Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09155 and BWI76_RS09160 are separated by 318 nucleotides BWI76_RS09160 and BWI76_RS09165 are separated by 47 nucleotides BWI76_RS09165 and BWI76_RS09170 overlap by 1 nucleotides
BWI76_RS09155: BWI76_RS09155 - undecaprenyl-diphosphatase, at 1,934,075 to 1,934,668
_RS09155
BWI76_RS09160: BWI76_RS09160 - multidrug transporter MdfA, at 1,934,987 to 1,936,222
_RS09160
BWI76_RS09165: BWI76_RS09165 - phosphatase YbjI, at 1,936,270 to 1,937,085
_RS09165
BWI76_RS09170: BWI76_RS09170 - MFS transporter, at 1,937,085 to 1,938,287
_RS09170
Position (kb) 1934
1935
1936
1937 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1934.328 kb on - strand, within BWI76_RS09155 at 1934.407 kb on - strand, within BWI76_RS09155 at 1934.407 kb on - strand, within BWI76_RS09155 at 1934.410 kb on + strand, within BWI76_RS09155 at 1934.523 kb on + strand, within BWI76_RS09155 at 1934.625 kb on + strand at 1934.625 kb on + strand at 1934.625 kb on + strand at 1934.625 kb on + strand at 1934.625 kb on + strand at 1934.625 kb on + strand at 1934.633 kb on - strand at 1934.633 kb on - strand at 1934.633 kb on - strand at 1934.633 kb on - strand at 1934.678 kb on - strand at 1934.697 kb on - strand at 1934.737 kb on - strand at 1934.737 kb on - strand at 1934.801 kb on + strand at 1934.803 kb on + strand at 1934.819 kb on + strand at 1934.819 kb on + strand at 1934.891 kb on - strand at 1934.892 kb on - strand at 1934.920 kb on + strand at 1934.955 kb on - strand at 1934.964 kb on + strand at 1935.016 kb on + strand at 1935.016 kb on + strand at 1935.016 kb on + strand at 1935.022 kb on + strand at 1935.024 kb on - strand at 1935.024 kb on - strand at 1935.037 kb on - strand at 1935.042 kb on - strand at 1935.053 kb on + strand at 1935.087 kb on + strand at 1935.109 kb on - strand at 1935.149 kb on - strand, within BWI76_RS09160 at 1935.244 kb on + strand, within BWI76_RS09160 at 1935.244 kb on + strand, within BWI76_RS09160 at 1935.331 kb on + strand, within BWI76_RS09160 at 1935.341 kb on - strand, within BWI76_RS09160 at 1935.341 kb on - strand, within BWI76_RS09160 at 1935.394 kb on + strand, within BWI76_RS09160 at 1936.073 kb on - strand, within BWI76_RS09160 at 1936.299 kb on - strand at 1936.360 kb on + strand, within BWI76_RS09165 at 1936.463 kb on - strand, within BWI76_RS09165 at 1936.472 kb on + strand, within BWI76_RS09165 at 1936.479 kb on - strand, within BWI76_RS09165 at 1936.535 kb on + strand at 1936.543 kb on - strand, within BWI76_RS09165 at 1936.922 kb on - strand, within BWI76_RS09165 at 1937.081 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 1,934,328 - BWI76_RS09155 0.43 -1.4 1,934,407 - BWI76_RS09155 0.56 -1.0 1,934,407 - BWI76_RS09155 0.56 +0.1 1,934,410 + BWI76_RS09155 0.56 -0.6 1,934,523 + BWI76_RS09155 0.75 -0.3 1,934,625 + -0.4 1,934,625 + -0.2 1,934,625 + +0.0 1,934,625 + -1.0 1,934,625 + +0.7 1,934,625 + +0.5 1,934,633 - -0.0 1,934,633 - +0.2 1,934,633 - -1.9 1,934,633 - -1.4 1,934,678 - -0.8 1,934,697 - -0.4 1,934,737 - -0.7 1,934,737 - +0.2 1,934,801 + +0.7 1,934,803 + -1.2 1,934,819 + -2.8 1,934,819 + -1.4 1,934,891 - +1.0 1,934,892 - +1.2 1,934,920 + +2.0 1,934,955 - +1.3 1,934,964 + +0.0 1,935,016 + +2.8 1,935,016 + +0.3 1,935,016 + +0.3 1,935,022 + +1.4 1,935,024 - +1.8 1,935,024 - +1.0 1,935,037 - +0.8 1,935,042 - +0.8 1,935,053 + +0.9 1,935,087 + +1.1 1,935,109 - +1.2 1,935,149 - BWI76_RS09160 0.13 +1.0 1,935,244 + BWI76_RS09160 0.21 +1.5 1,935,244 + BWI76_RS09160 0.21 +1.1 1,935,331 + BWI76_RS09160 0.28 +0.9 1,935,341 - BWI76_RS09160 0.29 +1.5 1,935,341 - BWI76_RS09160 0.29 +1.1 1,935,394 + BWI76_RS09160 0.33 +1.1 1,936,073 - BWI76_RS09160 0.88 +0.6 1,936,299 - -0.6 1,936,360 + BWI76_RS09165 0.11 -0.5 1,936,463 - BWI76_RS09165 0.24 -2.0 1,936,472 + BWI76_RS09165 0.25 +0.4 1,936,479 - BWI76_RS09165 0.26 +0.6 1,936,535 + +2.5 1,936,543 - BWI76_RS09165 0.33 +0.3 1,936,922 - BWI76_RS09165 0.80 -0.4 1,937,081 - -2.0
Or see this region's nucleotide sequence