Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19780 and BWI76_RS19785 are separated by 9 nucleotides BWI76_RS19785 and BWI76_RS19790 overlap by 1 nucleotides
BWI76_RS19780: BWI76_RS19780 - antibiotic ABC transporter substrate-binding protein, at 4,135,688 to 4,137,493
_RS19780
BWI76_RS19785: BWI76_RS19785 - microcin C ABC transporter permease YejB, at 4,137,503 to 4,138,597
_RS19785
BWI76_RS19790: BWI76_RS19790 - putative binding-protein-dependent transporter, at 4,138,597 to 4,139,622
_RS19790
Position (kb)
4137
4138
4139 Strain fitness (log2 ratio)
-2
-1
0
1 at 4136.674 kb on - strand, within BWI76_RS19780 at 4136.725 kb on - strand, within BWI76_RS19780 at 4136.808 kb on - strand, within BWI76_RS19780 at 4136.853 kb on - strand, within BWI76_RS19780 at 4136.975 kb on + strand, within BWI76_RS19780 at 4136.990 kb on - strand, within BWI76_RS19780 at 4137.365 kb on + strand at 4137.522 kb on + strand at 4137.747 kb on + strand, within BWI76_RS19785 at 4137.922 kb on - strand, within BWI76_RS19785 at 4137.935 kb on + strand, within BWI76_RS19785 at 4138.357 kb on - strand, within BWI76_RS19785 at 4138.387 kb on - strand, within BWI76_RS19785 at 4138.422 kb on - strand, within BWI76_RS19785 at 4138.554 kb on + strand at 4138.562 kb on - strand at 4138.837 kb on - strand, within BWI76_RS19790 at 4138.964 kb on - strand, within BWI76_RS19790 at 4139.086 kb on + strand, within BWI76_RS19790 at 4139.115 kb on + strand, within BWI76_RS19790 at 4139.181 kb on + strand, within BWI76_RS19790 at 4139.189 kb on - strand, within BWI76_RS19790 at 4139.393 kb on + strand, within BWI76_RS19790
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 4,136,674 - BWI76_RS19780 0.55 +0.7 4,136,725 - BWI76_RS19780 0.57 +1.2 4,136,808 - BWI76_RS19780 0.62 -0.3 4,136,853 - BWI76_RS19780 0.65 +0.1 4,136,975 + BWI76_RS19780 0.71 -1.1 4,136,990 - BWI76_RS19780 0.72 -0.9 4,137,365 + +0.2 4,137,522 + +0.5 4,137,747 + BWI76_RS19785 0.22 -0.6 4,137,922 - BWI76_RS19785 0.38 -1.5 4,137,935 + BWI76_RS19785 0.39 -1.2 4,138,357 - BWI76_RS19785 0.78 +0.5 4,138,387 - BWI76_RS19785 0.81 -1.3 4,138,422 - BWI76_RS19785 0.84 -0.1 4,138,554 + -1.1 4,138,562 - -0.8 4,138,837 - BWI76_RS19790 0.23 -0.7 4,138,964 - BWI76_RS19790 0.36 -0.5 4,139,086 + BWI76_RS19790 0.48 -2.5 4,139,115 + BWI76_RS19790 0.50 -0.5 4,139,181 + BWI76_RS19790 0.57 -1.9 4,139,189 - BWI76_RS19790 0.58 -0.6 4,139,393 + BWI76_RS19790 0.78 +0.8
Or see this region's nucleotide sequence