Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13525 and BWI76_RS13530 overlap by 4 nucleotides BWI76_RS13530 and BWI76_RS13535 are separated by 30 nucleotides
BWI76_RS13525: BWI76_RS13525 - putative luciferase-like monooxygenase, at 2,820,046 to 2,821,047
_RS13525
BWI76_RS13530: BWI76_RS13530 - amidohydrolase family protein, at 2,821,044 to 2,822,165
_RS13530
BWI76_RS13535: BWI76_RS13535 - LLM class flavin-dependent oxidoreductase, at 2,822,196 to 2,823,512
_RS13535
Position (kb)
2821
2822
2823 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2820.358 kb on - strand, within BWI76_RS13525 at 2820.671 kb on + strand, within BWI76_RS13525 at 2820.911 kb on - strand, within BWI76_RS13525 at 2820.934 kb on + strand, within BWI76_RS13525 at 2820.990 kb on + strand at 2820.998 kb on - strand at 2821.427 kb on - strand, within BWI76_RS13530 at 2821.601 kb on - strand, within BWI76_RS13530 at 2821.712 kb on - strand, within BWI76_RS13530 at 2821.732 kb on - strand, within BWI76_RS13530 at 2821.811 kb on - strand, within BWI76_RS13530 at 2821.907 kb on + strand, within BWI76_RS13530 at 2821.907 kb on + strand, within BWI76_RS13530 at 2821.907 kb on + strand, within BWI76_RS13530 at 2821.954 kb on + strand, within BWI76_RS13530 at 2821.982 kb on + strand, within BWI76_RS13530 at 2822.029 kb on - strand, within BWI76_RS13530 at 2822.097 kb on - strand at 2822.118 kb on + strand at 2822.128 kb on - strand at 2822.168 kb on + strand at 2822.183 kb on - strand at 2822.188 kb on + strand at 2822.195 kb on - strand at 2822.195 kb on - strand at 2822.195 kb on - strand at 2822.196 kb on - strand at 2822.208 kb on + strand at 2822.229 kb on + strand at 2822.229 kb on + strand at 2822.229 kb on + strand at 2822.237 kb on - strand at 2822.237 kb on - strand at 2822.237 kb on - strand at 2822.237 kb on - strand at 2822.239 kb on + strand at 2822.264 kb on + strand at 2822.300 kb on + strand at 2822.413 kb on + strand, within BWI76_RS13535 at 2822.442 kb on - strand, within BWI76_RS13535 at 2822.461 kb on + strand, within BWI76_RS13535 at 2822.461 kb on + strand, within BWI76_RS13535 at 2822.466 kb on + strand, within BWI76_RS13535 at 2822.466 kb on + strand, within BWI76_RS13535 at 2822.471 kb on + strand, within BWI76_RS13535 at 2822.471 kb on + strand, within BWI76_RS13535 at 2822.471 kb on + strand, within BWI76_RS13535 at 2822.471 kb on + strand, within BWI76_RS13535 at 2822.471 kb on + strand, within BWI76_RS13535 at 2822.474 kb on - strand, within BWI76_RS13535 at 2822.479 kb on - strand, within BWI76_RS13535 at 2822.479 kb on - strand, within BWI76_RS13535 at 2822.479 kb on - strand, within BWI76_RS13535 at 2822.480 kb on + strand, within BWI76_RS13535 at 2822.488 kb on - strand, within BWI76_RS13535 at 2822.491 kb on - strand, within BWI76_RS13535 at 2822.502 kb on + strand, within BWI76_RS13535 at 2822.502 kb on + strand, within BWI76_RS13535 at 2822.502 kb on + strand, within BWI76_RS13535 at 2822.504 kb on + strand, within BWI76_RS13535 at 2822.504 kb on + strand, within BWI76_RS13535 at 2822.504 kb on - strand, within BWI76_RS13535 at 2822.510 kb on - strand, within BWI76_RS13535 at 2822.538 