Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4275 and Psyr_4276 are separated by 196 nucleotides Psyr_4276 and Psyr_4277 are separated by 190 nucleotides Psyr_4277 and Psyr_4278 are separated by 336 nucleotides Psyr_4278 and Psyr_4279 are separated by 129 nucleotides
Psyr_4275: Psyr_4275 - DNA replication and repair protein RadA, at 5,099,513 to 5,100,880
_4275
Psyr_4276: Psyr_4276 - Large-conductance mechanosensitive channel, at 5,101,077 to 5,101,523
_4276
Psyr_4277: Psyr_4277 - Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region, at 5,101,714 to 5,102,490
_4277
Psyr_4278: Psyr_4278 - regulatory protein, LuxR, at 5,102,827 to 5,103,060
_4278
Psyr_4279: Psyr_4279 - 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase, at 5,103,190 to 5,104,314
_4279
Position (kb) 5101
5102
5103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5100.858 kb on + strand at 5100.859 kb on - strand at 5100.859 kb on - strand at 5100.859 kb on - strand at 5100.977 kb on - strand at 5100.977 kb on - strand at 5101.022 kb on + strand at 5101.022 kb on + strand at 5101.022 kb on + strand at 5101.022 kb on + strand at 5101.023 kb on + strand at 5101.023 kb on - strand at 5101.023 kb on - strand at 5101.033 kb on + strand at 5101.054 kb on + strand at 5101.055 kb on - strand at 5101.061 kb on + strand at 5101.061 kb on + strand at 5101.062 kb on - strand at 5101.071 kb on + strand at 5101.071 kb on + strand at 5101.071 kb on + strand at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.142 kb on + strand, within Psyr_4276 at 5101.143 kb on - strand, within Psyr_4276 at 5101.145 kb on + strand, within Psyr_4276 at 5101.145 kb on + strand, within Psyr_4276 at 5101.146 kb on - strand, within Psyr_4276 at 5101.351 kb on + strand, within Psyr_4276 at 5101.351 kb on + strand, within Psyr_4276 at 5101.352 kb on - strand, within Psyr_4276 at 5101.515 kb on - strand at 5101.660 kb on + strand at 5101.660 kb on + strand at 5101.668 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.722 kb on - strand at 5101.722 kb on - strand at 5101.905 kb on + strand, within Psyr_4277 at 5101.905 kb on + strand, within Psyr_4277 at 5101.906 kb on - strand, within Psyr_4277 at 5101.906 kb on - strand, within Psyr_4277 at 5101.973 kb on + strand, within Psyr_4277 at 5101.986 kb on - strand, within Psyr_4277 at 5102.022 kb on - strand, within Psyr_4277 at 5102.051 kb on + strand, within Psyr_4277 at 5102.052 kb on - strand, within Psyr_4277 at 5102.052 kb on - strand, within Psyr_4277 at 5102.052 kb on - strand, within Psyr_4277 at 5102.052 kb on - strand, within Psyr_4277 at 5102.052 kb on - strand, within Psyr_4277 at 5102.052 kb on - strand, within Psyr_4277 at 5102.052 kb on - strand, within