Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09695 and BWI76_RS09700 are separated by 42 nucleotides BWI76_RS09700 and BWI76_RS09705 are separated by 42 nucleotides BWI76_RS09705 and BWI76_RS09710 overlap by 1 nucleotides BWI76_RS09710 and BWI76_RS09715 are separated by 12 nucleotides
BWI76_RS09695: BWI76_RS09695 - MFS transporter, at 2,032,899 to 2,034,047
_RS09695
BWI76_RS09700: BWI76_RS09700 - PTS IIA-like nitrogen-regulatory protein PtsN, at 2,034,090 to 2,034,527
_RS09700
BWI76_RS09705: BWI76_RS09705 - transketolase, at 2,034,570 to 2,035,481
_RS09705
BWI76_RS09710: BWI76_RS09710 - transketolase, at 2,035,481 to 2,036,278
_RS09710
BWI76_RS09715: BWI76_RS09715 - hypothetical protein, at 2,036,291 to 2,037,556
_RS09715
Position (kb)
2034
2035
2036 Strain fitness (log2 ratio)
-1
0
1 at 2033.644 kb on + strand, within BWI76_RS09695 at 2033.706 kb on + strand, within BWI76_RS09695 at 2033.714 kb on - strand, within BWI76_RS09695 at 2033.887 kb on + strand, within BWI76_RS09695 at 2034.049 kb on - strand at 2034.370 kb on - strand, within BWI76_RS09700 at 2034.588 kb on - strand at 2034.588 kb on - strand at 2034.774 kb on + strand, within BWI76_RS09705 at 2035.011 kb on + strand, within BWI76_RS09705 at 2035.019 kb on - strand, within BWI76_RS09705 at 2035.019 kb on - strand, within BWI76_RS09705 at 2035.080 kb on + strand, within BWI76_RS09705 at 2035.382 kb on + strand, within BWI76_RS09705 at 2035.448 kb on + strand at 2035.605 kb on + strand, within BWI76_RS09710 at 2035.965 kb on + strand, within BWI76_RS09710 at 2036.065 kb on + strand, within BWI76_RS09710 at 2036.263 kb on - strand at 2036.407 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 2,033,644 + BWI76_RS09695 0.65 -0.8 2,033,706 + BWI76_RS09695 0.70 +0.7 2,033,714 - BWI76_RS09695 0.71 +0.1 2,033,887 + BWI76_RS09695 0.86 -0.1 2,034,049 - +0.2 2,034,370 - BWI76_RS09700 0.64 +0.3 2,034,588 - +0.5 2,034,588 - +0.3 2,034,774 + BWI76_RS09705 0.22 -1.4 2,035,011 + BWI76_RS09705 0.48 +1.5 2,035,019 - BWI76_RS09705 0.49 +0.3 2,035,019 - BWI76_RS09705 0.49 +0.3 2,035,080 + BWI76_RS09705 0.56 +1.1 2,035,382 + BWI76_RS09705 0.89 +1.2 2,035,448 + -0.9 2,035,605 + BWI76_RS09710 0.16 +0.6 2,035,965 + BWI76_RS09710 0.61 +1.3 2,036,065 + BWI76_RS09710 0.73 -0.6 2,036,263 - -0.6 2,036,407 + -0.2
Or see this region's nucleotide sequence