Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4631

Experiment: Fumaric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fumaric (C)
5,489,752	-				-0.9
5,489,855	+				+1.3
5,489,855	+				+2.1
5,490,008	+		Psyr_4630	0.53	-0.2
5,490,063	+		Psyr_4630	0.70	+0.4
5,490,063	+		Psyr_4630	0.70	-1.5
5,490,064	-		Psyr_4630	0.70	-0.7
5,490,093	+		Psyr_4630	0.79	-0.7
5,490,093	+		Psyr_4630	0.79	-1.9
5,490,093	+		Psyr_4630	0.79	+0.3
5,490,093	+		Psyr_4630	0.79	+0.3
5,490,094	-		Psyr_4630	0.80	+0.7
5,490,094	-		Psyr_4630	0.80	-1.0
5,490,094	-		Psyr_4630	0.80	-1.3
5,490,094	-		Psyr_4630	0.80	-0.3
5,490,094	-		Psyr_4630	0.80	-1.3
5,490,094	-		Psyr_4630	0.80	-1.4
5,490,094	-		Psyr_4630	0.80	+2.8
5,490,160	-				-0.7
5,490,172	+				+1.4
5,490,173	-				+0.9
5,490,194	+				+2.3
5,490,194	+				-0.1
5,490,195	-				-1.7
5,490,195	-				-0.1
5,490,273	+				-0.4
5,490,273	+				-0.3
5,490,273	+				-0.7
5,490,273	+				-0.0
5,490,273	+				+1.6
5,490,274	-				+3.3
5,490,274	-				+0.2
5,490,274	-				-1.0
5,490,274	-				+1.7
5,490,279	+				-2.6
5,490,336	+				-0.5
5,490,337	-				+1.1
5,490,340	+				+0.1
5,490,340	+				-0.7
5,490,341	-				-0.1
5,490,341	-				-1.4
5,490,346	+				+0.5
5,490,347	-				-0.0
5,490,347	-				-1.7
5,490,375	+				+0.3
5,490,376	-				-1.3
5,490,376	-				+0.5
5,490,376	-				-0.5
5,490,378	+				-0.4
5,490,378	+				+0.7
5,490,379	-				-0.5
5,490,379	-				-0.4
5,490,379	-				-0.7
5,490,379	-				-0.7
5,490,381	+				-1.3
5,490,381	+				+0.5
5,490,381	+				+0.3
5,490,382	-				-0.2
5,490,382	-				-0.3
5,490,451	+				-1.0
5,490,451	+				+0.3
5,490,451	+				+1.4
5,490,451	+				-1.6
5,490,451	+				+1.3
5,490,451	+				-0.5
5,490,451	+				+0.6
5,490,451	+				+0.5
5,490,451	+				-2.3
5,490,451	+				-1.3
5,490,451	+				+2.0
5,490,451	+				-1.6
5,490,451	+				-0.3
5,490,451	+				+1.5
5,490,452	-				-0.3
5,490,452	-				-0.2
5,490,452	-				-0.7
5,490,452	-				+1.4
5,490,452	-				+0.8
5,490,453	+				+2.6
5,490,453	+				-1.9
5,490,453	+				-0.3
5,490,453	+				-0.6
5,490,454	-				-1.3
5,490,454	-				-2.2
5,490,454	-				-1.1
5,490,454	-				-0.6
5,490,515	+				-0.1
5,490,515	+				-0.6
5,490,515	+				+0.3
5,490,515	+				-0.4
5,490,515	+				-0.2
