Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2090

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2089 and Psyr_2090 are separated by 221 nucleotidesPsyr_2090 and Psyr_2091 are separated by 192 nucleotides Psyr_2089: Psyr_2089 - Protein of unknown function DUF299, at 2,436,588 to 2,437,406 _2089 Psyr_2090: Psyr_2090 - phosphoenolpyruvate synthase, at 2,437,628 to 2,440,003 _2090 Psyr_2091: Psyr_2091 - esterase/lipase/thioesterase family protein, at 2,440,196 to 2,441,185 _2091 Position (kb) 2437 2438 2439 2440 2441Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2436.881 kb on - strand, within Psyr_2089at 2436.916 kb on + strand, within Psyr_2089at 2436.916 kb on + strand, within Psyr_2089at 2436.916 kb on + strand, within Psyr_2089at 2436.916 kb on + strand, within Psyr_2089at 2436.916 kb on + strand, within Psyr_2089at 2436.916 kb on + strand, within Psyr_2089at 2436.917 kb on - strand, within Psyr_2089at 2436.917 kb on - strand, within Psyr_2089at 2436.917 kb on - strand, within Psyr_2089at 2436.917 kb on - strand, within Psyr_2089at 2436.917 kb on - strand, within Psyr_2089at 2436.917 kb on - strand, within Psyr_2089at 2436.979 kb on + strand, within Psyr_2089at 2436.980 kb on - strand, within Psyr_2089at 2436.980 kb on - strand, within Psyr_2089at 2436.982 kb on + strand, within Psyr_2089at 2436.983 kb on - strand, within Psyr_2089at 2437.045 kb on + strand, within Psyr_2089at 2437.046 kb on - strand, within Psyr_2089at 2437.046 kb on - strand, within Psyr_2089at 2437.055 kb on + strand, within Psyr_2089at 2437.055 kb on + strand, within Psyr_2089at 2437.055 kb on + strand, within Psyr_2089at 2437.087 kb on + strand, within Psyr_2089at 2437.103 kb on + strand, within Psyr_2089at 2437.103 kb on + strand, within Psyr_2089at 2437.103 kb on + strand, within Psyr_2089at 2437.103 kb on + strand, within Psyr_2089at 2437.103 kb on + strand, within Psyr_2089at 2437.104 kb on - strand, within Psyr_2089at 2437.104 kb on - strand, within Psyr_2089at 2437.104 kb on - strand, within Psyr_2089at 2437.104 kb on - strand, within Psyr_2089at 2437.257 kb on + strand, within Psyr_2089at 2437.291 kb on + strand, within Psyr_2089at 2437.291 kb on + strand, within Psyr_2089at 2437.292 kb on - strand, within Psyr_2089at 2437.292 kb on - strand, within Psyr_2089at 2437.316 kb on + strand, within Psyr_2089at 2437.316 kb on + strand, within Psyr_2089at 2437.449 kb on + strandat 2437.449 kb on + strandat 2437.449 kb on + strandat 2437.449 kb on + strandat 2437.450 kb on - strandat 2437.450 kb on - strandat 2437.450 kb on - strandat 2437.450 kb on - strandat 2437.536 kb on - strandat 2437.536 kb on - strandat 2437.613 kb on - strandat 2437.633 kb on - strandat 2437.637 kb on + strandat 2437.637 kb on + strandat 2437.637 kb on + strandat 2437.637 kb on + strandat 2437.637 kb on + strandat 2437.637 kb on + strandat 2437.638 kb on - strandat 2437.638 kb on - strandat 2437.638 kb on - strandat 2437.638 kb on - strandat 2437.638 kb on - strandat 2437.641 kb on + strandat 2437.641 kb on + strandat 2437.641 kb on + strandat 2437.641 kb on + strandat 2437.641 kb on + strandat 2437.642 kb on - strandat 2437.642 kb on - strandat 2437.642 kb on - strandat 2437.642 kb on - strandat 2437.642 kb on - strandat 2437.642 kb on - strandat 2437.674 kb on + strandat 2437.674 kb on + strandat 2437.674 kb on + strandat 2437.674 kb on + strandat 2437.674 kb on + strandat 2437.675 kb on - strandat 2437.675 kb on - strandat 2437.940 kb on - strand, within Psyr_2090at 2438.337 kb on - strand, within Psyr_2090at 2438.337 kb on - strand, within Psyr_2090at 2438.549 kb on + strand, within Psyr_2090at 2438.549 kb on + strand, within Psyr_2090at 2438.549 kb on + strand, within Psyr_2090at 2438.550 kb on - strand, within Psyr_2090at 2438.603 kb on + strand, within Psyr_2090at 2438.603 kb on + strand, within Psyr_2090at 2438.603 kb on + strand, within Psyr_2090at 2438.603 kb on + strand, within Psyr_2090at 2438.603 kb on + strand, within Psyr_2090at 2438.603 kb on + strand, within Psyr_2090at 2438.603 kb on + strand, within Psyr_2090at 2438.604 kb on - strand, within Psyr_2090at 2438.604 kb on - strand, within Psyr_2090at 2438.604 kb on - strand, within Psyr_2090at 2438.604 kb on - strand, within Psyr_2090at 2438.604 kb on - strand, within Psyr_2090at 2438.604 kb on - strand, within Psyr_2090at 2438.604 kb on - strand, within Psyr_2090at 2438.604 kb on - strand, within Psyr_2090at 2438.667 kb on - strand, within Psyr_2090at 2438.743 kb on + strand, within Psyr_2090at 2438.744 kb on - strand, within Psyr_2090at 2438.873 kb on - strand, within Psyr_2090at 2438.944 kb on + strand, within Psyr_2090at 2438.944 kb on + strand, within Psyr_2090at 2438.999 kb on + strand, within Psyr_2090at 2438.999 kb on + strand, within Psyr_2090at 2439.000 kb on - strand, within Psyr_2090at 2439.000 kb on - strand, within Psyr_2090at 2439.001 kb on + strand, within Psyr_2090at 2439.001 kb on + strand, within Psyr_2090at 2439.001 kb on + strand, within Psyr_2090at 2439.001 kb on + strand, within Psyr_2090at 2439.002 kb on - strand, within Psyr_2090at 2439.002 kb on - strand, within Psyr_2090at 2439.206 kb on + strand, within Psyr_2090at 2439.281 kb on + strand, within Psyr_2090at 2439.378 kb on - strand, within Psyr_2090at 2439.405 kb on - strand, within Psyr_2090at 2439.405 kb on - strand, within Psyr_2090at 2439.456 kb on - strand, within Psyr_2090at 2439.456 kb on - strand, within Psyr_2090at 