Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0508

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0507 and Psyr_0508 are separated by 83 nucleotidesPsyr_0508 and Psyr_0509 are separated by 296 nucleotides Psyr_0507: Psyr_0507 - Na+/solute symporter, at 562,015 to 563,574 _0507 Psyr_0508: Psyr_0508 - lyase, putative, at 563,658 to 564,329 _0508 Psyr_0509: Psyr_0509 - PAS:GGDEF, at 564,626 to 566,785 _0509 Position (kb) 563 564 565Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 562.828 kb on + strand, within Psyr_0507at 562.829 kb on - strand, within Psyr_0507at 562.845 kb on + strand, within Psyr_0507at 562.846 kb on - strand, within Psyr_0507at 562.969 kb on + strand, within Psyr_0507at 563.107 kb on - strand, within Psyr_0507at 563.107 kb on - strand, within Psyr_0507at 563.158 kb on + strand, within Psyr_0507at 563.158 kb on + strand, within Psyr_0507at 563.158 kb on + strand, within Psyr_0507at 563.159 kb on - strand, within Psyr_0507at 563.159 kb on - strand, within Psyr_0507at 563.159 kb on - strand, within Psyr_0507at 563.159 kb on - strand, within Psyr_0507at 563.167 kb on + strand, within Psyr_0507at 563.167 kb on + strand, within Psyr_0507at 563.167 kb on + strand, within Psyr_0507at 563.207 kb on + strand, within Psyr_0507at 563.443 kb on + strandat 563.444 kb on - strandat 563.633 kb on - strandat 563.633 kb on - strandat 563.689 kb on + strandat 563.689 kb on + strandat 563.689 kb on + strandat 563.690 kb on - strandat 563.690 kb on - strandat 563.690 kb on - strandat 563.740 kb on + strand, within Psyr_0508at 563.740 kb on + strand, within Psyr_0508at 563.740 kb on + strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.758 kb on + strand, within Psyr_0508at 563.759 kb on - strand, within Psyr_0508at 563.759 kb on - strand, within Psyr_0508at 563.759 kb on - strand, within Psyr_0508at 563.857 kb on + strand, within Psyr_0508at 563.857 kb on + strand, within Psyr_0508at 563.857 kb on + strand, within Psyr_0508at 563.857 kb on + strand, within Psyr_0508at 563.858 kb on - strand, within Psyr_0508at 563.858 kb on - strand, within Psyr_0508at 563.858 kb on - strand, within Psyr_0508at 563.858 kb on - strand, within Psyr_0508at 563.890 kb on - strand, within Psyr_0508at 563.890 kb on - strand, within Psyr_0508at 563.900 kb on - strand, within Psyr_0508at 563.974 kb on + strand, within Psyr_0508at 563.975 kb on - strand, within Psyr_0508at 563.975 kb on - strand, within Psyr_0508at 563.975 kb on - strand, within Psyr_0508at 563.975 kb on - strand, within Psyr_0508at 564.013 kb on + strand, within Psyr_0508at 564.014 kb on - strand, within Psyr_0508at 564.014 kb on - strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.022 kb on - strand, within Psyr_0508at 564.022 kb on - strand, within Psyr_0508at 564.022 kb on - strand, within Psyr_0508at 564.054 kb on + strand, within Psyr_0508at 564.054 kb on + strand, within Psyr_0508at 564.055 kb on - strand, within Psyr_0508at 564.055 kb on - strand, within Psyr_0508at 564.055 kb on - strand, within Psyr_0508at 564.113 kb on + strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.160 kb on + strand, within Psyr_0508at 564.160 kb on + strand, within Psyr_0508at 564.160 kb on + strand, within Psyr_0508at 564.179 kb on + strand, within Psyr_0508at 564.232 kb on + strand, within Psyr_0508at 564.233 kb on - strand, within Psyr_0508at 