Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0543 and Psyr_0544 are separated by 426 nucleotides Psyr_0544 and Psyr_0545 are separated by 431 nucleotides
Psyr_0543: Psyr_0543 - Type I secretion outer membrane protein, TolC, at 613,307 to 614,746
_0543
Psyr_0544: Psyr_0544 - hydroxymethylpyrimidine synthase, at 615,173 to 617,062
_0544
Psyr_0545: Psyr_0545 - Permease for cytosine/purines, uracil, thiamine, allantoin, at 617,494 to 618,783
_0545
Position (kb) 615
616
617
618 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 614.173 kb on - strand, within Psyr_0543 at 614.173 kb on - strand, within Psyr_0543 at 614.306 kb on + strand, within Psyr_0543 at 614.306 kb on + strand, within Psyr_0543 at 614.316 kb on + strand, within Psyr_0543 at 614.316 kb on + strand, within Psyr_0543 at 614.316 kb on + strand, within Psyr_0543 at 614.317 kb on - strand, within Psyr_0543 at 614.317 kb on - strand, within Psyr_0543 at 614.317 kb on - strand, within Psyr_0543 at 614.589 kb on + strand, within Psyr_0543 at 614.589 kb on + strand, within Psyr_0543 at 614.774 kb on - strand at 614.777 kb on + strand at 614.777 kb on + strand at 614.778 kb on - strand at 614.814 kb on + strand at 614.814 kb on + strand at 614.814 kb on + strand at 614.815 kb on - strand at 614.815 kb on - strand at 614.815 kb on - strand at 614.849 kb on - strand at 614.857 kb on + strand at 614.857 kb on + strand at 614.876 kb on - strand at 614.876 kb on - strand at 614.876 kb on - strand at 614.904 kb on + strand at 614.904 kb on + strand at 614.904 kb on + strand at 614.905 kb on - strand at 614.905 kb on - strand at 614.905 kb on - strand at 614.905 kb on - strand at 614.937 kb on + strand at 614.938 kb on - strand at 614.938 kb on - strand at 614.938 kb on - strand at 614.938 kb on - strand at 615.062 kb on + strand at 615.063 kb on - strand at 615.141 kb on + strand at 615.141 kb on + strand at 615.141 kb on + strand at 615.142 kb on - strand at 615.178 kb on + strand at 615.178 kb on + strand at 615.178 kb on + strand at 615.178 kb on + strand at 615.178 kb on + strand at 615.178 kb on + strand at 615.180 kb on + strand at 615.180 kb on + strand at 615.180 kb on + strand at 615.180 kb on + strand at 615.181 kb on - strand at 615.181 kb on - strand at 615.181 kb on - strand at 615.181 kb on - strand at 615.181 kb on - strand at 615.181 kb on - strand at 615.266 kb on + strand at 615.267 kb on - strand at 615.371 kb on + strand, within Psyr_0544 at 615.371 kb on + strand, within Psyr_0544 at 615.372 kb on - strand, within Psyr_0544 at 615.389 kb on + strand, within Psyr_0544 at 615.605 kb on + strand, within Psyr_0544 at 615.606 kb on - strand, within Psyr_0544 at 615.606 kb on - strand, within Psyr_0544 at 615.641 kb on + strand, within Psyr_0544 at 615.641 kb on + strand, within Psyr_0544 at 615.641 kb on + strand, within Psyr_0544 at 615.641 kb on + strand, within Psyr_0544 at 615.641 kb on + strand, within Psyr_0544 at 615.641 kb on + strand, within Psyr_0544 at 615.642 kb on - strand, within Psyr_0544 at 615.733 kb on + strand, within