Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2089 and Psyr_2090 are separated by 221 nucleotides Psyr_2090 and Psyr_2091 are separated by 192 nucleotides
Psyr_2089: Psyr_2089 - Protein of unknown function DUF299, at 2,436,588 to 2,437,406
_2089
Psyr_2090: Psyr_2090 - phosphoenolpyruvate synthase, at 2,437,628 to 2,440,003
_2090
Psyr_2091: Psyr_2091 - esterase/lipase/thioesterase family protein, at 2,440,196 to 2,441,185
_2091
Position (kb)
2437
2438
2439
2440
2441 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2436.881 kb on - strand, within Psyr_2089 at 2436.916 kb on + strand, within Psyr_2089 at 2436.916 kb on + strand, within Psyr_2089 at 2436.916 kb on + strand, within Psyr_2089 at 2436.916 kb on + strand, within Psyr_2089 at 2436.916 kb on + strand, within Psyr_2089 at 2436.916 kb on + strand, within Psyr_2089 at 2436.917 kb on - strand, within Psyr_2089 at 2436.917 kb on - strand, within Psyr_2089 at 2436.917 kb on - strand, within Psyr_2089 at 2436.917 kb on - strand, within Psyr_2089 at 2436.917 kb on - strand, within Psyr_2089 at 2436.917 kb on - strand, within Psyr_2089 at 2436.979 kb on + strand, within Psyr_2089 at 2436.980 kb on - strand, within Psyr_2089 at 2436.980 kb on - strand, within Psyr_2089 at 2436.982 kb on + strand, within Psyr_2089 at 2436.983 kb on - strand, within Psyr_2089 at 2437.045 kb on + strand, within Psyr_2089 at 2437.046 kb on - strand, within Psyr_2089 at 2437.046 kb on - strand, within Psyr_2089 at 2437.055 kb on + strand, within Psyr_2089 at 2437.055 kb on + strand, within Psyr_2089 at 2437.055 kb on + strand, within Psyr_2089 at 2437.087 kb on + strand, within Psyr_2089 at 2437.103 kb on + strand, within Psyr_2089 at 2437.103 kb on + strand, within Psyr_2089 at 2437.103 kb on + strand, within Psyr_2089 at 2437.103 kb on + strand, within Psyr_2089 at 2437.103 kb on + strand, within Psyr_2089 at 2437.104 kb on - strand, within Psyr_2089 at 2437.104 kb on - strand, within Psyr_2089 at 2437.104 kb on - strand, within Psyr_2089 at 2437.104 kb on - strand, within Psyr_2089 at 2437.257 kb on + strand, within Psyr_2089 at 2437.291 kb on + strand, within Psyr_2089 at 2437.291 kb on + strand, within Psyr_2089 at 2437.292 kb on - strand, within Psyr_2089 at 2437.292 kb on - strand, within Psyr_2089 at 2437.316 kb on + strand, within Psyr_2089 at 2437.316 kb on + strand, within Psyr_2089 at 2437.449 kb on + strand at 2437.449 kb on + strand at 2437.449 kb on + strand at 2437.449 kb on + strand at 2437.450 kb on - strand at 2437.450 kb on - strand at 2437.450 kb on - strand at 2437.450 kb on - strand at 2437.536 kb on - strand at 2437.536 kb on - strand at 2437.613 kb on - strand at 2437.633 kb on - strand at 2437.637 kb on + strand at 