564.233 kb on - strand, within Psyr_0508at 564.233 kb on - strand, within Psyr_0508at 564.236 kb on + strand, within Psyr_0508at 564.236 kb on + strand, within Psyr_0508at 564.245 kb on - strand, within Psyr_0508at 564.252 kb on + strand, within Psyr_0508at 564.252 kb on + strand, within Psyr_0508at 564.253 kb on - strand, within Psyr_0508at 564.253 kb on - strand, within Psyr_0508at 564.253 kb on - strand, within Psyr_0508at 564.255 kb on + strand, within Psyr_0508at 564.255 kb on + strand, within Psyr_0508at 564.256 kb on - strand, within Psyr_0508at 564.256 kb on - strand, within Psyr_0508at 564.256 kb on - strand, within Psyr_0508at 564.324 kb on + strandat 564.356 kb on + strandat 564.356 kb on + strandat 564.356 kb on + strandat 564.357 kb on - strandat 564.402 kb on + strandat 564.402 kb on + strandat 564.403 kb on - strandat 564.597 kb on + strandat 564.597 kb on + strandat 564.597 kb on + strandat 564.597 kb on + strandat 564.598 kb on - strandat 564.598 kb on - strandat 564.690 kb on + strandat 564.691 kb on - strandat 564.699 kb on + strandat 564.783 kb on + strandat 564.784 kb on - strandat 564.798 kb on + strandat 564.799 kb on - strandat 564.963 kb on - strand, within Psyr_0509at 564.983 kb on + strand, within Psyr_0509at 564.983 kb on + strand, within Psyr_0509at 564.983 kb on + strand, within Psyr_0509at 564.983 kb on + strand, within Psyr_0509at 564.983 kb on + strand, within Psyr_0509at 565.197 kb on + strand, within Psyr_0509at 565.197 kb on + strand, within Psyr_0509at 565.198 kb on - strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.245 kb on - strand, within Psyr_0509at 565.245 kb on - strand, within Psyr_0509at 565.245 kb on - strand, within Psyr_0509at 565.245 kb on - strand, within Psyr_0509at 565.245 kb on - strand, within Psyr_0509at 565.245 kb on - strand, within Psyr_0509at 565.263 kb on + strand, within Psyr_0509at 565.263 kb on + strand, within Psyr_0509at 565.263 kb on + strand, within Psyr_0509at 565.264 kb on - strand, within Psyr_0509at 565.289 kb on + strand, within Psyr_0509at 565.290 kb on - strand, within Psyr_0509at 565.317 kb on - strand, within Psyr_0509at 565.317 kb on - strand, within Psyr_0509

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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562,828 + Psyr_0507 0.52 -1.3
562,829 - Psyr_0507 0.52 +0.3
562,845 + Psyr_0507 0.53 -2.1
562,846 - Psyr_0507 0.53 -0.3
562,969 + Psyr_0507 0.61 +1.3
563,107 - Psyr_0507 0.70 -0.8
563,107 - Psyr_0507 0.70 +1.3
563,158 + Psyr_0507 0.73 -3.5
563,158 + Psyr_0507 0.73 +0.9
563,158 + Psyr_0507 0.73 +1.3
563,159 - Psyr_0507 0.73 +0.3
563,159 - Psyr_0507 0.73 -0.6
563,159 - Psyr_0507 0.73 +0.3
563,159 - Psyr_0507 0.73 +1.3
563,167 + Psyr_0507 0.74 -0.8
563,167 + Psyr_0507 0.74 -2.0
563,167 + Psyr_0507 0.74 -1.6
563,207 + Psyr_0507 0.76 -3.0
563,443 + -2.1
563,444 - -2.1
563,633 - +0.6
563,633 - -0.3
563,689 + -0.1
563,689 + +0.9
563,689 + +1.1
563,690 - +0.2
563,690 - -1.3
563,690 - -0.5
563,740 + Psyr_0508 0.12 -0.5
563,740 + Psyr_0508 0.12 -0.7
563,740 + Psyr_0508 0.12 +0.7
563,741 - Psyr_0508 0.12 +0.3
563,741 - Psyr_0508 0.12 -0.2
563,741 - Psyr_0508 0.12 +1.1
563,741 - Psyr_0508 0.12 -0.5
563,741 - Psyr_0508 0.12 -0.2
563,741 - Psyr_0508 0.12 -2.0
563,741 - Psyr_0508 0.12 -0.5
563,758 + Psyr_0508 0.15 +0.6
563,759 - Psyr_0508 0.15 -0.3
563,759 - Psyr_0508 0.15 +0.3