Psyr_0544 at 615.734 kb on - strand, within Psyr_0544 at 616.043 kb on + strand, within Psyr_0544 at 616.043 kb on + strand, within Psyr_0544 at 616.043 kb on + strand, within Psyr_0544 at 616.044 kb on - strand, within Psyr_0544 at 616.044 kb on - strand, within Psyr_0544 at 616.140 kb on - strand, within Psyr_0544 at 616.173 kb on - strand, within Psyr_0544 at 616.272 kb on - strand, within Psyr_0544 at 616.272 kb on - strand, within Psyr_0544 at 616.272 kb on - strand, within Psyr_0544 at 616.311 kb on - strand, within Psyr_0544 at 616.532 kb on + strand, within Psyr_0544 at 616.532 kb on + strand, within Psyr_0544 at 616.533 kb on - strand, within Psyr_0544 at 616.533 kb on - strand, within Psyr_0544 at 616.637 kb on + strand, within Psyr_0544 at 616.638 kb on - strand, within Psyr_0544 at 616.638 kb on - strand, within Psyr_0544 at 616.638 kb on - strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.703 kb on + strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.704 kb on - strand, within Psyr_0544 at 616.847 kb on + strand, within Psyr_0544 at 616.953 kb on - strand at 617.038 kb on + strand at 617.048 kb on + strand at 617.048 kb on + strand at 617.048 kb on + strand at 617.049 kb on - strand at 617.049 kb on - strand at 617.049 kb on - strand at 617.049 kb on - strand at 617.049 kb on - strand at 617.060 kb on + strand at 617.060 kb on + strand at 617.060 kb on + strand at 617.060 kb on + strand at 617.081 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.083 kb on + strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.084 kb on - strand at 617.117 kb on + strand at 617.117 kb on + strand at 617.161 kb on - strand at 617.161 kb on - strand at 617.172 kb on + strand at 617.173 kb on - strand at 617.173 kb on - strand at 617.173 kb on - strand at 617.189 kb on + strand at 617.189 kb on + strand at 617.190 kb on - strand at 617.190 kb on - strand at 617.190 kb on - strand at 617.190 kb on - strand at 617.190 kb on - strand at 617.371 kb on + strand at 617.371 kb on + strand at 617.371 kb on + strand at 617.402 kb on - strand at 617.499 kb on + strand at 617.499 kb on + strand at 617.499 kb on + strand at 617.500 kb on - strand at 617.500 kb on - strand at 617.512 kb on + strand at 617.512 kb on + strand at 617.512 kb on + strand at 617.512 kb on + strand at 617.513 kb on - strand at 617.513 kb on - strand at 617.513 kb on - strand at 617.513 kb on - strand at 617.513 kb on - strand at 617.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 614,173 - Psyr_0543 0.60 +1.3 614,173 - Psyr_0543 0.60 +0.3 614,306 + Psyr_0543 0.69 +0.8 614,306 + Psyr_0543 0.69 -0.5 614,316 + Psyr_0543 0.70 -1.3 614,316 + Psyr_0543 0.70 +3.5 614,316 + Psyr_0543 0.70 -0.1 614,317 - Psyr_0543 0.70 -0.0 614,317 - Psyr_0543 0.70 -1.0 614,317 - Psyr_0543 0.70 -1.2 614,589 + Psyr_0543 0.89 +0.4 614,589 + Psyr_0543 0.89 +0.8 614,774 - -2.3 614,777 + -1.8 614,777 + +0.7 614,778 - -1.1 614,814 + +2.1 614,814 + +0.3 614,814 + -1.0 614,815 - +1.3 614,815 - +0.7 614,815 - -1.7 614,849 - +0.8 614,857 + +0.1 614,857 + +0.1 614,876 - +0.3 614,876 - -2.0 614,876 - -2.3 614,904 + -0.1 614,904 + -0.4 614,904 + -2.3 614,905 - -1.0 614,905 - -3.7 614,905 - +0.3 614,905 - -1.7 614,937 + -0.6 614,938 - -2.4 614,938 - -3.4 614,938 - -2.3 614,938 - -0.7 615,062 + -3.4 615,063 - -3.3 615,141 + -0.7 615,141 + -0.1 615,141 + +0.9 615,142 - -3.0 615,178 + -2.6 615,178 + -1.7 615,178 + -0.1 615,178 + -3.4 615,178 + -2.3 615,178 + -2.3 615,180 + -0.7 615,180 + -1.8 615,180 + -2.5 615,180 + -2.9 615,181 - -2.5 615,181 - -0.7 615,181 - -3.3 615,181 - -2.7 615,181 - -1.9 615,181 - -1.9 615,266 + -1.4 615,267 - +0.3 615,371 + Psyr_0544 0.10 -2.9 615,371 + Psyr_0544 0.10 -3.4 615,372 - Psyr_0544 0.11 -3.4 615,389 + Psyr_0544 0.11 -0.4 615,605 + Psyr_0544 0.23 -3.5 615,606 - Psyr_0544 0.23 -0.7 615,606 - Psyr_0544 0.23 -2.0 615,641 + Psyr_0544 0.25 +0.3 615,641 + Psyr_0544 0.25 -2.0 615,641 + Psyr_0544 0.25 -0.7 615,641 + Psyr_0544 0.25 -3.1 615,641 + Psyr_0544 0.25 -3.2 615,641 + Psyr_0544 0.25 -3.6 615,642 - Psyr_0544 0.25 -5.1 615,733 + Psyr_0544 0.30 -1.4 615,734 - Psyr_0544 0.30 +0.3 616,043 + Psyr_0544 0.46 -4.1 616,043 + Psyr_0544 0.46 -3.1 616,043 + Psyr_0544 0.46 -1.0 616,044 - Psyr_0544 0.46 -0.7 616,044 - Psyr_0544 0.46 +0.3 616,140 - Psyr_0544 0.51 -3.3 616,173 - Psyr_0544 0.53 -0.4 616,272 - Psyr_0544 0.58 -2.7 616,272 - Psyr_0544 0.58 -2.3 616,272 - Psyr_0544 0.58 -0.4 616,311 - Psyr_0544 0.60 -2.2 616,532 + Psyr_0544 0.72 -3.3 616,532 + Psyr_0544 0.72 -3.8 616,533 - Psyr_0544 0.72 -3.6 616,533 - Psyr_0544 0.72 -1.6 616,637 + Psyr_0544 0.77 -1.7 616,638 - Psyr_0544 0.78 -2.7 616,638 - Psyr_0544 0.78 -3.0 616,638 - Psyr_0544 0.78 -3.1 616,703 + Psyr_0544 0.81 -3.4 616,703 + Psyr_0544 0.81 -0.3 616,703 + Psyr_0544 0.81 -1.7 616,703 + Psyr_0544 0.81 -0.4 616,703 + Psyr_0544 0.81 -1.3 616,703 + Psyr_0544 0.81 -3.7 616,703 + Psyr_0544 0.81 -0.7 616,704 - Psyr_0544 0.81 +0.0 616,704 - Psyr_0544 0.81 -2.5 616,704 - Psyr_0544 0.81 -1.5 616,704 - Psyr_0544 0.81 -1.7 616,847 + Psyr_0544 0.89 -0.7 616,953 - -0.7 617,038 + +0.3 617,048 + -1.7 617,048 + -2.3 617,048 + -1.3 617,049 - -2.2 617,049 - -0.9 617,049 - -1.0 617,049 - -1.2 617,049 - -1.3 617,060 + +0.3 617,060 + -0.4 617,060 + -3.1 617,060 + -0.3 617,081 + -0.1 617,083 + -0.5 617,083 + -0.2 617,083 + +0.3 617,083 + +1.9 617,083 + -1.4 617,083 + -1.3 617,083 + -1.6 617,083 + -0.4 617,083 + -1.3 617,083 + -0.9 617,083 + -0.7 617,084 - -2.0 617,084 - +0.9 617,084 - -0.5 617,084 - -0.4 617,084 - -0.0 617,084 - -1.2 617,084 - +0.4 617,084 - -1.3 617,117 + -2.3 617,117 + -0.0 617,161 - -1.1 617,161 - -0.3 617,172 + -0.4 617,173 - -2.0 617,173 - -0.4 617,173 - +0.9 617,189 + -1.5 617,189 + -0.3 617,190 - -2.3 617,190 - +1.0 617,190 - -0.2 617,190 - -0.7 617,190 - +2.3 617,371 + +1.1 617,371 + -0.9 617,371 + +0.1 617,402 - -1.6 617,499 + -0.7 617,499 + +1.0 617,499 + -0.7 617,500 - +1.7 617,500 - +1.7 617,512 + -0.2 617,512 + -0.1 617,512 + +0.7 617,512 + -1.4 617,513 - -2.7 617,513 - +0.6 617,513 - +0.4 617,513 - +0.5 617,513 - +0.9 617,513 - +0.5
Or see this region's nucleotide sequence