5,490,515	+				-0.7
5,490,516	-				-0.2
5,490,516	-				-0.5
5,490,548	+				+0.6
5,490,549	-				-0.2
5,490,605	-				-1.6
5,490,651	+		Psyr_4631	0.11	-1.0
5,490,651	+		Psyr_4631	0.11	+0.3
5,490,717	-		Psyr_4631	0.14	-3.1
5,490,717	-		Psyr_4631	0.14	-0.1
5,490,764	+		Psyr_4631	0.17	-0.6
5,490,764	+		Psyr_4631	0.17	-0.0
5,490,764	+		Psyr_4631	0.17	-1.9
5,490,764	+		Psyr_4631	0.17	-1.0
5,490,764	+		Psyr_4631	0.17	+0.4
5,490,765	-		Psyr_4631	0.17	-1.5
5,490,765	-		Psyr_4631	0.17	+1.4
5,490,765	-		Psyr_4631	0.17	+0.0
5,490,843	-		Psyr_4631	0.21	+0.8
5,490,843	-		Psyr_4631	0.21	-1.7
5,490,843	-		Psyr_4631	0.21	-1.7
5,490,843	-		Psyr_4631	0.21	-1.2
5,490,944	+		Psyr_4631	0.26	-0.7
5,491,032	-		Psyr_4631	0.30	-0.1
5,491,166	+		Psyr_4631	0.37	-1.1
5,491,172	+		Psyr_4631	0.38	+0.7
5,491,172	+		Psyr_4631	0.38	-0.2
5,491,172	+		Psyr_4631	0.38	-1.3
5,491,173	-		Psyr_4631	0.38	-1.7
5,491,173	-		Psyr_4631	0.38	+0.9
5,491,283	+		Psyr_4631	0.44	+2.3
5,491,283	+		Psyr_4631	0.44	+0.5
5,491,283	+		Psyr_4631	0.44	-1.7
5,491,283	+		Psyr_4631	0.44	-1.2
5,491,283	+		Psyr_4631	0.44	-0.7
5,491,283	+		Psyr_4631	0.44	-0.3
5,491,283	+		Psyr_4631	0.44	-0.4
5,491,283	+		Psyr_4631	0.44	-0.6
5,491,283	+		Psyr_4631	0.44	-1.7
5,491,283	+		Psyr_4631	0.44	+0.3
5,491,283	+		Psyr_4631	0.44	+0.1
5,491,283	+		Psyr_4631	0.44	-0.7
5,491,284	-		Psyr_4631	0.44	+1.3
5,491,284	-		Psyr_4631	0.44	+0.8
5,491,284	-		Psyr_4631	0.44	+0.7
5,491,284	-		Psyr_4631	0.44	-2.6
5,491,284	-		Psyr_4631	0.44	+0.3
5,491,284	-		Psyr_4631	0.44	+0.6
5,491,284	-		Psyr_4631	0.44	-1.1
5,491,284	-		Psyr_4631	0.44	+1.1
5,491,284	-		Psyr_4631	0.44	-0.3
5,491,284	-		Psyr_4631	0.44	+0.0
5,491,402	+		Psyr_4631	0.50	+1.1
5,491,402	+		Psyr_4631	0.50	+0.3
5,491,403	-		Psyr_4631	0.50	+0.8
5,491,403	-		Psyr_4631	0.50	+0.8
5,491,406	+		Psyr_4631	0.50	-1.5
5,491,406	+		Psyr_4631	0.50	+0.1
5,491,406	+		Psyr_4631	0.50	-0.7
5,491,406	+		Psyr_4631	0.50	+0.5
5,491,406	+		Psyr_4631	0.50	+0.0
5,491,406	+		Psyr_4631	0.50	-1.1
5,491,406	+		Psyr_4631	0.50	+0.3
5,491,406	+		Psyr_4631	0.50	-1.3
5,491,406	+		Psyr_4631	0.50	-1.3
5,491,406	+		Psyr_4631	0.50	+1.0
5,491,407	-		Psyr_4631	0.50	-1.3
5,491,407	-		Psyr_4631	0.50	-0.6