563,759 - Psyr_0508 0.15 +1.7
563,857 + Psyr_0508 0.30 -0.4
563,857 + Psyr_0508 0.30 -1.1
563,857 + Psyr_0508 0.30 -0.7
563,857 + Psyr_0508 0.30 +1.1
563,858 - Psyr_0508 0.30 +0.7
563,858 - Psyr_0508 0.30 +0.7
563,858 - Psyr_0508 0.30 +1.1
563,858 - Psyr_0508 0.30 +1.6
563,890 - Psyr_0508 0.35 +0.2
563,890 - Psyr_0508 0.35 -1.5
563,900 - Psyr_0508 0.36 -0.2
563,974 + Psyr_0508 0.47 -0.3
563,975 - Psyr_0508 0.47 +1.6
563,975 - Psyr_0508 0.47 +2.9
563,975 - Psyr_0508 0.47 +0.4
563,975 - Psyr_0508 0.47 -2.3
564,013 + Psyr_0508 0.53 -1.2
564,014 - Psyr_0508 0.53 +0.3
564,014 - Psyr_0508 0.53 +0.1
564,021 + Psyr_0508 0.54 +0.9
564,021 + Psyr_0508 0.54 +1.0
564,021 + Psyr_0508 0.54 -0.7
564,021 + Psyr_0508 0.54 -0.7
564,021 + Psyr_0508 0.54 +0.7
564,021 + Psyr_0508 0.54 +2.2
564,021 + Psyr_0508 0.54 -0.0
564,021 + Psyr_0508 0.54 -1.1
564,022 - Psyr_0508 0.54 -1.3
564,022 - Psyr_0508 0.54 -0.5
564,022 - Psyr_0508 0.54 +0.7
564,054 + Psyr_0508 0.59 -3.1
564,054 + Psyr_0508 0.59 +0.3
564,055 - Psyr_0508 0.59 -1.3
564,055 - Psyr_0508 0.59 +0.8
564,055 - Psyr_0508 0.59 +1.0
564,113 + Psyr_0508 0.68 -3.0
564,114 - Psyr_0508 0.68 +0.5
564,114 - Psyr_0508 0.68 -1.3
564,114 - Psyr_0508 0.68 -0.8
564,114 - Psyr_0508 0.68 +2.4
564,114 - Psyr_0508 0.68 -0.9
564,114 - Psyr_0508 0.68 +0.5
564,114 - Psyr_0508 0.68 -0.3
564,114 - Psyr_0508 0.68 -1.0
564,160 + Psyr_0508 0.75 +0.4
564,160 + Psyr_0508 0.75 +1.1
564,160 + Psyr_0508 0.75 +1.3
564,179 + Psyr_0508 0.78 +0.3
564,232 + Psyr_0508 0.85 +0.1
564,233 - Psyr_0508 0.86 -2.7
564,233 - Psyr_0508 0.86 -0.0
564,233 - Psyr_0508 0.86 -1.5
564,236 + Psyr_0508 0.86 +0.7
564,236 + Psyr_0508 0.86 +0.9
564,245 - Psyr_0508 0.87 -1.2
564,252 + Psyr_0508 0.88 -1.7
564,252 + Psyr_0508 0.88 +0.1
564,253 - Psyr_0508 0.89 +1.5
564,253 - Psyr_0508 0.89 -0.4
564,253 - Psyr_0508 0.89 -0.4
564,255 + Psyr_0508 0.89 -0.7
564,255 + Psyr_0508 0.89 -3.1
564,256 - Psyr_0508 0.89 -0.5
564,256 - Psyr_0508 0.89 +0.7
564,256 - Psyr_0508 0.89 -0.9
564,324 + -0.1
564,356 + -2.0
564,356 + +0.6
564,356 + +0.3
564,357 - -1.2
564,402 + +1.5
564,402 + -1.4
564,403 - -2.0
564,597 + +1.2
564,597 + -0.7
564,597 + +0.5
564,597 + -1.0
564,598 - -2.8
564,598 - +0.5
564,690 + +1.0
564,691 - -2.0
564,699 + -0.7
564,783 + +1.5
564,784 - +1.7
564,798 + +2.6
564,799 - -0.4
564,963 - Psyr_0509 0.16 +3.5
564,983 + Psyr_0509 0.17 -0.4
564,983 + Psyr_0509 0.17 +0.2
564,983 + Psyr_0509 0.17 -0.8
564,983 + Psyr_0509 0.17 +0.7
564,983 + Psyr_0509 0.17 +0.1
565,197 + Psyr_0509 0.26 +0.2
565,197 + Psyr_0509 0.26 +0.7
565,198 - Psyr_0509 0.26 -0.4
565,244 + Psyr_0509 0.29 +1.8
565,244 + Psyr_0509 0.29 +0.1
565,244 + Psyr_0509 0.29 +0.1
565,244 + Psyr_0509 0.29 +0.5
565,244 + Psyr_0509 0.29 +0.7
565,244 + Psyr_0509 0.29 -1.4
565,244 + Psyr_0509 0.29 -0.1
565,244 + Psyr_0509 0.29 -2.0
565,244 + Psyr_0509 0.29 +2.6
565,244 + Psyr_0509 0.29 -1.1
565,244 + Psyr_0509 0.29 +0.3
565,245 - Psyr_0509 0.29 -0.6
565,245 - Psyr_0509 0.29 -1.0
565,245 - Psyr_0509 0.29 +0.9
565,245 - Psyr_0509 0.29 -0.7
565,245 - Psyr_0509 0.29 -0.1
565,245 - Psyr_0509 0.29 -2.5
565,263 + Psyr_0509 0.29 +0.7
565,263 + Psyr_0509 0.29 -0.7
565,263 + Psyr_0509 0.29 -0.4
565,264 - Psyr_0509 0.30 +0.3
565,289 + Psyr_0509 0.31 -0.0
565,290 - Psyr_0509 0.31 +0.8
565,317 - Psyr_0509 0.32 +2.6
565,317 - Psyr_0509 0.32 +1.6

Or see this region's nucleotide sequence