Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24210 and BWI76_RS24215 are separated by 79 nucleotides BWI76_RS24215 and BWI76_RS24220 are separated by 98 nucleotides BWI76_RS24220 and BWI76_RS24225 are separated by 104 nucleotides
BWI76_RS24210: BWI76_RS24210 - cystathionine gamma-lyase, at 5,046,876 to 5,048,021
_RS24210
BWI76_RS24215: BWI76_RS24215 - LysR family transcriptional regulator, at 5,048,101 to 5,049,000
_RS24215
BWI76_RS24220: BWI76_RS24220 - short chain dehydrogenase, at 5,049,099 to 5,049,701
_RS24220
BWI76_RS24225: BWI76_RS24225 - hypothetical protein, at 5,049,806 to 5,050,144
_RS24225
Position (kb)
5048
5049
5050 Strain fitness (log2 ratio)
-2
-1
0
1 at 5047.117 kb on + strand, within BWI76_RS24210 at 5047.185 kb on - strand, within BWI76_RS24210 at 5047.195 kb on - strand, within BWI76_RS24210 at 5047.503 kb on - strand, within BWI76_RS24210 at 5047.596 kb on - strand, within BWI76_RS24210 at 5047.695 kb on + strand, within BWI76_RS24210 at 5047.816 kb on + strand, within BWI76_RS24210 at 5047.850 kb on + strand, within BWI76_RS24210 at 5048.010 kb on - strand at 5048.098 kb on + strand at 5048.098 kb on + strand at 5048.219 kb on + strand, within BWI76_RS24215 at 5048.249 kb on - strand, within BWI76_RS24215 at 5048.352 kb on - strand, within BWI76_RS24215 at 5048.645 kb on + strand, within BWI76_RS24215 at 5048.751 kb on + strand, within BWI76_RS24215 at 5048.872 kb on - strand, within BWI76_RS24215 at 5049.017 kb on - strand at 5049.040 kb on + strand at 5049.154 kb on + strand at 5049.378 kb on + strand, within BWI76_RS24220 at 5049.477 kb on + strand, within BWI76_RS24220 at 5049.549 kb on - strand, within BWI76_RS24220 at 5049.636 kb on + strand, within BWI76_RS24220 at 5049.636 kb on + strand, within BWI76_RS24220 at 5049.639 kb on - strand, within BWI76_RS24220 at 5049.644 kb on - strand at 5049.655 kb on + strand at 5049.853 kb on - strand, within BWI76_RS24225
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 5,047,117 + BWI76_RS24210 0.21 -0.5 5,047,185 - BWI76_RS24210 0.27 -0.6 5,047,195 - BWI76_RS24210 0.28 +0.1 5,047,503 - BWI76_RS24210 0.55 +0.6 5,047,596 - BWI76_RS24210 0.63 -0.5 5,047,695 + BWI76_RS24210 0.71 +0.1 5,047,816 + BWI76_RS24210 0.82 -1.1 5,047,850 + BWI76_RS24210 0.85 +1.4 5,048,010 - -0.6 5,048,098 + +0.5 5,048,098 + +0.5 5,048,219 + BWI76_RS24215 0.13 -0.8 5,048,249 - BWI76_RS24215 0.16 +0.4 5,048,352 - BWI76_RS24215 0.28 -1.8 5,048,645 + BWI76_RS24215 0.60 +1.3 5,048,751 + BWI76_RS24215 0.72 -1.8 5,048,872 - BWI76_RS24215 0.86 -0.5 5,049,017 - +0.8 5,049,040 + +0.1 5,049,154 + +0.2 5,049,378 + BWI76_RS24220 0.46 -0.5 5,049,477 + BWI76_RS24220 0.63 +0.3 5,049,549 - BWI76_RS24220 0.75 -0.3 5,049,636 + BWI76_RS24220 0.89 +0.7 5,049,636 + BWI76_RS24220 0.89 +0.2 5,049,639 - BWI76_RS24220 0.90 +0.3 5,049,644 - -1.0 5,049,655 + +0.5 5,049,853 - BWI76_RS24225 0.14 -0.3
Or see this region's nucleotide sequence