Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04130 and BWI76_RS04135 are separated by 77 nucleotides BWI76_RS04135 and BWI76_RS04140 are separated by 52 nucleotides
BWI76_RS04130: BWI76_RS04130 - 2-deoxyribose-5-phosphate aldolase, at 849,568 to 850,347
_RS04130
BWI76_RS04135: BWI76_RS04135 - thymidine phosphorylase, at 850,425 to 851,747
_RS04135
BWI76_RS04140: BWI76_RS04140 - phosphopentomutase, at 851,800 to 853,023
_RS04140
Position (kb) 850
851
852 Strain fitness (log2 ratio) -1
0
1 at 849.483 kb on - strand at 849.607 kb on - strand at 849.727 kb on - strand, within BWI76_RS04130 at 849.761 kb on + strand, within BWI76_RS04130 at 849.776 kb on + strand, within BWI76_RS04130 at 849.828 kb on + strand, within BWI76_RS04130 at 849.870 kb on - strand, within BWI76_RS04130 at 849.928 kb on - strand, within BWI76_RS04130 at 849.933 kb on - strand, within BWI76_RS04130 at 850.241 kb on - strand, within BWI76_RS04130 at 850.396 kb on + strand at 850.652 kb on - strand, within BWI76_RS04135 at 850.836 kb on + strand, within BWI76_RS04135 at 851.062 kb on + strand, within BWI76_RS04135 at 851.062 kb on + strand, within BWI76_RS04135 at 851.077 kb on - strand, within BWI76_RS04135 at 851.136 kb on + strand at 851.331 kb on + strand, within BWI76_RS04135 at 851.339 kb on - strand, within BWI76_RS04135 at 851.339 kb on - strand, within BWI76_RS04135 at 851.661 kb on - strand at 851.663 kb on + strand at 851.752 kb on + strand at 851.755 kb on - strand at 851.760 kb on - strand at 851.896 kb on - strand at 851.972 kb on + strand, within BWI76_RS04140 at 851.980 kb on - strand, within BWI76_RS04140 at 851.990 kb on - strand, within BWI76_RS04140 at 852.095 kb on + strand, within BWI76_RS04140 at 852.195 kb on + strand, within BWI76_RS04140 at 852.378 kb on + strand, within BWI76_RS04140 at 852.585 kb on + strand, within BWI76_RS04140
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 849,483 - -0.0 849,607 - -0.2 849,727 - BWI76_RS04130 0.20 +0.3 849,761 + BWI76_RS04130 0.25 +0.8 849,776 + BWI76_RS04130 0.27 -0.2 849,828 + BWI76_RS04130 0.33 +0.7 849,870 - BWI76_RS04130 0.39 +0.6 849,928 - BWI76_RS04130 0.46 +0.6 849,933 - BWI76_RS04130 0.47 -1.5 850,241 - BWI76_RS04130 0.86 -1.1 850,396 + +0.5 850,652 - BWI76_RS04135 0.17 -1.0 850,836 + BWI76_RS04135 0.31 -0.6 851,062 + BWI76_RS04135 0.48 -1.1 851,062 + BWI76_RS04135 0.48 -1.2 851,077 - BWI76_RS04135 0.49 +0.6 851,136 + +0.7 851,331 + BWI76_RS04135 0.68 -0.6 851,339 - BWI76_RS04135 0.69 -0.8 851,339 - BWI76_RS04135 0.69 -1.4 851,661 - -0.6 851,663 + -1.0 851,752 + +0.3 851,755 - -0.4 851,760 - +0.6 851,896 - +0.3 851,972 + BWI76_RS04140 0.14 +0.3 851,980 - BWI76_RS04140 0.15 +0.3 851,990 - BWI76_RS04140 0.16 +0.8 852,095 + BWI76_RS04140 0.24 +0.5 852,195 + BWI76_RS04140 0.32 +0.8 852,378 + BWI76_RS04140 0.47 +0.5 852,585 + BWI76_RS04140 0.64 +1.5
Or see this region's nucleotide sequence