Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3705 and Psyr_3706 are separated by 194 nucleotides Psyr_3706 and Psyr_3707 are separated by 66 nucleotides Psyr_3707 and Psyr_3708 are separated by 394 nucleotides
Psyr_3705: Psyr_3705 - conserved hypothetical protein, at 4,391,725 to 4,392,549
_3705
Psyr_3706: Psyr_3706 - Protein of unknown function DUF335, at 4,392,744 to 4,393,238
_3706
Psyr_3707: Psyr_3707 - Sodium:dicarboxylate symporter, at 4,393,305 to 4,394,657
_3707
Psyr_3708: Psyr_3708 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,395,052 to 4,396,398
_3708
Position (kb)
4393
4394
4395 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4392.413 kb on + strand, within Psyr_3705 at 4392.413 kb on + strand, within Psyr_3705 at 4392.413 kb on + strand, within Psyr_3705 at 4392.413 kb on + strand, within Psyr_3705 at 4392.413 kb on + strand, within Psyr_3705 at 4392.413 kb on + strand, within Psyr_3705 at 4392.414 kb on - strand, within Psyr_3705 at 4392.414 kb on - strand, within Psyr_3705 at 4392.414 kb on - strand, within Psyr_3705 at 4392.414 kb on - strand, within Psyr_3705 at 4392.414 kb on - strand, within Psyr_3705 at 4392.414 kb on - strand, within Psyr_3705 at 4392.414 kb on - strand, within Psyr_3705 at 4392.551 kb on + strand at 4392.551 kb on + strand at 4392.552 kb on - strand at 4392.552 kb on - strand at 4392.552 kb on - strand at 4392.552 kb on - strand at 4392.552 kb on - strand at 4392.617 kb on + strand at 4392.618 kb on - strand at 4392.618 kb on - strand at 4392.621 kb on + strand at 4392.621 kb on + strand at 4392.621 kb on + strand at 4392.621 kb on + strand at 4392.621 kb on + strand at 4392.622 kb on - strand at 4392.622 kb on - strand at 4392.622 kb on - strand at 4392.622 kb on - strand at 4392.622 kb on - strand at 4392.701 kb on - strand at 4392.717 kb on - strand at 4392.717 kb on - strand at 4392.717 kb on - strand at 4392.717 kb on - strand at 4392.717 kb on - strand at 4392.717 kb on - strand at 4392.739 kb on - strand at 4392.906 kb on + strand, within Psyr_3706 at 4392.906 kb on + strand, within Psyr_3706 at 4392.906 kb on + strand, within Psyr_3706 at 4392.907 kb on - strand, within Psyr_3706 at 4392.907 kb on - strand, within Psyr_3706 at 4392.907 kb on - strand, within Psyr_3706 at 4392.907 kb on - strand, within Psyr_3706 at 4392.907 kb on - strand, within Psyr_3706 at 4393.038 kb on + strand, within Psyr_3706 at 4393.039 kb on - strand, within Psyr_3706 at 4393.068 kb on + strand, within Psyr_3706 at 4393.069 kb on - strand, within Psyr_3706 at 4393.069 kb on - strand, within Psyr_3706 at 4393.098 kb on + strand, within Psyr_3706 at 4393.098 kb on + strand, within Psyr_3706 at 4393.104 kb on + strand, within Psyr_3706 at 4393.104 kb on + strand, within Psyr_3706 at 4393.105 kb on - strand, within Psyr_3706 at 4393.236 kb on + strand at 4393.319 kb on + strand at 4393.325 kb on + strand at 4393.326 kb on - strand at 4393.729 kb on + strand, within Psyr_3707 at 4393.729 kb on + strand, within Psyr_3707 at 4393.729 kb on + strand, within Psyr_3707 at 4393.729 kb on + strand, within Psyr_3707 at 4393.729 kb on + strand, within Psyr_3707 at 4393.739 kb on + strand, within Psyr_3707 at 4393.760 kb on - strand, within Psyr_3707 at 4393.856 kb on + strand, within Psyr_3707 at 4393.857 kb on - strand, within Psyr_3707 at 4393.857 kb on - strand, within Psyr_3707 at 4393.888 kb on + strand, within Psyr_3707 at 4393.888 kb on + strand, within Psyr_3707 at 4393.889 kb on - strand, within Psyr_3707 at 4393.941 kb on + strand, within Psyr_3707 at 4393.972 kb on + strand, within Psyr_3707 at 4393.972 kb on + strand, within Psyr_3707 at 4393.972 kb on + strand, within Psyr_3707 at 4393.972 kb on + strand, within Psyr_3707 at 4393.972 kb on + strand, within Psyr_3707 at 4393.972 kb on + strand, within Psyr_3707 at 4393.973 kb on - strand, within Psyr_3707 at 4394.267 kb on + strand, within Psyr_3707 at 4394.294 kb on - strand, within Psyr_3707 at 4394.294 kb on - strand, within Psyr_3707 at 4394.413 