2439.456 kb on - strand, within Psyr_2090at 2439.458 kb on - strand, within Psyr_2090at 2439.699 kb on - strand, within Psyr_2090at 2439.857 kb on + strandat 2439.857 kb on + strandat 2439.858 kb on - strandat 2439.957 kb on + strandat 2440.186 kb on - strandat 2440.195 kb on + strandat 2440.195 kb on + strandat 2440.196 kb on - strandat 2440.196 kb on - strandat 2440.196 kb on - strandat 2440.271 kb on + strandat 2440.439 kb on + strand, within Psyr_2091at 2440.514 kb on + strand, within Psyr_2091at 2440.538 kb on + strand, within Psyr_2091at 2440.596 kb on + strand, within Psyr_2091at 2440.658 kb on + strand, within Psyr_2091at 2440.658 kb on + strand, within Psyr_2091at 2440.672 kb on + strand, within Psyr_2091at 2440.718 kb on + strand, within Psyr_2091at 2440.718 kb on + strand, within Psyr_2091at 2440.719 kb on - strand, within Psyr_2091at 2440.719 kb on - strand, within Psyr_2091at 2440.719 kb on - strand, within Psyr_2091at 2440.719 kb on - strand, within Psyr_2091at 2440.784 kb on - strand, within Psyr_2091at 2440.784 kb on - strand, within Psyr_2091

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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2,436,881 - Psyr_2089 0.36 +1.3
2,436,916 + Psyr_2089 0.40 -1.9
2,436,916 + Psyr_2089 0.40 +1.2
2,436,916 + Psyr_2089 0.40 +0.4
2,436,916 + Psyr_2089 0.40 -0.7
2,436,916 + Psyr_2089 0.40 -0.3
2,436,916 + Psyr_2089 0.40 +0.0
2,436,917 - Psyr_2089 0.40 -0.7
2,436,917 - Psyr_2089 0.40 -1.3
2,436,917 - Psyr_2089 0.40 +0.5
2,436,917 - Psyr_2089 0.40 -1.0
2,436,917 - Psyr_2089 0.40 +1.1
2,436,917 - Psyr_2089 0.40 -0.3
2,436,979 + Psyr_2089 0.48 -0.9
2,436,980 - Psyr_2089 0.48 +3.0
2,436,980 - Psyr_2089 0.48 +1.5
2,436,982 + Psyr_2089 0.48 -1.3
2,436,983 - Psyr_2089 0.48 +1.3
2,437,045 + Psyr_2089 0.56 -0.3
2,437,046 - Psyr_2089 0.56 -1.3
2,437,046 - Psyr_2089 0.56 +0.3
2,437,055 + Psyr_2089 0.57 -0.1
2,437,055 + Psyr_2089 0.57 +2.3
2,437,055 + Psyr_2089 0.57 -1.6
2,437,087 + Psyr_2089 0.61 -0.5
2,437,103 + Psyr_2089 0.63 +0.7
2,437,103 + Psyr_2089 0.63 -0.2
2,437,103 + Psyr_2089 0.63 +0.0
2,437,103 + Psyr_2089 0.63 +0.0
2,437,103 + Psyr_2089 0.63 -1.9
2,437,104 - Psyr_2089 0.63 -0.4
2,437,104 - Psyr_2089 0.63 -1.9
2,437,104 - Psyr_2089 0.63 +0.2
2,437,104 - Psyr_2089 0.63 +0.6
2,437,257 + Psyr_2089 0.82 -2.3
2,437,291 + Psyr_2089 0.86 +1.0
2,437,291 + Psyr_2089 0.86 +0.3
2,437,292 - Psyr_2089 0.86 -0.6
2,437,292 - Psyr_2089 0.86 -1.3
2,437,316 + Psyr_2089 0.89 +1.4
2,437,316 + Psyr_2089 0.89 +0.1
2,437,449 + -0.3
2,437,449 + -1.9
2,437,449 + -1.1
2,437,449 + -0.2
2,437,450 - -2.3
2,437,450 - -3.5
2,437,450 - -0.7
2,437,450 - +1.7
2,437,536 - -2.0
2,437,536 - -0.3
2,437,613 - -2.0
2,437,633 - -1.5
2,437,637 + -1.9
