Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22320 and BWI76_RS22325 are separated by 17 nucleotides BWI76_RS22325 and BWI76_RS22330 are separated by 2 nucleotides
BWI76_RS22320: BWI76_RS22320 - hydrogenase 3 large subunit, at 4,652,151 to 4,653,860
_RS22320
BWI76_RS22325: BWI76_RS22325 - hydrogenase 3 membrane subunit, at 4,653,878 to 4,654,801
_RS22325
BWI76_RS22330: BWI76_RS22330 - formate hydrogenlyase subunit 3, at 4,654,804 to 4,656,630
_RS22330
Position (kb)
4653
4654
4655 Strain fitness (log2 ratio)
-1
0
1
2 at 4652.884 kb on - strand, within BWI76_RS22320 at 4652.932 kb on - strand, within BWI76_RS22320 at 4653.168 kb on + strand, within BWI76_RS22320 at 4653.222 kb on - strand, within BWI76_RS22320 at 4653.289 kb on + strand, within BWI76_RS22320 at 4653.314 kb on + strand, within BWI76_RS22320 at 4653.327 kb on - strand, within BWI76_RS22320 at 4653.353 kb on + strand, within BWI76_RS22320 at 4653.581 kb on + strand, within BWI76_RS22320 at 4653.607 kb on + strand, within BWI76_RS22320 at 4653.779 kb on + strand at 4653.956 kb on - strand at 4654.110 kb on + strand, within BWI76_RS22325 at 4654.128 kb on - strand, within BWI76_RS22325 at 4654.312 kb on - strand, within BWI76_RS22325 at 4654.328 kb on + strand, within BWI76_RS22325 at 4654.367 kb on - strand, within BWI76_RS22325 at 4654.576 kb on + strand, within BWI76_RS22325 at 4654.862 kb on + strand at 4655.163 kb on - strand, within BWI76_RS22330 at 4655.294 kb on - strand, within BWI76_RS22330 at 4655.321 kb on - strand, within BWI76_RS22330 at 4655.682 kb on - strand, within BWI76_RS22330
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 4,652,884 - BWI76_RS22320 0.43 -0.2 4,652,932 - BWI76_RS22320 0.46 +0.4 4,653,168 + BWI76_RS22320 0.59 -0.3 4,653,222 - BWI76_RS22320 0.63 +1.0 4,653,289 + BWI76_RS22320 0.67 -0.3 4,653,314 + BWI76_RS22320 0.68 -0.9 4,653,327 - BWI76_RS22320 0.69 -0.4 4,653,353 + BWI76_RS22320 0.70 +1.2 4,653,581 + BWI76_RS22320 0.84 +0.5 4,653,607 + BWI76_RS22320 0.85 +0.3 4,653,779 + -0.7 4,653,956 - +0.1 4,654,110 + BWI76_RS22325 0.25 -0.8 4,654,128 - BWI76_RS22325 0.27 -0.2 4,654,312 - BWI76_RS22325 0.47 +0.9 4,654,328 + BWI76_RS22325 0.49 +2.5 4,654,367 - BWI76_RS22325 0.53 +1.4 4,654,576 + BWI76_RS22325 0.76 -0.2 4,654,862 + -1.7 4,655,163 - BWI76_RS22330 0.20 -0.4 4,655,294 - BWI76_RS22330 0.27 -0.5 4,655,321 - BWI76_RS22330 0.28 +1.5 4,655,682 - BWI76_RS22330 0.48 +0.2
Or see this region's nucleotide sequence