5,491,407	-		Psyr_4631	0.50	-0.0
5,491,457	+		Psyr_4631	0.53	+2.0
5,491,457	+		Psyr_4631	0.53	-0.4
5,491,457	+		Psyr_4631	0.53	+2.8
5,491,458	-		Psyr_4631	0.53	+0.1
5,491,577	+		Psyr_4631	0.59	+0.5
5,491,577	+		Psyr_4631	0.59	-1.1
5,491,578	-		Psyr_4631	0.59	+0.6
5,491,595	+		Psyr_4631	0.60	-0.7
5,491,595	+		Psyr_4631	0.60	-1.5
5,491,596	-		Psyr_4631	0.60	+0.4
5,491,596	-		Psyr_4631	0.60	-0.4
5,491,649	+		Psyr_4631	0.63	-1.7
5,491,775	+		Psyr_4631	0.69	+0.4
5,491,775	+		Psyr_4631	0.69	-0.7
5,491,775	+		Psyr_4631	0.69	-1.7
5,491,775	+		Psyr_4631	0.69	-1.4
5,491,775	+		Psyr_4631	0.69	+0.3
5,491,775	+		Psyr_4631	0.69	-0.5
5,491,776	-		Psyr_4631	0.69	-0.2
5,491,776	-		Psyr_4631	0.69	-2.1
5,491,776	-		Psyr_4631	0.69	+0.1
5,491,832	+		Psyr_4631	0.72	-0.3
5,491,843	+		Psyr_4631	0.73	-1.3
5,491,853	+		Psyr_4631	0.73	+0.7
5,491,853	+		Psyr_4631	0.73	-0.4
5,491,868	+		Psyr_4631	0.74	+0.3
5,491,868	+		Psyr_4631	0.74	-2.1
5,491,869	-		Psyr_4631	0.74	+0.2
5,491,871	-		Psyr_4631	0.74	-1.3
5,491,904	+		Psyr_4631	0.76	-2.1
5,491,916	+		Psyr_4631	0.76	-1.4
5,491,917	-		Psyr_4631	0.76	+0.3
5,491,925	+		Psyr_4631	0.77	-2.1
5,491,949	+		Psyr_4631	0.78	+0.4
5,491,958	+		Psyr_4631	0.79	+0.2
5,491,958	+		Psyr_4631	0.79	-0.6
5,491,958	+		Psyr_4631	0.79	-0.9
5,491,959	-		Psyr_4631	0.79	+0.5
5,491,959	-		Psyr_4631	0.79	+0.3
5,491,959	-		Psyr_4631	0.79	+1.6
5,491,988	+		Psyr_4631	0.80	-0.1
5,492,162	+		Psyr_4631	0.89	-0.7
5,492,162	+		Psyr_4631	0.89	-1.7
5,492,163	-		Psyr_4631	0.89	-0.3
5,492,163	-		Psyr_4631	0.89	+0.8
5,492,163	-		Psyr_4631	0.89	+0.5
5,492,306	+				+0.3
5,492,322	+				-1.0
5,492,322	+				+0.4
5,492,322	+				+0.3
5,492,322	+				+0.3
5,492,322	+				-0.7
5,492,322	+				+0.5
5,492,323	-				-0.1
5,492,323	-				-0.7
5,492,323	-				-2.9
5,492,323	-				+0.4
5,492,323	-				-1.4
5,492,323	-				+1.8
5,492,342	+				-0.2
5,492,342	+				-2.3
5,492,342	+				-1.5
5,492,342	+				+1.3
5,492,343	-				-0.2
5,492,343	-				-0.5
5,492,343	-				-0.4
5,492,389	+				+1.0
5,492,389	+				-3.0
5,492,389	+				-2.1
5,492,389	+				-0.3
5,492,389	+				-0.5
5,492,389	+				-1.0
5,492,390	-				+0.1
5,492,390	-				+0.8
5,492,461	+				-0.6
5,492,461	+				+0.8
5,492,461	+				-1.7
