Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3707

Experiment: Fumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3705 and Psyr_3706 are separated by 194 nucleotidesPsyr_3706 and Psyr_3707 are separated by 66 nucleotidesPsyr_3707 and Psyr_3708 are separated by 394 nucleotides Psyr_3705: Psyr_3705 - conserved hypothetical protein, at 4,391,725 to 4,392,549 _3705 Psyr_3706: Psyr_3706 - Protein of unknown function DUF335, at 4,392,744 to 4,393,238 _3706 Psyr_3707: Psyr_3707 - Sodium:dicarboxylate symporter, at 4,393,305 to 4,394,657 _3707 Psyr_3708: Psyr_3708 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,395,052 to 4,396,398 _3708 Position (kb) 4393 4394 4395Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.551 kb on + strandat 4392.551 kb on + strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.617 kb on + strandat 4392.618 kb on - strandat 4392.618 kb on - strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.701 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.739 kb on - strandat 4392.906 kb on + strand, within Psyr_3706at 4392.906 kb on + strand, within Psyr_3706at 4392.906 kb on + strand, within Psyr_3706at 4392.907 kb on - strand, within Psyr_3706at 4392.907 kb on - strand, within Psyr_3706at 4392.907 kb on - strand, within Psyr_3706at 4392.907 kb on - strand, within Psyr_3706at 4392.907 kb on - strand, within Psyr_3706at 4393.038 kb on + strand, within Psyr_3706at 4393.039 kb on - strand, within Psyr_3706at 4393.068 kb on + strand, within Psyr_3706at 4393.069 kb on - strand, within Psyr_3706at 4393.069 kb on - strand, within Psyr_3706at 4393.098 kb on + strand, within Psyr_3706at 4393.098 kb on + strand, within Psyr_3706at 4393.104 kb on + strand, within Psyr_3706at 4393.104 kb on + strand, within Psyr_3706at 4393.105 kb on - strand, within Psyr_3706at 4393.236 kb on + strandat 4393.319 kb on + strandat 4393.325 kb on + strandat 4393.326 kb on - strandat 4393.729 kb on + strand, within Psyr_3707at 4393.729 kb on + strand, within Psyr_3707at 4393.729 kb on + strand, within Psyr_3707at 4393.729 kb on + strand, within Psyr_3707at 4393.729 kb on + strand, within Psyr_3707at 4393.739 kb on + strand, within Psyr_3707at 4393.760 kb on - strand, within Psyr_3707at 4393.856 kb on + strand, within Psyr_3707at 4393.857 kb on - strand, within Psyr_3707at 4393.857 kb on - strand, within Psyr_3707at 4393.888 kb on + strand, within Psyr_3707at 4393.888 kb on + strand, within Psyr_3707at 4393.889 kb on - strand, within Psyr_3707at 4393.941 kb on + strand, within Psyr_3707at 4393.972 kb on + strand, within Psyr_3707at 4393.972 kb on + strand, within Psyr_3707at 4393.972 kb on + strand, within Psyr_3707at 4393.972 kb on + strand, within Psyr_3707at 4393.972 kb on + strand, within Psyr_3707at 4393.972 kb on + strand, within Psyr_3707at 4393.973 kb on - strand, within Psyr_3707at 4394.267 kb on + strand, within Psyr_3707at 4394.294 kb on - strand, within Psyr_3707at 4394.294 kb on - strand, within Psyr_3707at 4394.413 kb on + strand, within Psyr_3707at 4394.413 kb on + strand, within Psyr_3707at 4394.414 kb on - strand, within Psyr_3707at 4394.635 kb on + strandat 4394.636 kb on - strandat 4394.636 kb on - strandat 4394.636 kb on - strandat 4394.711 kb on + strandat 4394.712 kb on - strandat 4394.712 kb on - strandat 4394.713 kb on + strandat 4394.714 kb on - strandat 4394.714 kb on - strandat 4394.782 kb on + strandat 4394.782 kb on + strandat 4394.782 kb on + strandat 4394.782 kb on + strandat 4394.783 kb on - strandat 4394.783 kb on - strandat 4394.783 kb on - strandat 4394.783 kb on - strandat 4394.783 kb on - strandat 4394.783 kb on - strandat 4394.783 kb on - strandat 4394.786 kb on + strandat 4394.787 kb on - strandat 4394.833 kb on + strandat 4394.833 kb on + strandat 4394.834 kb on - strandat 4394.834 kb on - strandat 4394.834 kb on - strandat 4394.857 kb on - strandat 4394.896 kb on - strandat 4395.028 kb on + strandat 4395.028 kb on + strandat 4395.028 kb on + strandat 4395.029 kb on - strandat 4395.029 kb on - strandat 4395.029 kb on - strandat 4395.372 kb on + strand, within Psyr_3708at 4395.620 kb on - strand, within Psyr_3708