Psyr_4277 at 5102.318 kb on + strand, within Psyr_4277 at 5102.319 kb on - strand, within Psyr_4277 at 5102.319 kb on - strand, within Psyr_4277 at 5102.329 kb on + strand, within Psyr_4277 at 5102.330 kb on - strand, within Psyr_4277 at 5102.330 kb on - strand, within Psyr_4277 at 5102.330 kb on - strand, within Psyr_4277 at 5102.512 kb on + strand at 5102.601 kb on + strand at 5102.601 kb on + strand at 5102.606 kb on + strand at 5102.606 kb on + strand at 5102.606 kb on + strand at 5102.606 kb on + strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.607 kb on - strand at 5102.765 kb on + strand at 5102.765 kb on + strand at 5102.766 kb on - strand at 5102.766 kb on - strand at 5102.766 kb on - strand at 5102.775 kb on + strand at 5102.775 kb on + strand at 5102.776 kb on - strand at 5102.776 kb on - strand at 5102.785 kb on - strand at 5102.804 kb on + strand at 5102.804 kb on + strand at 5102.804 kb on + strand at 5102.804 kb on + strand at 5102.805 kb on - strand at 5102.805 kb on - strand at 5102.805 kb on - strand at 5102.805 kb on - strand at 5102.805 kb on - strand at 5102.805 kb on - strand at 5102.810 kb on + strand at 5102.810 kb on + strand at 5102.811 kb on - strand at 5102.811 kb on - strand at 5102.811 kb on - strand at 5102.824 kb on + strand at 5102.825 kb on - strand at 5102.825 kb on - strand at 5102.825 kb on - strand at 5102.825 kb on - strand at 5102.843 kb on + strand at 5103.032 kb on + strand, within Psyr_4278 at 5103.032 kb on + strand, within Psyr_4278 at 5103.032 kb on + strand, within Psyr_4278 at 5103.033 kb on - strand, within Psyr_4278 at 5103.108 kb on + strand at 5103.113 kb on - strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.160 kb on + strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.161 kb on - strand at 5103.286 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 5,100,858 + +1.5 5,100,859 - -0.8 5,100,859 - +0.5 5,100,859 - -1.7 5,100,977 - -2.6 5,100,977 - -0.2 5,101,022 + -1.4 5,101,022 + -0.6 5,101,022 + -0.0 5,101,022 + -1.1 5,101,023 + +1.2 5,101,023 - -0.8 5,101,023 - -0.8 5,101,033 + -0.5 5,101,054 + -0.7 5,101,055 - -0.6 5,101,061 + -0.3 5,101,061 + -1.7 5,101,062 - -0.8 5,101,071 + +0.0 5,101,071 + -0.3 5,101,071 + +2.5 5,101,123 + Psyr_4276 0.10 +0.2 5,101,123 + Psyr_4276 0.10 -0.2 5,101,123 + Psyr_4276 0.10 +0.1 5,101,123 + Psyr_4276 0.10 +0.4 5,101,123 + Psyr_4276 0.10 +1.4 5,101,123 + Psyr_4276 0.10 -0.8 5,101,123 + Psyr_4276 0.10 -1.1 5,101,123 + Psyr_4276 0.10 -0.8 5,101,123 + Psyr_4276 0.10 +0.3 5,101,123 + Psyr_4276 0.10 +1.0 5,101,123 + Psyr_4276 0.10 +0.5 5,101,123 + Psyr_4276 0.10 -0.4 5,101,124 - Psyr_4276 0.11 +1.9 5,101,124 - Psyr_4276 0.11 +0.6 5,101,124 - Psyr_4276 0.11 -0.3 5,101,124 - Psyr_4276 0.11 -1.2 5,101,124 - Psyr_4276 0.11 -0.8 5,101,124 - Psyr_4276 0.11 -1.8 5,101,124 - Psyr_4276 0.11 -0.4 5,101,124 - Psyr_4276 0.11 -0.5 5,101,124 - Psyr_4276 0.11 +0.6 5,101,124 - Psyr_4276 0.11 -1.4 5,101,124 - Psyr_4276 0.11 -0.6 5,101,124 - Psyr_4276 0.11 +0.8 5,101,142 + Psyr_4276 0.15 +1.4 5,101,143 - Psyr_4276 0.15 -1.3 5,101,145 + Psyr_4276 0.15 +1.3 5,101,145 + Psyr_4276 0.15 -0.8 5,101,146 - Psyr_4276 0.15 +0.5 5,101,351 + Psyr_4276 0.61 +0.6 5,101,351 + Psyr_4276 0.61 -0.1 5,101,352 - Psyr_4276 0.62 +2.2 5,101,515 - -0.5 5,101,660 + -0.8 5,101,660 + +1.8 5,101,668 + +0.2 5,101,721 + +0.8 5,101,721 + -2.6 5,101,721 + -1.1 5,101,721 + -1.2 5,101,721 + -0.4 5,101,721 + -1.8 5,101,721 + -1.8 5,101,721 + -1.4 5,101,721 + -0.8 5,101,721 + -1.1 5,101,721 + -3.5 5,101,722 - -0.6 5,101,722 - -1.8 5,101,905 + Psyr_4277 0.25 -0.6 5,101,905 + Psyr_4277 0.25 -2.1 5,101,906 - Psyr_4277 0.25 -1.0 5,101,906 - Psyr_4277 0.25 +0.8 5,101,973 + Psyr_4277 0.33 +0.2 5,101,986 - Psyr_4277 0.35 -3.1 5,102,022 - Psyr_4277 0.40 -1.4 5,102,051 + Psyr_4277 0.43 -3.6 5,102,052 - Psyr_4277 0.44 -1.6 5,102,052 - Psyr_4277 0.44 -1.2 5,102,052 - Psyr_4277 0.44 -1.0 5,102,052 - Psyr_4277 0.44 -1.4 5,102,052 - Psyr_4277 0.44 -1.5 5,102,052 - Psyr_4277 0.44 -1.6 5,102,052 - Psyr_4277 0.44 -1.4 5,102,318 + Psyr_4277 0.78 -1.4 5,102,319 - Psyr_4277 0.78 -3.3 5,102,319 - Psyr_4277 0.78 -2.3 5,102,329 + Psyr_4277 0.79 -1.1 5,102,330 - Psyr_4277 0.79 +0.2 5,102,330 - Psyr_4277 0.79 -0.8 5,102,330 - Psyr_4277 0.79 -1.4 5,102,512 + -0.9 5,102,601 + -0.1 5,102,601 + -0.4 5,102,606 + +0.2 5,102,606 + +0.6 5,102,606 + -0.4 5,102,606 + +0.3 5,102,607 - -0.5 5,102,607 - -0.8 5,102,607 - -0.3 5,102,607 - -1.8 5,102,607 - -2.1 5,102,607 - +1.2 5,102,607 - +1.7 5,102,765 + -1.8 5,102,765 + +0.1 5,102,766 - +0.2 5,102,766 - -0.9 5,102,766 - +0.1 5,102,775 + -2.0 5,102,775 + -0.6 5,102,776 - -1.2 5,102,776 - -0.2 5,102,785 - -0.6 5,102,804 + +0.4 5,102,804 + +0.6 5,102,804 + -0.7 5,102,804 + -2.0 5,102,805 - +0.3 5,102,805 - -1.9 5,102,805 - +0.0 5,102,805 - +0.4 5,102,805 - -1.8 5,102,805 - +0.0 5,102,810 + -1.1 5,102,810 + +0.2 5,102,811 - +0.9 5,102,811 - -0.2 5,102,811 - -1.8 5,102,824 + +0.8 5,102,825 - +0.7 5,102,825 - +0.4 5,102,825 - +1.7 5,102,825 - -0.8 5,102,843 + +0.3 5,103,032 + Psyr_4278 0.88 -1.2 5,103,032 + Psyr_4278 0.88 -0.2 5,103,032 + Psyr_4278 0.88 +0.4 5,103,033 - Psyr_4278 0.88 -1.6 5,103,108 + -0.3 5,103,113 - +0.0 5,103,160 + +0.2 5,103,160 + -0.6 5,103,160 + -2.8 5,103,160 + +0.6 5,103,160 + +0.6 5,103,160 + +0.2 5,103,161 - +1.6 5,103,161 - -0.2 5,103,161 - -0.5 5,103,161 - -1.7 5,103,161 - +0.6 5,103,286 + +1.3
Or see this region's nucleotide sequence