Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07960 and BWI76_RS07965 are separated by 92 nucleotides BWI76_RS07965 and BWI76_RS07970 are separated by 71 nucleotides BWI76_RS07970 and BWI76_RS07975 are separated by 43 nucleotides
BWI76_RS07960: BWI76_RS07960 - ribonuclease I, at 1,690,817 to 1,691,611
_RS07960
BWI76_RS07965: BWI76_RS07965 - anaerobic C4-dicarboxylate transporter DcuC, at 1,691,704 to 1,693,077
_RS07965
BWI76_RS07970: BWI76_RS07970 - hypothetical protein, at 1,693,149 to 1,693,329
_RS07970
BWI76_RS07975: BWI76_RS07975 - phospholipid:lipid A palmitoyltransferase, at 1,693,373 to 1,693,942
_RS07975
Position (kb)
1691
1692
1693
1694 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1691.003 kb on - strand, within BWI76_RS07960 at 1691.024 kb on - strand, within BWI76_RS07960 at 1691.291 kb on + strand, within BWI76_RS07960 at 1691.296 kb on + strand, within BWI76_RS07960 at 1691.438 kb on - strand, within BWI76_RS07960 at 1691.558 kb on + strand at 1691.625 kb on + strand at 1691.703 kb on - strand at 1691.772 kb on - strand at 1691.839 kb on - strand at 1691.957 kb on + strand, within BWI76_RS07965 at 1692.092 kb on - strand, within BWI76_RS07965 at 1692.105 kb on + strand, within BWI76_RS07965 at 1692.351 kb on + strand, within BWI76_RS07965 at 1692.662 kb on - strand, within BWI76_RS07965 at 1692.913 kb on - strand, within BWI76_RS07965 at 1692.961 kb on + strand at 1692.961 kb on + strand at 1692.969 kb on - strand at 1693.102 kb on + strand at 1693.217 kb on + strand, within BWI76_RS07970 at 1693.225 kb on - strand, within BWI76_RS07970 at 1693.278 kb on + strand, within BWI76_RS07970 at 1693.278 kb on + strand, within BWI76_RS07970 at 1693.428 kb on - strand at 1693.554 kb on - strand, within BWI76_RS07975 at 1693.554 kb on - strand, within BWI76_RS07975 at 1693.668 kb on - strand, within BWI76_RS07975 at 1693.703 kb on - strand, within BWI76_RS07975 at 1693.729 kb on + strand, within BWI76_RS07975 at 1693.729 kb on + strand, within BWI76_RS07975 at 1693.886 kb on - strand at 1693.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 1,691,003 - BWI76_RS07960 0.23 -1.5 1,691,024 - BWI76_RS07960 0.26 +0.1 1,691,291 + BWI76_RS07960 0.60 -1.0 1,691,296 + BWI76_RS07960 0.60 -0.8 1,691,438 - BWI76_RS07960 0.78 -0.5 1,691,558 + -0.2 1,691,625 + +1.9 1,691,703 - +0.8 1,691,772 - +0.6 1,691,839 - +0.5 1,691,957 + BWI76_RS07965 0.18 +0.7 1,692,092 - BWI76_RS07965 0.28 +0.5 1,692,105 + BWI76_RS07965 0.29 +3.3 1,692,351 + BWI76_RS07965 0.47 -1.4 1,692,662 - BWI76_RS07965 0.70 +0.3 1,692,913 - BWI76_RS07965 0.88 -0.4 1,692,961 + +1.2 1,692,961 + +0.8 1,692,969 - +0.6 1,693,102 + -0.0 1,693,217 + BWI76_RS07970 0.38 -2.5 1,693,225 - BWI76_RS07970 0.42 +0.0 1,693,278 + BWI76_RS07970 0.71 -0.8 1,693,278 + BWI76_RS07970 0.71 -0.6 1,693,428 - -1.2 1,693,554 - BWI76_RS07975 0.32 -2.5 1,693,554 - BWI76_RS07975 0.32 +0.0 1,693,668 - BWI76_RS07975 0.52 -1.1 1,693,703 - BWI76_RS07975 0.58 -1.8 1,693,729 + BWI76_RS07975 0.62 -0.1 1,693,729 + BWI76_RS07975 0.62 -0.2 1,693,886 - +0.1 1,693,917 - +1.1
Or see this region's nucleotide sequence