycf36 at 165.069 kb on + strand, within ycf36 at 165.072 kb on - strand, within ycf36 at 165.090 kb on - strand at 165.090 kb on - strand, within ycf36 at 165.093 kb on + strand, within ycf36 at 165.096 kb on - strand, within ycf36 at 165.098 kb on + strand, within ycf36 at 165.100 kb on - strand, within ycf36 at 165.105 kb on + strand, within ycf36 at 165.113 kb on + strand, within ycf36 at 165.113 kb on - strand, within ycf36 at 165.118 kb on + strand, within ycf36 at 165.126 kb on - strand, within ycf36 at 165.126 kb on - strand, within ycf36 at 165.126 kb on - strand, within ycf36 at 165.137 kb on - strand, within ycf36 at 165.142 kb on - strand, within ycf36 at 165.178 kb on + strand, within ycf36 at 165.179 kb on + strand, within ycf36 at 165.186 kb on - strand, within ycf36 at 165.186 kb on - strand, within ycf36 at 165.186 kb on - strand, within ycf36 at 165.195 kb on + strand, within ycf36 at 165.209 kb on + strand, within ycf36 at 165.254 kb on - strand, within ycf36 at 165.288 kb on + strand, within ycf36 at 165.296 kb on - strand, within ycf36 at 165.312 kb on - strand, within ycf36 at 165.367 kb on + strand, within ycf36 at 165.452 kb on - strand at 165.468 kb on + strand at 165.508 kb on - strand at 165.593 kb on - strand, within Synpcc7942_0166 at 165.602 kb on + strand, within Synpcc7942_0166 at 165.602 kb on + strand, within Synpcc7942_0166 at 165.618 kb on + strand, within Synpcc7942_0166 at 165.634 kb on - strand, within Synpcc7942_0166 at 165.655 kb on - strand, within Synpcc7942_0166 at 165.662 kb on + strand, within Synpcc7942_0166 at 165.662 kb on + strand, within Synpcc7942_0166 at 165.674 kb on + strand, within Synpcc7942_0166 at 165.688 kb on - strand, within Synpcc7942_0166 at 165.697 kb on + strand, within Synpcc7942_0166 at 165.697 kb on + strand, within Synpcc7942_0166 at 165.705 kb on - strand, within Synpcc7942_0166 at 165.820 kb on + strand, within Synpcc7942_0166 at 165.834 kb on - strand, within Synpcc7942_0166 at 165.839 kb on + strand, within Synpcc7942_0166 at 165.846 kb on + strand, within Synpcc7942_0166 at 165.846 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on - strand, within Synpcc7942_0166 at 165.855 kb on - strand, within Synpcc7942_0166 at 165.860 kb on - strand, within Synpcc7942_0166 at 165.892 kb on + strand, within Synpcc7942_0166 at 165.905 kb on + strand, within Synpcc7942_0166
