Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07950

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07945 and BWI76_RS07950 are separated by 77 nucleotidesBWI76_RS07950 and BWI76_RS07955 are separated by 199 nucleotidesBWI76_RS07955 and BWI76_RS07960 are separated by 155 nucleotides BWI76_RS07945: BWI76_RS07945 - alkyl hydroperoxide reductase subunit F, at 1,687,980 to 1,689,545 _RS07945 BWI76_RS07950: BWI76_RS07950 - universal stress protein G, at 1,689,623 to 1,690,051 _RS07950 BWI76_RS07955: BWI76_RS07955 - nucleoside diphosphate kinase regulator, at 1,690,251 to 1,690,661 _RS07955 BWI76_RS07960: BWI76_RS07960 - ribonuclease I, at 1,690,817 to 1,691,611 _RS07960 Position (kb) 1689 1690 1691Strain fitness (log2 ratio) -3 -2 -1 0 1at 1688.671 kb on - strand, within BWI76_RS07945at 1688.732 kb on - strand, within BWI76_RS07945at 1688.856 kb on - strand, within BWI76_RS07945at 1689.177 kb on - strand, within BWI76_RS07945at 1689.205 kb on + strand, within BWI76_RS07945at 1689.555 kb on + strandat 1689.576 kb on + strandat 1689.576 kb on + strandat 1689.584 kb on - strandat 1689.596 kb on - strandat 1689.596 kb on - strandat 1689.667 kb on - strand, within BWI76_RS07950at 1689.791 kb on - strand, within BWI76_RS07950at 1689.882 kb on - strand, within BWI76_RS07950at 1689.882 kb on - strand, within BWI76_RS07950at 1689.937 kb on - strand, within BWI76_RS07950at 1690.194 kb on - strandat 1690.363 kb on - strand, within BWI76_RS07955at 1690.482 kb on + strand, within BWI76_RS07955at 1691.003 kb on - strand, within BWI76_RS07960at 1691.024 kb on - strand, within BWI76_RS07960

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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1,688,671 - BWI76_RS07945 0.44 -1.4
1,688,732 - BWI76_RS07945 0.48 -1.5
1,688,856 - BWI76_RS07945 0.56 -3.4
1,689,177 - BWI76_RS07945 0.76 +1.6
1,689,205 + BWI76_RS07945 0.78 +0.9
1,689,555 + +0.0
1,689,576 + -1.1
1,689,576 + +0.0
1,689,584 - -1.8
1,689,596 - -1.1
1,689,596 - -1.1
1,689,667 - BWI76_RS07950 0.10 +0.3
1,689,791 - BWI76_RS07950 0.39 -0.5
1,689,882 - BWI76_RS07950 0.60 -0.4
1,689,882 - BWI76_RS07950 0.60 -0.7
1,689,937 - BWI76_RS07950 0.73 +1.0
1,690,194 - +0.0
1,690,363 - BWI76_RS07955 0.27 +0.9
1,690,482 + BWI76_RS07955 0.56 -1.4
1,691,003 - BWI76_RS07960 0.23 -1.5
1,691,024 - BWI76_RS07960 0.26 +0.1

Or see this region's nucleotide sequence