2437.637 kb on + strand at 2437.637 kb on + strand at 2437.637 kb on + strand at 2437.637 kb on + strand at 2437.637 kb on + strand at 2437.638 kb on - strand at 2437.638 kb on - strand at 2437.638 kb on - strand at 2437.638 kb on - strand at 2437.638 kb on - strand at 2437.641 kb on + strand at 2437.641 kb on + strand at 2437.641 kb on + strand at 2437.641 kb on + strand at 2437.641 kb on + strand at 2437.642 kb on - strand at 2437.642 kb on - strand at 2437.642 kb on - strand at 2437.642 kb on - strand at 2437.642 kb on - strand at 2437.642 kb on - strand at 2437.674 kb on + strand at 2437.674 kb on + strand at 2437.674 kb on + strand at 2437.674 kb on + strand at 2437.674 kb on + strand at 2437.675 kb on - strand at 2437.675 kb on - strand at 2437.940 kb on - strand, within Psyr_2090 at 2438.337 kb on - strand, within Psyr_2090 at 2438.337 kb on - strand, within Psyr_2090 at 2438.549 kb on + strand, within Psyr_2090 at 2438.549 kb on + strand, within Psyr_2090 at 2438.549 kb on + strand, within Psyr_2090 at 2438.550 kb on - strand, within Psyr_2090 at 2438.603 kb on + strand, within Psyr_2090 at 2438.603 kb on + strand, within Psyr_2090 at 2438.603 kb on + strand, within Psyr_2090 at 2438.603 kb on + strand, within Psyr_2090 at 2438.603 kb on + strand, within Psyr_2090 at 2438.603 kb on + strand, within Psyr_2090 at 2438.603 kb on + strand, within Psyr_2090 at 2438.604 kb on - strand, within Psyr_2090 at 2438.604 kb on - strand, within Psyr_2090 at 2438.604 kb on - strand, within Psyr_2090 at 2438.604 kb on - strand, within Psyr_2090 at 2438.604 kb on - strand, within Psyr_2090 at 2438.604 kb on - strand, within Psyr_2090 at 2438.604 kb on - strand, within Psyr_2090 at 2438.604 kb on - strand, within Psyr_2090 at 2438.667 kb on - strand, within Psyr_2090 at 2438.743 kb on + strand, within Psyr_2090 at 2438.744 kb on - strand, within Psyr_2090 at 2438.873 kb on - strand, within Psyr_2090 at 2438.944 kb on + strand, within Psyr_2090 at 2438.944 kb on + strand, within Psyr_2090 at 2438.999 kb on + strand, within Psyr_2090 at 2438.999 kb on + strand, within Psyr_2090 at 2439.000 kb on - strand, within Psyr_2090 at 2439.000 kb on - strand, within Psyr_2090 at 2439.001 kb on + strand, within Psyr_2090 at 2439.001 kb on + strand, within Psyr_2090 at 2439.001 kb on + strand, within Psyr_2090 at 2439.001 kb on + strand, within Psyr_2090 at 2439.002 kb on - strand, within Psyr_2090 at 2439.002 kb on - strand, within Psyr_2090 at 2439.206 kb on + strand, within Psyr_2090 at 2439.281 kb on + strand, within Psyr_2090 at 2439.378 kb on - strand, within Psyr_2090 at 2439.405 kb on - strand, within Psyr_2090 at 2439.405 kb on - strand, within Psyr_2090 at 2439.456 kb on - strand, within Psyr_2090 