Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4852

Experiment: Fumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4851 and Psyr_4852 are separated by 136 nucleotidesPsyr_4852 and Psyr_4853 are separated by 348 nucleotidesPsyr_4853 and Psyr_4854 are separated by 138 nucleotides Psyr_4851: Psyr_4851 - FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal, at 5,757,572 to 5,758,990 _4851 Psyr_4852: Psyr_4852 - D-3-phosphoglycerate dehydrogenase, at 5,759,127 to 5,760,356 _4852 Psyr_4853: Psyr_4853 - conserved hypothetical protein, at 5,760,705 to 5,761,142 _4853 Psyr_4854: Psyr_4854 - 2OG-Fe(II) oxygenase superfamily, at 5,761,281 to 5,761,982 _4854 Position (kb) 5759 5760 5761Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5758.133 kb on + strand, within Psyr_4851at 5758.133 kb on + strand, within Psyr_4851at 5758.133 kb on + strand, within Psyr_4851at 5758.133 kb on + strand, within Psyr_4851at 5758.133 kb on + strand, within Psyr_4851at 5758.133 kb on + strand, within Psyr_4851at 5758.134 kb on - strand, within Psyr_4851at 5758.134 kb on - strand, within Psyr_4851at 5758.134 kb on - strand, within Psyr_4851at 5758.134 kb on - strand, within Psyr_4851at 5758.134 kb on - strand, within Psyr_4851at 5758.134 kb on - strand, within Psyr_4851at 5758.134 kb on - strand, within Psyr_4851at 5758.137 kb on + strand, within Psyr_4851at 5758.137 kb on + strand, within Psyr_4851at 5758.137 kb on + strand, within Psyr_4851at 5758.137 kb on + strand, within Psyr_4851at 5758.137 kb on + strand, within Psyr_4851at 5758.137 kb on + strand, within Psyr_4851at 5758.137 kb on + strand, within Psyr_4851at 5758.137 kb on + strand, within Psyr_4851at 5758.138 kb on - strand, within Psyr_4851at 5758.138 kb on - strand, within Psyr_4851at 5758.138 kb on - strand, within Psyr_4851at 5758.138 kb on - strand, within Psyr_4851at 5758.138 kb on - strand, within Psyr_4851at 5758.138 kb on - strand, within Psyr_4851at 5758.138 kb on - strand, within Psyr_4851at 5758.364 kb on - strand, within Psyr_4851at 5758.584 kb on + strand, within Psyr_4851at 5758.584 kb on + strand, within Psyr_4851at 5758.689 kb on + strand, within Psyr_4851at 5758.689 kb on + strand, within Psyr_4851at 5758.689 kb on + strand, within Psyr_4851at 5758.690 kb on - strand, within Psyr_4851at 5758.832 kb on + strand, within Psyr_4851at 5758.832 kb on + strand, within Psyr_4851at 5758.881 kb on + strandat 5758.881 kb on + strandat 5758.882 kb on - strandat 5758.910 kb on + strandat 5758.911 kb on - strandat 5758.911 kb on - strandat 5758.911 kb on - strandat 5758.911 kb on - strandat 5759.040 kb on + strandat 5759.040 kb on + strandat 5759.040 kb on + strandat 5759.040 kb on + strandat 5759.040 kb on + strandat 5759.040 kb on + strandat 5759.040 kb on + strandat 5759.040 kb on + strandat 5759.040 kb on + strandat 5759.041 kb on - strandat 5759.041 kb on - strandat 5759.041 kb on - strandat 5759.041 kb on - strandat 5759.041 kb on - strandat 5759.041 kb on - strandat 5759.041 kb on - strandat 5759.041 kb on - strandat 5759.045 kb on + strandat 5759.045 kb on + strandat 5759.045 kb on + strandat 5759.046 kb on - strandat 5759.046 kb on - strandat 5759.046 kb on - strandat 5759.050 kb on + strandat 5759.051 kb on - strandat 5759.051 kb on - strandat 5759.602 kb on - strand, within Psyr_4852at 5759.658 kb on + strand, within Psyr_4852at 5759.658 kb on + strand, within