Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17415

Experiment: Sisomicin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS17410 and BWI76_RS17415 are separated by 89 nucleotidesBWI76_RS17415 and BWI76_RS17420 are separated by 39 nucleotidesBWI76_RS17420 and BWI76_RS17425 are separated by 3 nucleotides BWI76_RS17410: BWI76_RS17410 - sodium-potassium/proton antiporter ChaA, at 3,611,392 to 3,612,492 _RS17410 BWI76_RS17415: BWI76_RS17415 - 3-deoxy-8-phosphooctulonate synthase, at 3,612,582 to 3,613,436 _RS17415 BWI76_RS17420: BWI76_RS17420 - hypothetical protein, at 3,613,476 to 3,614,288 _RS17420 BWI76_RS17425: BWI76_RS17425 - hypothetical protein, at 3,614,292 to 3,614,684 _RS17425 Position (kb) 3612 3613 3614Strain fitness (log2 ratio) -1 0 1at 3611.807 kb on + strand, within BWI76_RS17410at 3611.807 kb on + strand, within BWI76_RS17410at 3611.807 kb on + strand, within BWI76_RS17410at 3611.882 kb on - strand, within BWI76_RS17410at 3613.611 kb on - strand, within BWI76_RS17420at 3613.979 kb on - strand, within BWI76_RS17420at 3614.032 kb on - strand, within BWI76_RS17420

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
remove
3,611,807 + BWI76_RS17410 0.38 +0.9
3,611,807 + BWI76_RS17410 0.38 +0.2
3,611,807 + BWI76_RS17410 0.38 -0.3
3,611,882 - BWI76_RS17410 0.45 -0.3
3,613,611 - BWI76_RS17420 0.17 +0.6
3,613,979 - BWI76_RS17420 0.62 +0.1
3,614,032 - BWI76_RS17420 0.68 +0.1

Or see this region's nucleotide sequence