2,437,637 + -0.3
2,437,637 + +1.3
2,437,637 + -0.3
2,437,637 + -1.9
2,437,637 + -0.9
2,437,638 - -0.0
2,437,638 - -2.6
2,437,638 - -3.2
2,437,638 - -1.1
2,437,638 - -1.3
2,437,641 + -4.0
2,437,641 + -1.9
2,437,641 + -2.9
2,437,641 + -2.6
2,437,641 + -0.3
2,437,642 - -1.7
2,437,642 - -1.9
2,437,642 - -2.3
2,437,642 - -2.3
2,437,642 - -0.9
2,437,642 - -2.9
2,437,674 + -1.3
2,437,674 + -3.0
2,437,674 + +1.3
2,437,674 + -0.3
2,437,674 + -1.6
2,437,675 - -1.3
2,437,675 - -1.3
2,437,940 - Psyr_2090 0.13 -3.7
2,438,337 - Psyr_2090 0.30 -1.3
2,438,337 - Psyr_2090 0.30 -2.3
2,438,549 + Psyr_2090 0.39 -1.0
2,438,549 + Psyr_2090 0.39 -1.6
2,438,549 + Psyr_2090 0.39 -2.6
2,438,550 - Psyr_2090 0.39 -3.1
2,438,603 + Psyr_2090 0.41 -2.9
2,438,603 + Psyr_2090 0.41 -1.3
2,438,603 + Psyr_2090 0.41 -2.3
2,438,603 + Psyr_2090 0.41 -1.3
2,438,603 + Psyr_2090 0.41 +0.7
2,438,603 + Psyr_2090 0.41 -2.9
2,438,603 + Psyr_2090 0.41 -1.9
2,438,604 - Psyr_2090 0.41 -2.3
2,438,604 - Psyr_2090 0.41 -1.5
2,438,604 - Psyr_2090 0.41 +0.3
2,438,604 - Psyr_2090 0.41 -0.6
2,438,604 - Psyr_2090 0.41 -0.6
2,438,604 - Psyr_2090 0.41 -2.7
2,438,604 - Psyr_2090 0.41 -4.4
2,438,604 - Psyr_2090 0.41 -3.0
2,438,667 - Psyr_2090 0.44 -2.9
2,438,743 + Psyr_2090 0.47 -0.3
2,438,744 - Psyr_2090 0.47 -1.0
2,438,873 - Psyr_2090 0.52 -0.9
2,438,944 + Psyr_2090 0.55 -1.3
2,438,944 + Psyr_2090 0.55 +0.1
2,438,999 + Psyr_2090 0.58 -2.6
2,438,999 + Psyr_2090 0.58 -3.1
2,439,000 - Psyr_2090 0.58 -0.9
2,439,000 - Psyr_2090 0.58 -0.9
2,439,001 + Psyr_2090 0.58 -2.0
2,439,001 + Psyr_2090 0.58 -2.9
2,439,001 + Psyr_2090 0.58 +0.4
2,439,001 + Psyr_2090 0.58 -3.5
2,439,002 - Psyr_2090 0.58 -4.0
2,439,002 - Psyr_2090 0.58 -1.9
2,439,206 + Psyr_2090 0.66 -3.1
2,439,281 + Psyr_2090 0.70 -1.3
2,439,378 - Psyr_2090 0.74 -1.9
2,439,405 - Psyr_2090 0.75 -2.6
2,439,405 - Psyr_2090 0.75 -1.9
2,439,456 - Psyr_2090 0.77 -2.3
2,439,456 - Psyr_2090 0.77 -0.9
2,439,456 - Psyr_2090 0.77 -1.5
2,439,458 - Psyr_2090 0.77 -2.5
2,439,699 - Psyr_2090 0.87 +0.1
2,439,857 + -0.3
2,439,857 + -0.8
2,439,858 - -2.6
2,439,957 + -1.3
2,440,186 - -2.3
2,440,195 + +1.1
2,440,195 + +0.6
2,440,196 - -0.1
2,440,196 - -0.1
2,440,196 - +0.4
2,440,271 + +0.7
2,440,439 + Psyr_2091 0.25 -1.3
2,440,514 + Psyr_2091 0.32 -0.1
2,440,538 + Psyr_2091 0.35 -0.3
2,440,596 + Psyr_2091 0.40 -0.7
2,440,658 + Psyr_2091 0.47 -0.7
2,440,658 + Psyr_2091 0.47 -1.9
2,440,672 + Psyr_2091 0.48 +2.5
2,440,718 + Psyr_2091 0.53 -2.3
2,440,718 + Psyr_2091 0.53 +1.0
2,440,719 - Psyr_2091 0.53 -0.4
2,440,719 - Psyr_2091 0.53 -1.1
2,440,719 - Psyr_2091 0.53 -1.0
2,440,719 - Psyr_2091 0.53 -0.0
2,440,784 - Psyr_2091 0.59 +0.7
2,440,784 - Psyr_2091 0.59 +0.3

Or see this region's nucleotide sequence