at 2439.456 kb on - strand, within Psyr_2090 at 2439.456 kb on - strand, within Psyr_2090 at 2439.458 kb on - strand, within Psyr_2090 at 2439.699 kb on - strand, within Psyr_2090 at 2439.857 kb on + strand at 2439.857 kb on + strand at 2439.858 kb on - strand at 2439.957 kb on + strand at 2440.186 kb on - strand at 2440.195 kb on + strand at 2440.195 kb on + strand at 2440.196 kb on - strand at 2440.196 kb on - strand at 2440.196 kb on - strand at 2440.271 kb on + strand at 2440.439 kb on + strand, within Psyr_2091 at 2440.514 kb on + strand, within Psyr_2091 at 2440.538 kb on + strand, within Psyr_2091 at 2440.596 kb on + strand, within Psyr_2091 at 2440.658 kb on + strand, within Psyr_2091 at 2440.658 kb on + strand, within Psyr_2091 at 2440.672 kb on + strand, within Psyr_2091 at 2440.718 kb on + strand, within Psyr_2091 at 2440.718 kb on + strand, within Psyr_2091 at 2440.719 kb on - strand, within Psyr_2091 at 2440.719 kb on - strand, within Psyr_2091 at 2440.719 kb on - strand, within Psyr_2091 at 2440.719 kb on - strand, within Psyr_2091 at 2440.784 kb on - strand, within Psyr_2091 at 2440.784 kb on - strand, within Psyr_2091
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 2,436,881 - Psyr_2089 0.36 +1.3 2,436,916 + Psyr_2089 0.40 -1.9 2,436,916 + Psyr_2089 0.40 +1.2 2,436,916 + Psyr_2089 0.40 +0.4 2,436,916 + Psyr_2089 0.40 -0.7 2,436,916 + Psyr_2089 0.40 -0.3 2,436,916 + Psyr_2089 0.40 +0.0 2,436,917 - Psyr_2089 0.40 -0.7 2,436,917 - Psyr_2089 0.40 -1.3 2,436,917 - Psyr_2089 0.40 +0.5 2,436,917 - Psyr_2089 0.40 -1.0 2,436,917 - Psyr_2089 0.40 +1.1 2,436,917 - Psyr_2089 0.40 -0.3 2,436,979 + Psyr_2089 0.48 -0.9 2,436,980 - Psyr_2089 0.48 +3.0 2,436,980 - Psyr_2089 0.48 +1.5 2,436,982 + Psyr_2089 0.48 -1.3 2,436,983 - Psyr_2089 0.48 +1.3 2,437,045 + Psyr_2089 0.56 -0.3 2,437,046 - Psyr_2089 0.56 -1.3 2,437,046 - Psyr_2089 0.56 +0.3 2,437,055 + Psyr_2089 0.57 -0.1 2,437,055 + Psyr_2089 0.57 +2.3 2,437,055 + Psyr_2089 0.57 -1.6 2,437,087 + Psyr_2089 0.61 -0.5 2,437,103 + Psyr_2089 0.63 +0.7 2,437,103 + Psyr_2089 0.63 -0.2 2,437,103 + Psyr_2089 0.63 +0.0 2,437,103 + Psyr_2089 0.63 +0.0 2,437,103 + Psyr_2089 0.63 -1.9 2,437,104 - Psyr_2089 0.63 -0.4 2,437,104 - Psyr_2089 0.63 -1.9 2,437,104 - Psyr_2089 0.63 +0.2 2,437,104 - Psyr_2089 0.63 +0.6 2,437,257 + Psyr_2089 0.82 -2.3 2,437,291 + Psyr_2089 0.86 +1.0 2,437,291 + Psyr_2089 0.86 +0.3 2,437,292 - Psyr_2089 0.86 -0.6 2,437,292 - Psyr_2089 0.86 -1.3 2,437,316 + Psyr_2089 0.89 +1.4 2,437,316 + Psyr_2089 0.89 +0.1 2,437,449 + -0.3 2,437,449 + -1.9 2,437,449 + -1.1 2,437,449 + -0.2 2,437,450 - -2.3 2,437,450 - -3.5 2,437,450 - -0.7 2,437,450 - +1.7 2,437,536 - -2.0 2,437,536 - -0.3 2,437,613 - -2.0 2,437,633 - -1.5 2,437,637 + -1.9 2,437,637 + -0.3 2,437,637 + +1.3 2,437,637 + -0.3 2,437,637 + -1.9 2,437,637 + -0.9 2,437,638 - -0.0 2,437,638 - -2.6 2,437,638 - -3.2 2,437,638 - -1.1 2,437,638 - -1.3 2,437,641 + -4.0 2,437,641 + -1.9 2,437,641 + -2.9 2,437,641 + -2.6 2,437,641 + -0.3 2,437,642 - -1.7 2,437,642 - -1.9 2,437,642 - -2.3 2,437,642 - -2.3 2,437,642 - -0.9 2,437,642 - -2.9 2,437,674 + -1.3 2,437,674 + -3.0 2,437,674 + +1.3 2,437,674 + -0.3 2,437,674 + -1.6 2,437,675 - -1.3 2,437,675 - -1.3 2,437,940 - Psyr_2090 0.13 -3.7 2,438,337 - Psyr_2090 0.30 -1.3 2,438,337 - Psyr_2090 0.30 -2.3 2,438,549 + Psyr_2090 0.39 -1.0 2,438,549 + Psyr_2090 0.39 -1.6 2,438,549 + Psyr_2090 0.39 -2.6 2,438,550 - Psyr_2090 0.39 -3.1 2,438,603 + Psyr_2090 0.41 -2.9 2,438,603 + Psyr_2090 0.41 -1.3 2,438,603 + Psyr_2090 0.41 -2.3 2,438,603 + Psyr_2090 0.41 -1.3 2,438,603 + Psyr_2090 0.41 +0.7 2,438,603 + Psyr_2090 0.41 -2.9 2,438,603 + Psyr_2090 0.41 -1.9 2,438,604 - Psyr_2090 0.41 -2.3 2,438,604 - Psyr_2090 0.41 -1.5 2,438,604 - Psyr_2090 0.41 +0.3 2,438,604 - Psyr_2090 0.41 -0.6 2,438,604 - Psyr_2090 0.41 -0.6 2,438,604 - Psyr_2090 0.41 -2.7 2,438,604 - Psyr_2090 0.41 -4.4 2,438,604 - Psyr_2090 0.41 -3.0 2,438,667 - Psyr_2090 0.44 -2.9 2,438,743 + Psyr_2090 0.47 -0.3 2,438,744 - Psyr_2090 0.47 -1.0 2,438,873 - Psyr_2090 0.52 -0.9 2,438,944 + Psyr_2090 0.55 -1.3 2,438,944 + Psyr_2090 0.55 +0.1 2,438,999 + Psyr_2090 0.58 -2.6 2,438,999 + Psyr_2090 0.58 -3.1 2,439,000 - Psyr_2090 0.58 -0.9 2,439,000 - Psyr_2090 0.58 -0.9 2,439,001 + Psyr_2090 0.58 -2.0 2,439,001 + Psyr_2090 0.58 -2.9 2,439,001 + Psyr_2090 0.58 +0.4 2,439,001 + Psyr_2090 0.58 -3.5 2,439,002 - Psyr_2090 0.58 -4.0 2,439,002 - Psyr_2090 0.58 -1.9 2,439,206 + Psyr_2090 0.66 -3.1 2,439,281 + Psyr_2090 0.70 -1.3 2,439,378 - Psyr_2090 0.74 -1.9 2,439,405 - Psyr_2090 0.75 -2.6 2,439,405 - Psyr_2090 0.75 -1.9 2,439,456 - Psyr_2090 0.77 -2.3 2,439,456 - Psyr_2090 0.77 -0.9 2,439,456 - Psyr_2090 0.77 -1.5 2,439,458 - Psyr_2090 0.77 -2.5 2,439,699 - Psyr_2090 0.87 +0.1 2,439,857 + -0.3 2,439,857 + -0.8 2,439,858 - -2.6 2,439,957 + -1.3 2,440,186 - -2.3 2,440,195 + +1.1 2,440,195 + +0.6 2,440,196 - -0.1 2,440,196 - -0.1 2,440,196 - +0.4 2,440,271 + +0.7 2,440,439 + Psyr_2091 0.25 -1.3 2,440,514 + Psyr_2091 0.32 -0.1 2,440,538 + Psyr_2091 0.35 -0.3 2,440,596 + Psyr_2091 0.40 -0.7 2,440,658 + Psyr_2091 0.47 -0.7 2,440,658 + Psyr_2091 0.47 -1.9 2,440,672 + Psyr_2091 0.48 +2.5 2,440,718 + Psyr_2091 0.53 -2.3 2,440,718 + Psyr_2091 0.53 +1.0 2,440,719 - Psyr_2091 0.53 -0.4 2,440,719 - Psyr_2091 0.53 -1.1 2,440,719 - Psyr_2091 0.53 -1.0 2,440,719 - Psyr_2091 0.53 -0.0 2,440,784 - Psyr_2091 0.59 +0.7 2,440,784 - Psyr_2091 0.59 +0.3
Or see this region's nucleotide sequence