Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19200

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19190 and BWI76_RS19195 overlap by 4 nucleotidesBWI76_RS19195 and BWI76_RS19200 overlap by 4 nucleotidesBWI76_RS19200 and BWI76_RS19205 overlap by 1 nucleotides BWI76_RS19190: BWI76_RS19190 - oligopeptide/dipeptide ABC transporter ATPase, at 3,994,483 to 3,995,463 _RS19190 BWI76_RS19195: BWI76_RS19195 - nickel ABC transporter permease, at 3,995,460 to 3,996,306 _RS19195 BWI76_RS19200: BWI76_RS19200 - binding-protein-dependent transport system inner membrane protein, at 3,996,303 to 3,997,241 _RS19200 BWI76_RS19205: BWI76_RS19205 - putative proline iminopeptidase, at 3,997,241 to 3,998,140 _RS19205 Position (kb) 3996 3997 3998Strain fitness (log2 ratio) -2 -1 0 1 2at 3995.398 kb on - strandat 3995.504 kb on + strandat 3995.621 kb on + strand, within BWI76_RS19195at 3995.880 kb on - strand, within BWI76_RS19195at 3995.929 kb on + strand, within BWI76_RS19195at 3996.076 kb on - strand, within BWI76_RS19195at 3996.078 kb on - strand, within BWI76_RS19195at 3996.374 kb on + strandat 3996.433 kb on + strand, within BWI76_RS19200at 3996.586 kb on + strand, within BWI76_RS19200at 3996.654 kb on + strand, within BWI76_RS19200at 3996.968 kb on + strand, within BWI76_RS19200at 3997.091 kb on - strand, within BWI76_RS19200at 3997.807 kb on + strand, within BWI76_RS19205at 3997.906 kb on + strand, within BWI76_RS19205at 3997.948 kb on + strand, within BWI76_RS19205at 3998.075 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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3,995,398 - +0.8
3,995,504 + -0.2
3,995,621 + BWI76_RS19195 0.19 -0.3
3,995,880 - BWI76_RS19195 0.50 -0.2
3,995,929 + BWI76_RS19195 0.55 +2.0
3,996,076 - BWI76_RS19195 0.73 -1.0
3,996,078 - BWI76_RS19195 0.73 -0.7
3,996,374 + +0.5
3,996,433 + BWI76_RS19200 0.14 -0.7
3,996,586 + BWI76_RS19200 0.30 +0.5
3,996,654 + BWI76_RS19200 0.37 -1.6
3,996,968 + BWI76_RS19200 0.71 -1.9
3,997,091 - BWI76_RS19200 0.84 -0.2
3,997,807 + BWI76_RS19205 0.63 -1.4
3,997,906 + BWI76_RS19205 0.74 +1.2
3,997,948 + BWI76_RS19205 0.79 +1.0
3,998,075 + -1.0

Or see this region's nucleotide sequence