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 163,572 - Synpcc7942_0162 0.48 +1.2 163,578 + Synpcc7942_0162 0.49 +1.2 163,578 + Synpcc7942_0162 0.49 -1.1 163,581 - Synpcc7942_0162 0.50 +1.8 163,583 + +1.7 163,591 - Synpcc7942_0162 0.53 +2.0 163,617 + Synpcc7942_0162 0.60 +0.0 163,653 + Synpcc7942_0162 0.71 +1.3 163,668 - Synpcc7942_0162 0.75 -1.1 163,673 + Synpcc7942_0162 0.76 +2.5 163,681 - Synpcc7942_0162 0.79 +0.3 163,681 - Synpcc7942_0162 0.79 +0.1 163,681 - Synpcc7942_0162 0.79 -1.1 163,683 + Synpcc7942_0162 0.79 +2.0 163,686 - Synpcc7942_0162 0.80 +0.2 163,687 - Synpcc7942_0162 0.80 +2.3 163,702 + Synpcc7942_0162 0.85 +2.9 163,707 - Synpcc7942_0162 0.86 +2.0 163,721 + +0.3 163,741 - -1.2 163,749 + -0.9 163,757 - -0.3 163,807 + -0.2 163,858 - Synpcc7942_0163 0.13 -1.2 163,860 - Synpcc7942_0163 0.13 +1.8 163,871 + Synpcc7942_0163 0.15 -0.3 163,871 + Synpcc7942_0163 0.15 -2.3 163,871 + Synpcc7942_0163 0.15 +0.4 163,876 + Synpcc7942_0163 0.15 +1.6 163,879 - Synpcc7942_0163 0.16 -0.0 163,879 - Synpcc7942_0163 0.16 +0.9 163,879 - Synpcc7942_0163 0.16 +1.9 163,897 + Synpcc7942_0163 0.18 -2.9 163,897 + Synpcc7942_0163 0.18 +0.2 163,905 - Synpcc7942_0163 0.19 -0.7 163,905 - Synpcc7942_0163 0.19 -0.7 163,922 - Synpcc7942_0163 0.21 +2.0 163,923 - Synpcc7942_0163 0.22 +2.2 163,923 - Synpcc7942_0163 0.22 +1.4 163,929 + -0.3 163,934 + Synpcc7942_0163 0.23 +1.9 163,968 + Synpcc7942_0163 0.28 +2.1 164,028 - Synpcc7942_0163 0.36 -0.3 164,050 + Synpcc7942_0163 0.39 +1.8 164,052 + Synpcc7942_0163 0.39 -0.8 164,069 + Synpcc7942_0163 0.41 -0.3 164,076 - Synpcc7942_0163 0.42 +0.6 164,085 + Synpcc7942_0163 0.43 +0.4 164,085 + Synpcc7942_0163 0.43 +2.3 164,085 + Synpcc7942_0163 0.43 -1.4 164,097 + Synpcc7942_0163 0.45 -1.3 164,097 + Synpcc7942_0163 0.45 +2.0 164,097 + Synpcc7942_0163 0.45 -1.9 164,105 - Synpcc7942_0163 0.46 -0.8 164,121 + Synpcc7942_0163 0.48 -0.3 164,148 + Synpcc7942_0163 0.52 -1.9 164,148 + Synpcc7942_0163 0.52 -0.1 164,153 - Synpcc7942_0163 0.52 -1.8 164,219 + Synpcc7942_0163 0.61 +0.3 164,227 + Synpcc7942_0163 0.62 -2.7 164,236 + Synpcc7942_0163 0.63 -2.2 164,298 + Synpcc7942_0163 0.72 -1.2 164,298 + Synpcc7942_0163 0.72 -0.0 164,305 + Synpcc7942_0163 0.73 +0.5 164,306 - Synpcc7942_0163 0.73 -1.3 164,344 + Synpcc7942_0163 0.78 -0.2 164,385 - Synpcc7942_0163 0.83 -1.8 164,390 + Synpcc7942_0163 0.84 -0.6 164,418 + Synpcc7942_0163 0.88 +1.5 164,426 - Synpcc7942_0163 0.89 -0.8 164,476 + +1.5 164,484 - -2.8 164,497 - -1.1 164,499 + -0.1 164,500 + -1.1 164,500 + +2.2 164,500 + -0.4 164,500 + -1.6 164,500 + +0.6 164,500 + -0.9 164,508 - -1.8 164,508 - -2.0 164,508 - -0.0 164,510 + -0.3 164,513 - -0.8 164,517 + +1.2 164,525 - +1.4 164,551 + +1.9 164,551 + -0.1 164,559 - -0.8 164,559 - -1.1 164,559 - +2.0 164,598 + Synpcc7942_0164 0.12 +1.2 164,598 + Synpcc7942_0164 0.12 -0.2 164,601 - Synpcc7942_0164 0.13 -2.6 164,607 - Synpcc7942_0164 0.14 +0.1 164,666 + Synpcc7942_0164 0.28 -0.5 164,666 + Synpcc7942_0164 0.28 -1.0 164,666 + Synpcc7942_0164 0.28 -2.8 164,674 - Synpcc7942_0164 0.30 -0.6 164,674 - Synpcc7942_0164 0.30 +0.2 164,676 + Synpcc7942_0164 0.30 +0.1 164,795 + Synpcc7942_0164 0.59 -2.0 164,803 - Synpcc7942_0164 0.61 -0.9 164,816 + Synpcc7942_0164 0.64 -1.3 164,824 - Synpcc7942_0164 0.66 +0.4 164,832 - Synpcc7942_0164 0.68 -2.3 164,832 - +1.1 164,832 - Synpcc7942_0164 0.68 -1.9 164,914 - Synpcc7942_0164 0.87 -1.2 164,939 + -1.0 164,954 + -1.0 164,994 + +0.0 165,029 - -2.2 165,035 + -1.6 165,051 - ycf36 Synpcc7942_0165 0.13 -0.2 165,069 + ycf36 Synpcc7942_0165 0.17 -0.1 165,072 - ycf36 Synpcc7942_0165 0.17 -0.8 165,090 - +1.2 165,090 - ycf36 Synpcc7942_0165 0.21 -2.0 165,093 + ycf36 Synpcc7942_0165 0.21 -3.0 165,096 - ycf36 Synpcc7942_0165 0.22 -1.2 165,098 + ycf36 Synpcc7942_0165 0.22 +2.6 165,100 - ycf36 Synpcc7942_0165 0.23 +1.1 165,105 + ycf36 Synpcc7942_0165 0.24 -2.3 165,113 + ycf36 Synpcc7942_0165 0.25 -0.9 165,113 - ycf36 Synpcc7942_0165 0.25 -1.3 165,118 + ycf36 Synpcc7942_0165 0.26 +1.2 165,126 - ycf36 Synpcc7942_0165 0.28 -2.5 165,126 - ycf36 Synpcc7942_0165 0.28 -3.4 165,126 - ycf36 Synpcc7942_0165 0.28 +1.4 165,137 - ycf36 Synpcc7942_0165 0.30 -2.0 165,142 - ycf36 Synpcc7942_0165 0.31 -1.5 165,178 + ycf36 Synpcc7942_0165 0.38 -1.8 165,179 + ycf36 Synpcc7942_0165 0.39 -3.2 165,186 - ycf36 Synpcc7942_0165 0.40 +0.6 165,186 - ycf36 Synpcc7942_0165 0.40 -0.7 165,186 - ycf36 Synpcc7942_0165 0.40 -3.1 165,195 + ycf36 Synpcc7942_0165 0.42 +0.7 165,209 + ycf36 Synpcc7942_0165 0.45 -1.0 165,254 - ycf36 Synpcc7942_0165 0.53 -2.9 165,288 + ycf36 Synpcc7942_0165 0.60 -1.1 165,296 - ycf36 Synpcc7942_0165 0.62 -1.7 165,312 - ycf36 Synpcc7942_0165 0.65 +1.8 165,367 + ycf36 Synpcc7942_0165 0.76 -0.2 165,452 - +0.1 165,468 + -0.8 165,508 - +1.9 165,593 - Synpcc7942_0166 0.12 +0.8 165,602 + Synpcc7942_0166 0.12 -2.1 165,602 + Synpcc7942_0166 0.12 -1.3 165,618 + Synpcc7942_0166 0.14 -3.9 165,634 - Synpcc7942_0166 0.16 -2.2 165,655 - Synpcc7942_0166 0.18 -1.3 165,662 + Synpcc7942_0166 0.19 -0.8 165,662 + Synpcc7942_0166 0.19 -0.5 165,674 + Synpcc7942_0166 0.20 -0.3 165,688 - Synpcc7942_0166 0.21 -1.0 165,697 + Synpcc7942_0166 0.22 -2.7 165,697 + Synpcc7942_0166 0.22 +0.2 165,705 - Synpcc7942_0166 0.23 -2.7 165,820 + Synpcc7942_0166 0.35 -1.1 165,834 - Synpcc7942_0166 0.37 -2.2 165,839 + Synpcc7942_0166 0.37 -2.7 165,846 + Synpcc7942_0166 0.38 +0.3 165,846 + Synpcc7942_0166 0.38 -1.1 165,852 + Synpcc7942_0166 0.39 -1.4 165,852 + Synpcc7942_0166 0.39 -0.7 165,852 + Synpcc7942_0166 0.39 -1.8 165,852 - Synpcc7942_0166 0.39 -0.0 165,855 - Synpcc7942_0166 0.39 -1.1 165,860 - Synpcc7942_0166 0.40 -0.8 165,892 + Synpcc7942_0166 0.43 -1.2 165,905 + Synpcc7942_0166 0.44 +0.5
Or see this region's nucleotide sequence