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumaric (C)
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4,392,413 + Psyr_3705 0.83 +0.2
4,392,413 + Psyr_3705 0.83 +1.0
4,392,413 + Psyr_3705 0.83 -2.7
4,392,413 + Psyr_3705 0.83 +1.8
4,392,413 + Psyr_3705 0.83 +0.6
4,392,413 + Psyr_3705 0.83 +1.6
4,392,414 - Psyr_3705 0.84 -0.1
4,392,414 - Psyr_3705 0.84 +0.3
4,392,414 - Psyr_3705 0.84 -1.6
4,392,414 - Psyr_3705 0.84 -0.9
4,392,414 - Psyr_3705 0.84 -2.1
4,392,414 - Psyr_3705 0.84 -0.3
4,392,414 - Psyr_3705 0.84 +0.4
4,392,551 + -0.1
4,392,551 + -0.7
4,392,552 - -0.1
4,392,552 - +0.6
4,392,552 - +1.6
4,392,552 - +0.8
4,392,552 - +0.5
4,392,617 + -2.0
4,392,618 - -0.6
4,392,618 - -0.9
4,392,621 + -1.2
4,392,621 + +0.2
4,392,621 + -0.7
4,392,621 + -1.1
4,392,621 + -0.1
4,392,622 - +1.3
4,392,622 - -0.1
4,392,622 - -1.1
4,392,622 - +1.0
4,392,622 - -2.4
4,392,701 - -0.8
4,392,717 - -0.1
4,392,717 - -1.7
4,392,717 - +1.2
4,392,717 - -0.5
4,392,717 - +0.2
4,392,717 - -2.4
4,392,739 - +0.9
4,392,906 + Psyr_3706 0.33 +0.2
4,392,906 + Psyr_3706 0.33 +0.9
4,392,906 + Psyr_3706 0.33 -1.0
4,392,907 - Psyr_3706 0.33 +0.2
4,392,907 - Psyr_3706 0.33 -1.1
4,392,907 - Psyr_3706 0.33 +0.5
4,392,907 - Psyr_3706 0.33 -1.3
4,392,907 - Psyr_3706 0.33 +0.5
4,393,038 + Psyr_3706 0.59 +1.2
4,393,039 - Psyr_3706 0.60 -3.4
4,393,068 + Psyr_3706 0.65 -0.4
4,393,069 - Psyr_3706 0.66 -0.3
4,393,069 - Psyr_3706 0.66 -0.6
4,393,098 + Psyr_3706 0.72 -0.9
4,393,098 + Psyr_3706 0.72 +1.8
4,393,104 + Psyr_3706 0.73 -0.4
4,393,104 + Psyr_3706 0.73 +2.1
4,393,105 - Psyr_3706 0.73 +0.3
4,393,236 + +0.3
4,393,319 + -1.5
4,393,325 + -3.4
4,393,326 - -0.2
4,393,729 + Psyr_3707 0.31 -1.1
4,393,729 + Psyr_3707 0.31 -2.4
4,393,729 + Psyr_3707 0.31 -4.0
4,393,729 + Psyr_3707 0.31 -1.3
4,393,729 + Psyr_3707 0.31 -1.3
4,393,739 + Psyr_3707 0.32 -0.7
4,393,760 - Psyr_3707 0.34 +0.9
4,393,856 + Psyr_3707 0.41 -3.3
4,393,857 - Psyr_3707 0.41 -3.6
4,393,857 - Psyr_3707 0.41 +0.3
4,393,888 + Psyr_3707 0.43 -1.1
4,393,888 + Psyr_3707 0.43 -0.1
4,393,889 - Psyr_3707 0.43 -3.4
4,393,941 + Psyr_3707 0.47 -0.4
4,393,972 + Psyr_3707 0.49 +0.9
4,393,972 + Psyr_3707 0.49 -1.7
4,393,972 + Psyr_3707 0.49 -1.5
4,393,972 + Psyr_3707 0.49 -1.4
4,393,972 + Psyr_3707 0.49 -0.1
4,393,972 + Psyr_3707 0.49 -0.7
4,393,973 - Psyr_3707 0.49 -1.4
4,394,267 + Psyr_3707 0.71 +0.4
4,394,294 - Psyr_3707 0.73 -2.0
4,394,294 - Psyr_3707 0.73 -1.1
4,394,413 + Psyr_3707 0.82 -1.5
4,394,413 + Psyr_3707 0.82 -3.7
4,394,414 - Psyr_3707 0.82 -3.1
4,394,635 + -2.1
4,394,636 - -2.1
4,394,636 - -2.6
4,394,636 - -1.1
4,394,711 + -0.9
4,394,712 - -0.4
4,394,712 - -2.1
4,394,713 + -1.6
4,394,714 - +1.2
4,394,714 - +0.9
4,394,782 + +1.5
4,394,782 + -1.7
4,394,782 + -1.1
4,394,782 + +0.9
4,394,783 - -0.1
4,394,783 - -0.5
4,394,783 - -1.2
4,394,783 - -0.8
4,394,783 - -1.5
4,394,783 - -1.7
4,394,783 - -0.1
4,394,786 + +0.5
4,394,787 - -0.5
4,394,833 + -2.7
4,394,833 + -1.1
4,394,834 - +0.9
4,394,834 - +0.9
4,394,834 - -1.7
4,394,857 - +0.5
4,394,896 - +1.5
4,395,028 + -0.4
4,395,028 + +0.6
4,395,028 + +0.6
4,395,029 - -0.6
4,395,029 - -0.1
4,395,029 - -2.4
4,395,372 + Psyr_3708 0.24 -1.6
4,395,620 - Psyr_3708 0.42 -0.1

Or see this region's nucleotide sequence