Psyr_4852at 5759.658 kb on + strand, within Psyr_4852at 5759.658 kb on + strand, within Psyr_4852at 5759.658 kb on + strand, within Psyr_4852at 5759.658 kb on + strand, within Psyr_4852at 5759.658 kb on + strand, within Psyr_4852at 5759.659 kb on - strand, within Psyr_4852at 5759.659 kb on - strand, within Psyr_4852at 5759.659 kb on - strand, within Psyr_4852at 5759.659 kb on - strand, within Psyr_4852at 5759.659 kb on - strand, within Psyr_4852at 5759.659 kb on - strand, within Psyr_4852at 5759.659 kb on - strand, within Psyr_4852at 5759.659 kb on - strand, within Psyr_4852at 5759.664 kb on + strand, within Psyr_4852at 5759.664 kb on + strand, within Psyr_4852at 5759.665 kb on - strand, within Psyr_4852at 5759.665 kb on - strand, within Psyr_4852at 5759.665 kb on - strand, within Psyr_4852at 5759.665 kb on - strand, within Psyr_4852at 5759.665 kb on - strand, within Psyr_4852at 5759.665 kb on - strand, within Psyr_4852at 5759.665 kb on - strand, within Psyr_4852at 5760.069 kb on + strand, within Psyr_4852at 5760.069 kb on + strand, within Psyr_4852at 5760.070 kb on - strand, within Psyr_4852at 5760.070 kb on - strand, within Psyr_4852at 5760.083 kb on + strand, within Psyr_4852at 5760.083 kb on + strand, within Psyr_4852at 5760.084 kb on - strand, within Psyr_4852at 5760.262 kb on - strandat 5760.410 kb on + strandat 5760.513 kb on + strandat 5760.513 kb on + strandat 5760.706 kb on + strandat 5760.707 kb on - strandat 5761.030 kb on + strand, within Psyr_4853at 5761.030 kb on + strand, within Psyr_4853at 5761.030 kb on + strand, within Psyr_4853at 5761.030 kb on + strand, within Psyr_4853at 5761.030 kb on + strand, within Psyr_4853at 5761.030 kb on + strand, within Psyr_4853at 5761.030 kb on + strand, within Psyr_4853at 5761.030 kb on + strand, within Psyr_4853at 5761.030 kb on + strand, within Psyr_4853at 5761.030 kb on + strand, within Psyr_4853at 5761.030 kb on + strand, within Psyr_4853at 5761.030 kb on + strand, within Psyr_4853at 5761.030 kb on + strand, within Psyr_4853at 5761.031 kb on - strand, within Psyr_4853at 5761.031 kb on - strand, within Psyr_4853at 5761.031 kb on - strand, within Psyr_4853at 5761.031 kb on - strand, within Psyr_4853at 5761.031 kb on - strand, within Psyr_4853at 5761.065 kb on + strand, within Psyr_4853at 5761.065 kb on + strand, within Psyr_4853at 5761.065 kb on + strand, within Psyr_4853at 5761.065 kb on + strand, within Psyr_4853at 5761.066 kb on - strand, within Psyr_4853at 5761.066 kb on - strand, within Psyr_4853at 5761.066 kb on - strand, within Psyr_4853at 5761.066 kb on - strand, within Psyr_4853at 5761.066 kb on - strand, within Psyr_4853at 5761.166 kb on + strandat 5761.167 kb on - strandat 5761.167 kb on - strandat 5761.167 kb on - strandat 5761.214 kb on + strandat 5761.215 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumaric (C)
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5,758,133 + Psyr_4851 0.40 -0.1
5,758,133 + Psyr_4851 0.40 -0.2
5,758,133 + Psyr_4851 0.40 +0.4
5,758,133 + Psyr_4851 0.40 -0.3
5,758,133 + Psyr_4851 0.40 -1.1
5,758,133 + Psyr_4851 0.40 +0.4
5,758,134 - Psyr_4851 0.40 +0.3
5,758,134 - Psyr_4851 0.40 +0.3
5,758,134 - Psyr_4851 0.40 +0.6
5,758,134 - Psyr_4851 0.40 -2.4
5,758,134 - Psyr_4851 0.40 +0.8
5,758,134 - Psyr_4851 0.40 +0.4
5,758,134 - Psyr_4851 0.40 -2.2
5,758,137 + Psyr_4851 0.40 +0.1
5,758,137 + Psyr_4851 0.40 +0.0
5,758,137 + Psyr_4851 0.40 -1.1
