Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4451

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4450 and Psyr_4451 are separated by 236 nucleotidesPsyr_4451 and Psyr_4452 overlap by 4 nucleotidesPsyr_4452 and Psyr_4453 are separated by 21 nucleotides Psyr_4450: Psyr_4450 - transcriptional regulator, TetR family, at 5,316,377 to 5,317,009 _4450 Psyr_4451: Psyr_4451 - UreE urease accessory, N-terminal:UreE urease accessory, C-terminal, at 5,317,246 to 5,317,746 _4451 Psyr_4452: Psyr_4452 - Urease accessory protein UreF, at 5,317,743 to 5,318,417 _4452 Psyr_4453: Psyr_4453 - Urease accessory protein UreG, at 5,318,439 to 5,319,056 _4453 Position (kb) 5317 5318Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5316.280 kb on + strandat 5316.280 kb on + strandat 5316.280 kb on + strandat 5316.281 kb on - strandat 5316.281 kb on - strandat 5316.283 kb on + strandat 5316.283 kb on + strandat 5316.325 kb on - strandat 5316.325 kb on - strandat 5316.339 kb on - strandat 5316.339 kb on - strandat 5316.356 kb on - strandat 5316.356 kb on - strandat 5316.356 kb on - strandat 5316.657 kb on + strand, within Psyr_4450at 5316.657 kb on + strand, within Psyr_4450at 5316.657 kb on + strand, within Psyr_4450at 5316.658 kb on - strand, within Psyr_4450at 5316.658 kb on - strand, within Psyr_4450at 5316.658 kb on - strand, within Psyr_4450at 5316.658 kb on - strand, within Psyr_4450at 5316.716 kb on + strand, within Psyr_4450at 5316.717 kb on - strand, within Psyr_4450at 5317.024 kb on + strandat 5317.025 kb on - strandat 5317.055 kb on - strandat 5317.063 kb on + strandat 5317.064 kb on - strandat 5317.092 kb on + strandat 5317.093 kb on - strandat 5317.119 kb on - strandat 5317.119 kb on - strandat 5317.179 kb on - strandat 5317.240 kb on + strandat 5317.240 kb on + strandat 5317.240 kb on + strandat 5317.240 kb on + strandat 5317.240 kb on + strandat 5317.241 kb on - strandat 5317.241 kb on - strandat 5317.241 kb on - strandat 5317.241 kb on - strandat 5317.514 kb on - strand, within Psyr_4451at 5317.579 kb on + strand, within Psyr_4451at 5317.579 kb on + strand, within Psyr_4451at 5317.579 kb on + strand, within Psyr_4451at 5317.579 kb on + strand, within Psyr_4451at 5317.580 kb on - strand, within Psyr_4451at 5317.580 kb on - strand, within Psyr_4451at 5317.709 kb on - strandat 5317.800 kb on + strandat 5317.807 kb on - strandat 5317.807 kb on - strandat 5317.807 kb on - strandat 5318.394 kb on + strandat 5318.395 kb on - strandat 5318.395 kb on - strandat 5318.395 kb on - strandat 5318.395 kb on - strandat 5318.536 kb on - strand, within Psyr_4453at 5318.536 kb on - strand, within Psyr_4453at 5318.561 kb on + strand, within Psyr_4453at 5318.561 kb on + strand, within Psyr_4453at 5318.562 kb on - strand, within Psyr_4453at 5318.562 kb on - strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.565 kb on + strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453at 5318.566 kb on - strand, within Psyr_4453

