Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16650 and BWI76_RS16655 are separated by 30 nucleotides BWI76_RS16655 and BWI76_RS16660 are separated by 308 nucleotides BWI76_RS16660 and BWI76_RS16665 are separated by 1 nucleotides BWI76_RS16665 and BWI76_RS16670 are separated by 22 nucleotides
BWI76_RS16650: BWI76_RS16650 - glyoxalase I, nickel isomerase, at 3,446,577 to 3,446,960
_RS16650
BWI76_RS16655: BWI76_RS16655 - CatA-like O-acetyltransferase, at 3,446,991 to 3,447,630
_RS16655
BWI76_RS16660: BWI76_RS16660 - SfnB family sulfur acquisition oxidoreductase, at 3,447,939 to 3,449,162
_RS16660
BWI76_RS16665: BWI76_RS16665 - ABC transporter permease, at 3,449,164 to 3,449,838
_RS16665
BWI76_RS16670: BWI76_RS16670 - NLPA lipoprotein, at 3,449,861 to 3,450,637
_RS16670
Position (kb)
3447
3448
3449
3450 Strain fitness (log2 ratio)
-1
0
1
2 at 3446.960 kb on + strand at 3446.981 kb on + strand at 3447.073 kb on + strand, within BWI76_RS16655 at 3447.131 kb on - strand, within BWI76_RS16655 at 3447.451 kb on - strand, within BWI76_RS16655 at 3447.463 kb on - strand, within BWI76_RS16655 at 3447.493 kb on - strand, within BWI76_RS16655 at 3447.735 kb on - strand at 3448.498 kb on - strand, within BWI76_RS16660 at 3448.626 kb on - strand, within BWI76_RS16660 at 3448.819 kb on + strand, within BWI76_RS16660 at 3448.958 kb on + strand, within BWI76_RS16660 at 3449.066 kb on + strand at 3449.513 kb on - strand, within BWI76_RS16665 at 3449.537 kb on + strand, within BWI76_RS16665 at 3449.538 kb on - strand, within BWI76_RS16665 at 3449.712 kb on - strand, within BWI76_RS16665 at 3449.880 kb on + strand at 3450.033 kb on + strand, within BWI76_RS16670 at 3450.041 kb on - strand, within BWI76_RS16670 at 3450.124 kb on - strand, within BWI76_RS16670
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 3,446,960 + +0.6 3,446,981 + -1.0 3,447,073 + BWI76_RS16655 0.13 -1.1 3,447,131 - BWI76_RS16655 0.22 -1.5 3,447,451 - BWI76_RS16655 0.72 -0.9 3,447,463 - BWI76_RS16655 0.74 -1.4 3,447,493 - BWI76_RS16655 0.78 -0.2 3,447,735 - +0.1 3,448,498 - BWI76_RS16660 0.46 +0.7 3,448,626 - BWI76_RS16660 0.56 +0.3 3,448,819 + BWI76_RS16660 0.72 +2.0 3,448,958 + BWI76_RS16660 0.83 -1.2 3,449,066 + -0.7 3,449,513 - BWI76_RS16665 0.52 +1.0 3,449,537 + BWI76_RS16665 0.55 -0.2 3,449,538 - BWI76_RS16665 0.55 -1.6 3,449,712 - BWI76_RS16665 0.81 -0.2 3,449,880 + -1.2 3,450,033 + BWI76_RS16670 0.22 -0.1 3,450,041 - BWI76_RS16670 0.23 -0.3 3,450,124 - BWI76_RS16670 0.34 +0.0
Or see this region's nucleotide sequence