5,758,137 + Psyr_4851 0.40 +0.1
5,758,137 + Psyr_4851 0.40 -1.6
5,758,137 + Psyr_4851 0.40 -1.0
5,758,137 + Psyr_4851 0.40 -1.2
5,758,137 + Psyr_4851 0.40 -1.6
5,758,138 - Psyr_4851 0.40 +0.4
5,758,138 - Psyr_4851 0.40 +0.8
5,758,138 - Psyr_4851 0.40 +1.6
5,758,138 - Psyr_4851 0.40 +0.6
5,758,138 - Psyr_4851 0.40 -0.6
5,758,138 - Psyr_4851 0.40 +1.1
5,758,138 - Psyr_4851 0.40 -1.2
5,758,364 - Psyr_4851 0.56 +2.4
5,758,584 + Psyr_4851 0.71 -2.0
5,758,584 + Psyr_4851 0.71 +1.5
5,758,689 + Psyr_4851 0.79 +0.2
5,758,689 + Psyr_4851 0.79 -2.6
5,758,689 + Psyr_4851 0.79 +0.4
5,758,690 - Psyr_4851 0.79 -0.4
5,758,832 + Psyr_4851 0.89 -0.2
5,758,832 + Psyr_4851 0.89 -0.7
5,758,881 + +0.4
5,758,881 + -1.2
5,758,882 - -0.6
5,758,910 + -0.4
5,758,911 - -0.2
5,758,911 - -2.6
5,758,911 - -0.4
5,758,911 - -2.0
5,759,040 + -0.4
5,759,040 + +3.4
5,759,040 + +0.4
5,759,040 + -1.4
5,759,040 + +0.6
5,759,040 + -0.6
5,759,040 + -1.2
5,759,040 + -0.6
5,759,040 + -0.2
5,759,041 - -1.6
5,759,041 - -1.1
5,759,041 - -0.7
5,759,041 - -0.2
5,759,041 - +1.2
5,759,041 - +0.4
5,759,041 - -0.1
5,759,041 - +0.4
5,759,045 + +0.6
5,759,045 + +0.2
5,759,045 + -1.2
5,759,046 - -2.0
5,759,046 - -2.2
5,759,046 - -2.0
5,759,050 + -1.0
5,759,051 - -2.2
5,759,051 - -2.5
5,759,602 - Psyr_4852 0.39 -0.6
5,759,658 + Psyr_4852 0.43 -2.6
5,759,658 + Psyr_4852 0.43 -2.4
5,759,658 + Psyr_4852 0.43 -2.4
5,759,658 + Psyr_4852 0.43 -2.0
5,759,658 + Psyr_4852 0.43 -3.8
5,759,658 + Psyr_4852 0.43 +0.4
5,759,658 + Psyr_4852 0.43 -1.6
5,759,659 - Psyr_4852 0.43 -2.0
5,759,659 - Psyr_4852 0.43 -0.5
5,759,659 - Psyr_4852 0.43 +0.4
5,759,659 - Psyr_4852 0.43 -2.2
5,759,659 - Psyr_4852 0.43 -2.0
5,759,659 - Psyr_4852 0.43 -3.7
5,759,659 - Psyr_4852 0.43 -2.6
5,759,659 - Psyr_4852 0.43 -3.5
5,759,664 + Psyr_4852 0.44 +0.4
5,759,664 + Psyr_4852 0.44 -3.5
5,759,665 - Psyr_4852 0.44 -1.0
5,759,665 - Psyr_4852 0.44 -3.9
5,759,665 - Psyr_4852 0.44 -2.5
5,759,665 - Psyr_4852 0.44 -3.3
5,759,665 - Psyr_4852 0.44 -4.3
5,759,665 - Psyr_4852 0.44 +0.4
5,759,665 - Psyr_4852 0.44 -2.2
5,760,069 + Psyr_4852 0.77 -1.6
5,760,069 + Psyr_4852 0.77 -4.0
5,760,070 - Psyr_4852 0.77 -2.4
5,760,070 - Psyr_4852 0.77 +1.4
5,760,083 + Psyr_4852 0.78 -2.3
5,760,083 + Psyr_4852 0.78 -1.3
5,760,084 - Psyr_4852 0.78 -2.8
5,760,262 - -3.3
5,760,410 + -1.2
5,760,513 + +0.6
5,760,513 + -2.0
5,760,706 + -0.6
5,760,707 - +0.4
5,761,030 + Psyr_4853 0.74 +0.4
5,761,030 + Psyr_4853 0.74 -0.4
5,761,030 + Psyr_4853 0.74 +1.1
5,761,030 + Psyr_4853 0.74 +0.4
5,761,030 + Psyr_4853 0.74 +0.5
5,761,030 + Psyr_4853 0.74 -0.7
5,761,030 + Psyr_4853 0.74 +0.2
5,761,030 + Psyr_4853 0.74 +0.9
5,761,030 + Psyr_4853 0.74 +1.2
5,761,030 + Psyr_4853 0.74 -0.0
5,761,030 + Psyr_4853 0.74 +2.6
5,761,030 + Psyr_4853 0.74 +0.2
5,761,030 + Psyr_4853 0.74 -0.2
5,761,031 - Psyr_4853 0.74 -1.0
5,761,031 - Psyr_4853 0.74 -0.2
5,761,031 - Psyr_4853 0.74 +0.4
5,761,031 - Psyr_4853 0.74 +1.1
5,761,031 - Psyr_4853 0.74 -0.6
5,761,065 + Psyr_4853 0.82 +0.0
5,761,065 + Psyr_4853 0.82 +0.1
5,761,065 + Psyr_4853 0.82 +2.9
5,761,065 + Psyr_4853 0.82 -1.2
5,761,066 - Psyr_4853 0.82 -0.5
5,761,066 - Psyr_4853 0.82 -0.1
5,761,066 - Psyr_4853 0.82 +1.4
5,761,066 - Psyr_4853 0.82 -1.5
5,761,066 - Psyr_4853 0.82 +0.5
5,761,166 + -0.6
5,761,167 - -0.9
5,761,167 - -1.1
5,761,167 - -3.1
5,761,214 + +0.0
5,761,215 - -0.4

Or see this region's nucleotide sequence