Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21885

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS21880 and BWI76_RS21885 are separated by 10 nucleotidesBWI76_RS21885 and BWI76_RS21890 are separated by 12 nucleotides BWI76_RS21880: BWI76_RS21880 - agmatinase, at 4,572,269 to 4,573,219 _RS21880 BWI76_RS21885: BWI76_RS21885 - AP endonuclease, family 2, at 4,573,230 to 4,574,078 _RS21885 BWI76_RS21890: BWI76_RS21890 - oxidoreductase, at 4,574,091 to 4,575,167 _RS21890 Position (kb) 4573 4574 4575Strain fitness (log2 ratio) -1 0 1 2at 4572.552 kb on + strand, within BWI76_RS21880at 4572.562 kb on + strandat 4572.703 kb on + strand, within BWI76_RS21880at 4572.841 kb on + strand, within BWI76_RS21880at 4572.841 kb on + strand, within BWI76_RS21880at 4572.849 kb on - strand, within BWI76_RS21880at 4572.849 kb on - strand, within BWI76_RS21880at 4572.892 kb on + strand, within BWI76_RS21880at 4572.900 kb on - strand, within BWI76_RS21880at 4572.900 kb on - strandat 4572.955 kb on + strand, within BWI76_RS21880at 4573.006 kb on + strand, within BWI76_RS21880at 4573.261 kb on - strandat 4573.264 kb on + strandat 4573.431 kb on - strand, within BWI76_RS21885at 4573.513 kb on + strand, within BWI76_RS21885at 4573.615 kb on + strand, within BWI76_RS21885at 4573.791 kb on + strand, within BWI76_RS21885at 4573.799 kb on - strand, within BWI76_RS21885at 4573.799 kb on - strand, within BWI76_RS21885at 4573.890 kb on - strand, within BWI76_RS21885at 4574.040 kb on - strandat 4574.323 kb on + strand, within BWI76_RS21890at 4574.441 kb on + strand, within BWI76_RS21890at 4574.449 kb on - strand, within BWI76_RS21890at 4574.524 kb on + strand, within BWI76_RS21890at 4574.655 kb on + strand, within BWI76_RS21890at 4574.716 kb on - strand, within BWI76_RS21890at 4575.036 kb on + strand, within BWI76_RS21890at 4575.044 kb on - strand, within BWI76_RS21890at 4575.068 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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4,572,552 + BWI76_RS21880 0.30 +0.8
4,572,562 + +0.9
4,572,703 + BWI76_RS21880 0.46 +0.8
4,572,841 + BWI76_RS21880 0.60 +0.9
4,572,841 + BWI76_RS21880 0.60 +0.9
4,572,849 - BWI76_RS21880 0.61 -0.6
4,572,849 - BWI76_RS21880 0.61 -0.3
4,572,892 + BWI76_RS21880 0.66 +0.9
4,572,900 - BWI76_RS21880 0.66 -0.5
4,572,900 - +0.9
4,572,955 + BWI76_RS21880 0.72 +0.4
4,573,006 + BWI76_RS21880 0.77 +0.0
4,573,261 - -0.4
4,573,264 + +0.2
4,573,431 - BWI76_RS21885 0.24 +0.7
4,573,513 + BWI76_RS21885 0.33 -1.3
4,573,615 + BWI76_RS21885 0.45 -0.3
4,573,791 + BWI76_RS21885 0.66 -1.1
4,573,799 - BWI76_RS21885 0.67 -0.9
4,573,799 - BWI76_RS21885 0.67 -0.7
4,573,890 - BWI76_RS21885 0.78 -1.6
4,574,040 - -1.2
4,574,323 + BWI76_RS21890 0.22 -0.3
4,574,441 + BWI76_RS21890 0.32 +1.9
4,574,449 - BWI76_RS21890 0.33 -0.2
4,574,524 + BWI76_RS21890 0.40 +1.0
4,574,655 + BWI76_RS21890 0.52 -0.3
4,574,716 - BWI76_RS21890 0.58 -0.4
4,575,036 + BWI76_RS21890 0.88 +1.5
4,575,044 - BWI76_RS21890 0.88 +0.2
4,575,068 + -0.9

Or see this region's nucleotide sequence