kb on + strand, within BWI76_RS13535 at 2822.567 kb on - strand, within BWI76_RS13535 at 2822.567 kb on - strand, within BWI76_RS13535 at 2822.568 kb on + strand, within BWI76_RS13535 at 2822.583 kb on - strand, within BWI76_RS13535 at 2822.591 kb on - strand, within BWI76_RS13535 at 2822.595 kb on + strand, within BWI76_RS13535 at 2822.595 kb on + strand, within BWI76_RS13535 at 2822.616 kb on + strand, within BWI76_RS13535 at 2822.624 kb on + strand at 2822.626 kb on + strand, within BWI76_RS13535 at 2822.626 kb on + strand, within BWI76_RS13535 at 2822.626 kb on + strand, within BWI76_RS13535 at 2822.634 kb on - strand, within BWI76_RS13535 at 2822.636 kb on + strand, within BWI76_RS13535 at 2822.644 kb on - strand, within BWI76_RS13535 at 2822.670 kb on + strand, within BWI76_RS13535 at 2822.670 kb on + strand, within BWI76_RS13535 at 2822.670 kb on + strand, within BWI76_RS13535 at 2822.670 kb on + strand, within BWI76_RS13535 at 2822.670 kb on + strand, within BWI76_RS13535 at 2822.670 kb on + strand, within BWI76_RS13535 at 2822.676 kb on + strand, within BWI76_RS13535 at 2822.677 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.678 kb on - strand, within BWI76_RS13535 at 2822.679 kb on - strand, within BWI76_RS13535 at 2822.679 kb on - strand, within BWI76_RS13535 at 2822.681 kb on + strand, within BWI76_RS13535 at 2822.684 kb on + strand, within BWI76_RS13535 at 2822.689 kb on + strand, within BWI76_RS13535 at 2822.689 kb on + strand, within BWI76_RS13535 at 2822.689 kb on + strand, within BWI76_RS13535 at 2822.697 kb on - strand, within BWI76_RS13535 at 2822.723 kb on - strand, within BWI76_RS13535 at 2822.727 kb on + strand at 2822.735 kb on - strand, within BWI76_RS13535 at 2822.766 kb on - strand, within BWI76_RS13535 at 2822.817 kb on + strand, within BWI76_RS13535 at 2822.825 kb on - strand, within BWI76_RS13535 at 2822.825 kb on - strand, within BWI76_RS13535 at 2822.888 kb on - strand, within BWI76_RS13535 at 2822.895 kb on + strand, within BWI76_RS13535 at 2822.946 kb on + strand, within BWI76_RS13535 at 2822.971 kb on + strand, within BWI76_RS13535 at 2823.018 kb on - strand, within BWI76_RS13535 at 2823.018 kb on - strand, within BWI76_RS13535 at 2823.045 kb on - strand, within BWI76_RS13535 at 2823.059 kb on - strand, within BWI76_RS13535 at 2823.100 kb on - strand, within BWI76_RS13535
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 2,820,358 - BWI76_RS13525 0.31 +4.7 2,820,671 + BWI76_RS13525 0.62 -1.4 2,820,911 - BWI76_RS13525 0.86 -0.6 2,820,934 + BWI76_RS13525 0.89 +0.3 2,820,990 + -2.0 2,820,998 - +0.7 2,821,427 - BWI76_RS13530 0.34 +1.5 2,821,601 - BWI76_RS13530 0.50 +0.2 2,821,712 - BWI76_RS13530 0.60 -0.4 2,821,732 - BWI76_RS13530 0.61 +2.6 2,821,811 - BWI76_RS13530 0.68 -0.1 2,821,907 + BWI76_RS13530 0.77 +0.6 2,821,907 + BWI76_RS13530 0.77 -0.8 2,821,907 + BWI76_RS13530 0.77 -0.5 2,821,954 + BWI76_RS13530 0.81 +0.3 2,821,982 + BWI76_RS13530 0.84 -0.1 2,822,029 - BWI76_RS13530 0.88 +1.1 2,822,097 - -1.4 2,822,118 + -1.2 2,822,128 - -0.2 2,822,168 + +1.7 2,822,183 - +0.6 2,822,188 + -0.8 2,822,195 - -1.5 2,822,195 - +1.9 2,822,195 - -0.5 2,822,196 - -1.0 2,822,208 + -2.0 2,822,229 + -1.3 2,822,229 + +1.9 2,822,229 + +1.7 2,822,237 - +2.5 2,822,237 - -0.3 2,822,237 - -1.2 2,822,237 - +1.1 2,822,239 + -0.0 2,822,264 + +0.5 2,822,300 + -1.1 2,822,413 + BWI76_RS13535 0.16 +1.6 2,822,442 - BWI76_RS13535 0.19 -0.8 2,822,461 + BWI76_RS13535 0.20 +0.0 2,822,461 + BWI76_RS13535 0.20 +0.5 2,822,466 + BWI76_RS13535 0.21 -1.3 2,822,466 + BWI76_RS13535 0.21 -0.4 2,822,471 + BWI76_RS13535 0.21 -1.1 2,822,471 + BWI76_RS13535 0.21 -0.6 2,822,471 + BWI76_RS13535 0.21 -0.4 2,822,471 + BWI76_RS13535 0.21 -1.5 2,822,471 + BWI76_RS13535 0.21 -0.6 2,822,474 - BWI76_RS13535 0.21 +1.6 2,822,479 - BWI76_RS13535 0.21 +1.6 2,822,479 - BWI76_RS13535 0.21 +0.1 2,822,479 - BWI76_RS13535 0.21 -0.1 2,822,480 + BWI76_RS13535 0.22 -0.8 2,822,488 - BWI76_RS13535 0.22 +0.5 2,822,491 - BWI76_RS13535 0.22 -1.4 2,822,502 + BWI76_RS13535 0.23 +0.8 2,822,502 + BWI76_RS13535 0.23 -0.8 2,822,502 + BWI76_RS13535 0.23 +0.9 2,822,504 + BWI76_RS13535 0.23 -2.8 2,822,504 + BWI76_RS13535 0.23 -0.6 2,822,504 - BWI76_RS13535 0.23 +0.9 2,822,510 - BWI76_RS13535 0.24 +1.5 2,822,538 + BWI76_RS13535 0.26 +1.9 2,822,567 - BWI76_RS13535 0.28 +0.3 2,822,567 - BWI76_RS13535 0.28 +0.5 2,822,568 + BWI76_RS13535 0.28 +0.9 2,822,583 - BWI76_RS13535 0.29 -1.9 2,822,591 - BWI76_RS13535 0.30 +1.6 2,822,595 + BWI76_RS13535 0.30 +2.6 2,822,595 + BWI76_RS13535 0.30 -1.7 2,822,616 + BWI76_RS13535 0.32 -0.6 2,822,624 + +4.5 2,822,626 + BWI76_RS13535 0.33 -0.0 2,822,626 + BWI76_RS13535 0.33 +0.3 2,822,626 + BWI76_RS13535 0.33 -2.4 2,822,634 - BWI76_RS13535 0.33 +0.1 2,822,636 + BWI76_RS13535 0.33 -0.4 2,822,644 - BWI76_RS13535 0.34 +0.1 2,822,670 + BWI76_RS13535 0.36 +0.4 2,822,670 + BWI76_RS13535 0.36 -0.7 2,822,670 + BWI76_RS13535 0.36 -0.4 2,822,670 + BWI76_RS13535 0.36 -2.0 2,822,670 + BWI76_RS13535 0.36 +1.3 2,822,670 + BWI76_RS13535 0.36 +1.2 2,822,676 + BWI76_RS13535 0.36 -0.1 2,822,677 - BWI76_RS13535 0.37 -0.2 2,822,678 - BWI76_RS13535 0.37 -0.9 2,822,678 - BWI76_RS13535 0.37 +2.7 2,822,678 - BWI76_RS13535 0.37 -0.5 2,822,678 - BWI76_RS13535 0.37 +0.2 2,822,678 - BWI76_RS13535 0.37 -1.8 2,822,678 - BWI76_RS13535 0.37 -1.5 2,822,678 - BWI76_RS13535 0.37 -1.8 2,822,678 - BWI76_RS13535 0.37 -0.7 2,822,678 - BWI76_RS13535 0.37 +1.1 2,822,679 - BWI76_RS13535 0.37 +1.9 2,822,679 - BWI76_RS13535 0.37 -0.5 2,822,681 + BWI76_RS13535 0.37 +0.9 2,822,684 + BWI76_RS13535 0.37 -1.5 2,822,689 + BWI76_RS13535 0.37 +1.9 2,822,689 + BWI76_RS13535 0.37 +1.0 2,822,689 + BWI76_RS13535 0.37 -0.2 2,822,697 - BWI76_RS13535 0.38 +1.1 2,822,723 - BWI76_RS13535 0.40 -0.9 2,822,727 + +0.6 2,822,735 - BWI76_RS13535 0.41 -0.0 2,822,766 - BWI76_RS13535 0.43 -0.0 2,822,817 + BWI76_RS13535 0.47 +0.7 2,822,825 - BWI76_RS13535 0.48 -0.4 2,822,825 - BWI76_RS13535 0.48 -0.6 2,822,888 - BWI76_RS13535 0.53 -0.6 2,822,895 + BWI76_RS13535 0.53 -0.4 2,822,946 + BWI76_RS13535 0.57 -1.6 2,822,971 + BWI76_RS13535 0.59 +2.2 2,823,018 - BWI76_RS13535 0.62 -1.0 2,823,018 - BWI76_RS13535 0.62 -0.0 2,823,045 - BWI76_RS13535 0.64 -0.3 2,823,059 - BWI76_RS13535 0.66 +0.8 2,823,100 - BWI76_RS13535 0.69 -1.0
Or see this region's nucleotide sequence