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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5,316,280 + -0.8
5,316,280 + -0.7
5,316,280 + +0.7
5,316,281 - -0.0
5,316,281 - -3.2
5,316,283 + -0.4
5,316,283 + -0.1
5,316,325 - -1.3
5,316,325 - +0.2
5,316,339 - +1.7
5,316,339 - -0.5
5,316,356 - -0.2
5,316,356 - -0.2
5,316,356 - +0.9
5,316,657 + Psyr_4450 0.44 +0.3
5,316,657 + Psyr_4450 0.44 +1.5
5,316,657 + Psyr_4450 0.44 -0.4
5,316,658 - Psyr_4450 0.44 +3.6
5,316,658 - Psyr_4450 0.44 +1.9
5,316,658 - Psyr_4450 0.44 +0.7
5,316,658 - Psyr_4450 0.44 +0.9
5,316,716 + Psyr_4450 0.54 +2.5
5,316,717 - Psyr_4450 0.54 -0.5
5,317,024 + -0.7
5,317,025 - -0.3
5,317,055 - +0.0
5,317,063 + -0.1
5,317,064 - -1.1
5,317,092 + +0.7
5,317,093 - -1.3
5,317,119 - +0.1
5,317,119 - -2.2
5,317,179 - -1.8
5,317,240 + -0.3
5,317,240 + -1.1
5,317,240 + +3.1
5,317,240 + -3.3
5,317,240 + -2.3
5,317,241 - +0.4
5,317,241 - +0.3
5,317,241 - +0.6
5,317,241 - +0.4
5,317,514 - Psyr_4451 0.53 -1.0
5,317,579 + Psyr_4451 0.66 -1.5
5,317,579 + Psyr_4451 0.66 -0.7
5,317,579 + Psyr_4451 0.66 -1.2
5,317,579 + Psyr_4451 0.66 -2.1
5,317,580 - Psyr_4451 0.67 -1.7
5,317,580 - Psyr_4451 0.67 +0.8
5,317,709 - -0.2
5,317,800 + -0.7
5,317,807 - -0.1
5,317,807 - +0.8
5,317,807 - +0.2
5,318,394 + -0.7
5,318,395 - -2.1
5,318,395 - -0.9
5,318,395 - +0.8
5,318,395 - -2.3
5,318,536 - Psyr_4453 0.16 -0.4
5,318,536 - Psyr_4453 0.16 +2.3
5,318,561 + Psyr_4453 0.20 +0.3
5,318,561 + Psyr_4453 0.20 +0.1
5,318,562 - Psyr_4453 0.20 +0.3
5,318,562 - Psyr_4453 0.20 -2.7
5,318,565 + Psyr_4453 0.20 -1.1
5,318,565 + Psyr_4453 0.20 +1.3
5,318,565 + Psyr_4453 0.20 -0.2
5,318,565 + Psyr_4453 0.20 -0.2
5,318,565 + Psyr_4453 0.20 +0.5
5,318,565 + Psyr_4453 0.20 -0.4
5,318,565 + Psyr_4453 0.20 -0.2
5,318,565 + Psyr_4453 0.20 -0.4
5,318,565 + Psyr_4453 0.20 -1.5
5,318,565 + Psyr_4453 0.20 +1.6
5,318,565 + Psyr_4453 0.20 +0.5
5,318,565 + Psyr_4453 0.20 +0.3
5,318,565 + Psyr_4453 0.20 -0.2
5,318,565 + Psyr_4453 0.20 -0.4
5,318,565 + Psyr_4453 0.20 -2.7
5,318,565 + Psyr_4453 0.20 +0.4
5,318,565 + Psyr_4453 0.20 -0.4
5,318,565 + Psyr_4453 0.20 +0.4
5,318,565 + Psyr_4453 0.20 -1.3
5,318,566 - Psyr_4453 0.21 -0.9
5,318,566 - Psyr_4453 0.21 -0.7
5,318,566 - Psyr_4453 0.21 -3.2
5,318,566 - Psyr_4453 0.21 +2.1
5,318,566 - Psyr_4453 0.21 -0.5
5,318,566 - Psyr_4453 0.21 +0.6
5,318,566 - Psyr_4453 0.21 +0.9
5,318,566 - Psyr_4453 0.21 -3.6
5,318,566 - Psyr_4453 0.21 +0.5
5,318,566 - Psyr_4453 0.21 +0.6
5,318,566 - Psyr_4453 0.21 +0.6
5,318,566 - Psyr_4453 0.21 -0.7
5,318,566 - Psyr_4453 0.21 +1.8
5,318,566 - Psyr_4453 0.21 +0.3
5,318,566 - Psyr_4453 0.21 +0.1
5,318,566 - Psyr_4453 0.21 -0.1
5,318,566 - Psyr_4453 0.21 +0.9
5,318,566 - Psyr_4453 0.21 -0.7
5,318,566 - Psyr_4453 0.21 +0.3
5,318,566 - Psyr_4453 0.21 +0.3

Or see this region's nucleotide sequence