5,492,461	+				+1.4
5,492,462	-				-0.5
5,492,462	-				+1.1
5,492,462	-				+1.3
5,492,462	-				-0.9
5,492,462	-				-0.7
5,492,488	+				+0.7
5,492,489	-				-1.2
5,492,489	-				-0.1
5,492,495	+				+1.4
5,492,495	+				+2.4
5,492,495	+				-0.7
5,492,495	+				-0.7
5,492,495	+				+1.3
5,492,495	+				-1.2
5,492,495	+				-1.0
5,492,495	+				+0.0
5,492,495	+				-0.9
5,492,495	+				-1.9
5,492,495	+				-1.7
5,492,495	+				+0.6
5,492,495	+				-2.4
5,492,495	+				-0.3
5,492,495	+				-0.5
5,492,495	+				+0.9
5,492,496	-				+0.0
5,492,496	-				-0.6
5,492,496	-				-0.7
5,492,496	-				+2.6
5,492,496	-				-0.7
5,492,496	-				-0.2
5,492,496	-				-1.3
5,492,496	-				-0.5
5,492,539	-				+0.5
5,493,094	+		Psyr_4632	0.48	-1.5
5,493,123	+		Psyr_4632	0.50	+0.8
5,493,123	+		Psyr_4632	0.50	-2.1
5,493,123	+		Psyr_4632	0.50	-0.7
5,493,124	-		Psyr_4632	0.50	-0.7
5,493,124	-		Psyr_4632	0.50	-0.2
5,493,188	+		Psyr_4632	0.55	+0.7
5,493,188	+		Psyr_4632	0.55	+0.2
5,493,188	+		Psyr_4632	0.55	-0.1
5,493,188	+		Psyr_4632	0.55	+1.3
5,493,188	+		Psyr_4632	0.55	-0.4
5,493,189	-		Psyr_4632	0.55	+0.8
5,493,189	-		Psyr_4632	0.55	-0.7
5,493,189	-		Psyr_4632	0.55	-0.8
5,493,189	-		Psyr_4632	0.55	+0.1
5,493,189	-		Psyr_4632	0.55	+2.3
5,493,189	-		Psyr_4632	0.55	+1.1
5,493,311	+		Psyr_4632	0.65	-0.2
5,493,311	+		Psyr_4632	0.65	+0.8
5,493,311	+		Psyr_4632	0.65	-0.5
5,493,311	+		Psyr_4632	0.65	+0.3
5,493,311	+		Psyr_4632	0.65	-0.8
5,493,311	+		Psyr_4632	0.65	-2.1
5,493,312	-		Psyr_4632	0.65	-2.1
5,493,312	-		Psyr_4632	0.65	-0.2
5,493,312	-		Psyr_4632	0.65	-0.1
5,493,328	+		Psyr_4632	0.66	-0.6
5,493,328	+		Psyr_4632	0.66	-1.4
5,493,328	+		Psyr_4632	0.66	-2.7
5,493,328	+		Psyr_4632	0.66	+0.3
5,493,328	+		Psyr_4632	0.66	+0.3
5,493,328	+		Psyr_4632	0.66	+1.3
5,493,329	-		Psyr_4632	0.66	-0.9
5,493,329	-		Psyr_4632	0.66	-1.2
5,493,329	-		Psyr_4632	0.66	+0.4
5,493,329	-		Psyr_4632	0.66	-0.4
5,493,332	+		Psyr_4632	0.66	+0.3
5,493,332	+		Psyr_4632	0.66	-1.5
5,493,332	+		Psyr_4632	0.66	-1.6
5,493,332	+		Psyr_4632	0.66	+0.1
5,493,332	+		Psyr_4632	0.66	-0.9
5,493,332	+		Psyr_4632	0.66	-1.1
5,493,333	-		Psyr_4632	0.66	+0.3
5,493,333	-		Psyr_4632	0.66	-0.3
5,493,333	-		Psyr_4632	0.66	+0.3