Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14955 and BWI76_RS14960 are separated by 217 nucleotides BWI76_RS14960 and BWI76_RS14965 are separated by 108 nucleotides
BWI76_RS14955: BWI76_RS14955 - peptidase M17 leucyl aminopeptidase domain-containing protein, at 3,134,239 to 3,135,594
_RS14955
BWI76_RS14960: BWI76_RS14960 - MFS transporter, at 3,135,812 to 3,137,011
_RS14960
BWI76_RS14965: BWI76_RS14965 - AraC family transcriptional regulator, at 3,137,120 to 3,138,076
_RS14965
Position (kb)
3135
3136
3137
3138 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3135.083 kb on + strand, within BWI76_RS14955 at 3135.123 kb on + strand, within BWI76_RS14955 at 3135.314 kb on + strand, within BWI76_RS14955 at 3135.319 kb on + strand, within BWI76_RS14955 at 3135.346 kb on + strand, within BWI76_RS14955 at 3135.393 kb on + strand, within BWI76_RS14955 at 3135.632 kb on - strand at 3135.733 kb on - strand at 3136.243 kb on + strand, within BWI76_RS14960 at 3136.251 kb on - strand, within BWI76_RS14960 at 3136.251 kb on - strand, within BWI76_RS14960 at 3136.289 kb on - strand, within BWI76_RS14960 at 3136.381 kb on - strand, within BWI76_RS14960 at 3136.427 kb on + strand, within BWI76_RS14960 at 3136.434 kb on + strand, within BWI76_RS14960 at 3136.792 kb on + strand, within BWI76_RS14960 at 3136.844 kb on + strand, within BWI76_RS14960 at 3136.928 kb on - strand at 3137.141 kb on - strand at 3137.265 kb on + strand, within BWI76_RS14965 at 3137.467 kb on + strand, within BWI76_RS14965 at 3137.507 kb on - strand, within BWI76_RS14965 at 3137.932 kb on - strand, within BWI76_RS14965 at 3137.985 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 3,135,083 + BWI76_RS14955 0.62 +0.3 3,135,123 + BWI76_RS14955 0.65 +3.4 3,135,314 + BWI76_RS14955 0.79 -0.6 3,135,319 + BWI76_RS14955 0.80 -0.1 3,135,346 + BWI76_RS14955 0.82 -0.1 3,135,393 + BWI76_RS14955 0.85 +0.4 3,135,632 - +0.1 3,135,733 - -0.1 3,136,243 + BWI76_RS14960 0.36 -1.9 3,136,251 - BWI76_RS14960 0.37 -0.2 3,136,251 - BWI76_RS14960 0.37 +1.2 3,136,289 - BWI76_RS14960 0.40 -0.0 3,136,381 - BWI76_RS14960 0.47 -0.2 3,136,427 + BWI76_RS14960 0.51 +4.1 3,136,434 + BWI76_RS14960 0.52 -0.7 3,136,792 + BWI76_RS14960 0.82 -0.3 3,136,844 + BWI76_RS14960 0.86 +0.3 3,136,928 - +0.1 3,137,141 - +0.4 3,137,265 + BWI76_RS14965 0.15 -0.5 3,137,467 + BWI76_RS14965 0.36 -0.1 3,137,507 - BWI76_RS14965 0.40 -0.8 3,137,932 - BWI76_RS14965 0.85 -0.4 3,137,985 - -0.7
Or see this region's nucleotide sequence