Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0063 and Synpcc7942_0064 overlap by 4 nucleotides Synpcc7942_0064 and infC are separated by 116 nucleotides infC and Synpcc7942_0066 are separated by 116 nucleotides
Synpcc7942_0063: Synpcc7942_0063 - dual specificity protein phosphatase, at 64,266 to 64,706
_0063
Synpcc7942_0064: Synpcc7942_0064 - hypothetical protein, at 64,703 to 64,870
_0064
Synpcc7942_0065: infC - translation initiation factor IF-3, at 64,987 to 65,541
infC
Synpcc7942_0066: Synpcc7942_0066 - hypothetical protein, at 65,658 to 67,172
_0066
Position (kb) 64
65 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 63.748 kb on + strand at 63.748 kb on + strand at 63.750 kb on - strand at 63.756 kb on - strand at 63.774 kb on + strand at 63.782 kb on - strand at 63.814 kb on + strand at 63.819 kb on - strand at 63.821 kb on - strand at 63.842 kb on + strand at 63.873 kb on - strand at 63.892 kb on + strand at 63.908 kb on + strand at 63.916 kb on - strand at 63.922 kb on - strand at 63.969 kb on - strand at 63.969 kb on - strand at 63.971 kb on + strand at 63.976 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.979 kb on - strand at 63.981 kb on + strand at 63.986 kb on + strand at 63.989 kb on - strand at 63.991 kb on - strand at 63.994 kb on - strand at 63.994 kb on - strand at 63.994 kb on - strand at 63.994 kb on - strand at 63.996 kb on + strand at 63.996 kb on + strand at 64.004 kb on - strand at 64.004 kb on - strand at 64.010 kb on + strand at 64.018 kb on - strand at 64.025 kb on + strand at 64.038 kb on - strand at 64.079 kb on + strand at 64.085 kb on - strand at 64.087 kb on - strand at 64.106 kb on + strand at 64.160 kb on + strand at 64.168 kb on - strand at 64.168 kb on - strand at 64.171 kb on + strand at 64.179 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.196 kb on + strand at 64.196 kb on + strand at 64.244 kb on - strand at 64.244 kb on - strand at 64.253 kb on + strand at 64.261 kb on - strand at 64.261 kb on - strand at 64.263 kb on + strand at 64.272 kb on - strand at 64.291 kb on + strand at 64.296 kb on - strand at 64.359 kb on + strand, within Synpcc7942_0063 at 64.413 kb on + strand, within Synpcc7942_0063 at 64.421 kb on - strand, within Synpcc7942_0063 at 64.450 kb on + strand, within Synpcc7942_0063 at 64.452 kb on + strand, within Synpcc7942_0063 at 64.458 kb on - strand, within Synpcc7942_0063 at 64.487 kb on - strand, within Synpcc7942_0063 at 64.490 kb on + strand, within Synpcc7942_0063 at 64.501 kb on + strand, within Synpcc7942_0063 at 64.511 kb on + strand, within Synpcc7942_0063 at 64.516 kb on + strand, within Synpcc7942_0063 at 64.524 kb on - strand, within Synpcc7942_0063 at 64.524 kb on - strand, within Synpcc7942_0063 at 64.599 kb on + strand, within Synpcc7942_0063 at 64.599 kb on + strand, within Synpcc7942_0063 at 64.607 kb on - strand, within Synpcc7942_0063 at 64.607 kb on - strand, within Synpcc7942_0063 at 64.607 kb on - strand, within Synpcc7942_0063 at 64.607 kb on - strand, within Synpcc7942_0063 at 64.607 kb on - strand, within Synpcc7942_0063 at 64.609 kb on + strand, within Synpcc7942_0063 at 64.625 kb on - strand, within Synpcc7942_0063 at 64.710 kb on + strand at 64.722 kb on - strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.732 kb on - strand, within Synpcc7942_0064 at 64.732 kb on - strand, within Synpcc7942_0064 at 64.734 kb on + strand, within Synpcc7942_0064 at 64.734 kb on - strand, within Synpcc7942_0064 at 64.783 kb on - strand, within Synpcc7942_0064 at 65.691 kb on + strand at 65.700 kb on + strand at 65.708 kb on - strand at 65.731 kb on - strand at 65.761 kb on + strand at 65.847 kb on + strand, within Synpcc7942_0066 at 65.863 kb on + strand, within Synpcc7942_0066
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 63,748 + -0.6 63,748 + -0.7 63,750 - +1.0 63,756 - -0.4 63,774 + +1.8 63,782 - +1.0 63,814 + +0.9 63,819 - +0.1 63,821 - +3.0 63,842 + -0.4 63,873 - -0.7 63,892 + -1.2 63,908 + -1.2 63,916 - -1.8 63,922 - +0.0 63,969 - -0.3 63,969 - +0.5 63,971 + +2.2 63,976 + -2.0 63,978 + -1.4 63,978 + -1.6 63,978 + -2.3 63,979 - -1.0 63,981 + +2.5 63,986 + -0.9 63,989 - +0.2 63,991 - +1.4 63,994 - +3.3 63,994 - -1.1 63,994 - -0.6 63,994 - +2.7 63,996 + -0.7 63,996 + +1.7 64,004 - -1.8 64,004 - -1.4 64,010 + +2.9 64,018 - +0.3 64,025 + +0.4 64,038 - -0.7 64,079 + +1.3 64,085 - -0.8 64,087 - +0.6 64,106 + +1.7 64,160 + -1.2 64,168 - -0.9 64,168 - -1.3 64,171 + +0.2 64,179 - +0.2 64,193 - -0.3 64,193 - -0.6 64,193 - -0.9 64,196 + -0.5 64,196 + -0.3 64,244 - +2.2 64,244 - -0.5 64,253 + -0.7 64,261 - -1.1 64,261 - -0.9 64,263 + -0.3 64,272 - +0.0 64,291 + -0.1 64,296 - +0.4 64,359 + Synpcc7942_0063 0.21 -0.6 64,413 + Synpcc7942_0063 0.33 -1.1 64,421 - Synpcc7942_0063 0.35 +2.0 64,450 + Synpcc7942_0063 0.42 -1.8 64,452 + Synpcc7942_0063 0.42 -0.9 64,458 - Synpcc7942_0063 0.44 -0.1 64,487 - Synpcc7942_0063 0.50 +1.0 64,490 + Synpcc7942_0063 0.51 +1.8 64,501 + Synpcc7942_0063 0.53 -0.1 64,511 + Synpcc7942_0063 0.56 -1.5 64,516 + Synpcc7942_0063 0.57 +1.9 64,524 - Synpcc7942_0063 0.59 -0.3 64,524 - Synpcc7942_0063 0.59 -1.2 64,599 + Synpcc7942_0063 0.76 -0.1 64,599 + Synpcc7942_0063 0.76 +2.2 64,607 - Synpcc7942_0063 0.77 -0.9 64,607 - Synpcc7942_0063 0.77 +0.2 64,607 - Synpcc7942_0063 0.77 -0.0 64,607 - Synpcc7942_0063 0.77 +0.9 64,607 - Synpcc7942_0063 0.77 +0.0 64,609 + Synpcc7942_0063 0.78 -1.0 64,625 - Synpcc7942_0063 0.81 +0.1 64,710 + -1.5 64,722 - Synpcc7942_0064 0.11 +2.2 64,724 + Synpcc7942_0064 0.12 -0.1 64,724 + Synpcc7942_0064 0.12 -0.3 64,724 + Synpcc7942_0064 0.12 +1.1 64,724 + Synpcc7942_0064 0.12 -0.2 64,724 + Synpcc7942_0064 0.12 +1.0 64,732 - Synpcc7942_0064 0.17 +0.2 64,732 - Synpcc7942_0064 0.17 +1.4 64,734 + Synpcc7942_0064 0.18 +1.1 64,734 - Synpcc7942_0064 0.18 -1.7 64,783 - Synpcc7942_0064 0.48 +3.1 65,691 + +2.4 65,700 + -1.3 65,708 - -1.3 65,731 - +0.3 65,761 + +1.2 65,847 + Synpcc7942_0066 0.12 +0.9 65,863 + Synpcc7942_0066 0.14 -2.1
Or see this region's nucleotide sequence