kb on + strand, within Psyr_3707 at 4394.413 kb on + strand, within Psyr_3707 at 4394.414 kb on - strand, within Psyr_3707 at 4394.635 kb on + strand at 4394.636 kb on - strand at 4394.636 kb on - strand at 4394.636 kb on - strand at 4394.711 kb on + strand at 4394.712 kb on - strand at 4394.712 kb on - strand at 4394.713 kb on + strand at 4394.714 kb on - strand at 4394.714 kb on - strand at 4394.782 kb on + strand at 4394.782 kb on + strand at 4394.782 kb on + strand at 4394.782 kb on + strand at 4394.783 kb on - strand at 4394.783 kb on - strand at 4394.783 kb on - strand at 4394.783 kb on - strand at 4394.783 kb on - strand at 4394.783 kb on - strand at 4394.783 kb on - strand at 4394.786 kb on + strand at 4394.787 kb on - strand at 4394.833 kb on + strand at 4394.833 kb on + strand at 4394.834 kb on - strand at 4394.834 kb on - strand at 4394.834 kb on - strand at 4394.857 kb on - strand at 4394.896 kb on - strand at 4395.028 kb on + strand at 4395.028 kb on + strand at 4395.028 kb on + strand at 4395.029 kb on - strand at 4395.029 kb on - strand at 4395.029 kb on - strand at 4395.372 kb on + strand, within Psyr_3708 at 4395.620 kb on - strand, within Psyr_3708
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 4,392,413 + Psyr_3705 0.83 +0.2 4,392,413 + Psyr_3705 0.83 +1.0 4,392,413 + Psyr_3705 0.83 -2.7 4,392,413 + Psyr_3705 0.83 +1.8 4,392,413 + Psyr_3705 0.83 +0.6 4,392,413 + Psyr_3705 0.83 +1.6 4,392,414 - Psyr_3705 0.84 -0.1 4,392,414 - Psyr_3705 0.84 +0.3 4,392,414 - Psyr_3705 0.84 -1.6 4,392,414 - Psyr_3705 0.84 -0.9 4,392,414 - Psyr_3705 0.84 -2.1 4,392,414 - Psyr_3705 0.84 -0.3 4,392,414 - Psyr_3705 0.84 +0.4 4,392,551 + -0.1 4,392,551 + -0.7 4,392,552 - -0.1 4,392,552 - +0.6 4,392,552 - +1.6 4,392,552 - +0.8 4,392,552 - +0.5 4,392,617 + -2.0 4,392,618 - -0.6 4,392,618 - -0.9 4,392,621 + -1.2 4,392,621 + +0.2 4,392,621 + -0.7 4,392,621 + -1.1 4,392,621 + -0.1 4,392,622 - +1.3 4,392,622 - -0.1 4,392,622 - -1.1 4,392,622 - +1.0 4,392,622 - -2.4 4,392,701 - -0.8 4,392,717 - -0.1 4,392,717 - -1.7 4,392,717 - +1.2 4,392,717 - -0.5 4,392,717 - +0.2 4,392,717 - -2.4 4,392,739 - +0.9 4,392,906 + Psyr_3706 0.33 +0.2 4,392,906 + Psyr_3706 0.33 +0.9 4,392,906 + Psyr_3706 0.33 -1.0 4,392,907 - Psyr_3706 0.33 +0.2 4,392,907 - Psyr_3706 0.33 -1.1 4,392,907 - Psyr_3706 0.33 +0.5 4,392,907 - Psyr_3706 0.33 -1.3 4,392,907 - Psyr_3706 0.33 +0.5 4,393,038 + Psyr_3706 0.59 +1.2 4,393,039 - Psyr_3706 0.60 -3.4 4,393,068 + Psyr_3706 0.65 -0.4 4,393,069 - Psyr_3706 0.66 -0.3 4,393,069 - Psyr_3706 0.66 -0.6 4,393,098 + Psyr_3706 0.72 -0.9 4,393,098 + Psyr_3706 0.72 +1.8 4,393,104 + Psyr_3706 0.73 -0.4 4,393,104 + Psyr_3706 0.73 +2.1 4,393,105 - Psyr_3706 0.73 +0.3 4,393,236 + +0.3 4,393,319 + -1.5 4,393,325 + -3.4 4,393,326 - -0.2 4,393,729 + Psyr_3707 0.31 -1.1 4,393,729 + Psyr_3707 0.31 -2.4 4,393,729 + Psyr_3707 0.31 -4.0 4,393,729 + Psyr_3707 0.31 -1.3 4,393,729 + Psyr_3707 0.31 -1.3 4,393,739 + Psyr_3707 0.32 -0.7 4,393,760 - Psyr_3707 0.34 +0.9 4,393,856 + Psyr_3707 0.41 -3.3 4,393,857 - Psyr_3707 0.41 -3.6 4,393,857 - Psyr_3707 0.41 +0.3 4,393,888 + Psyr_3707 0.43 -1.1 4,393,888 + Psyr_3707 0.43 -0.1 4,393,889 - Psyr_3707 0.43 -3.4 4,393,941 + Psyr_3707 0.47 -0.4 4,393,972 + Psyr_3707 0.49 +0.9 4,393,972 + Psyr_3707 0.49 -1.7 4,393,972 + Psyr_3707 0.49 -1.5 4,393,972 + Psyr_3707 0.49 -1.4 4,393,972 + Psyr_3707 0.49 -0.1 4,393,972 + Psyr_3707 0.49 -0.7 4,393,973 - Psyr_3707 0.49 -1.4 4,394,267 + Psyr_3707 0.71 +0.4 4,394,294 - Psyr_3707 0.73 -2.0 4,394,294 - Psyr_3707 0.73 -1.1 4,394,413 + Psyr_3707 0.82 -1.5 4,394,413 + Psyr_3707 0.82 -3.7 4,394,414 - Psyr_3707 0.82 -3.1 4,394,635 + -2.1 4,394,636 - -2.1 4,394,636 - -2.6 4,394,636 - -1.1 4,394,711 + -0.9 4,394,712 - -0.4 4,394,712 - -2.1 4,394,713 + -1.6 4,394,714 - +1.2 4,394,714 - +0.9 4,394,782 + +1.5 4,394,782 + -1.7 4,394,782 + -1.1 4,394,782 + +0.9 4,394,783 - -0.1 4,394,783 - -0.5 4,394,783 - -1.2 4,394,783 - -0.8 4,394,783 - -1.5 4,394,783 - -1.7 4,394,783 - -0.1 4,394,786 + +0.5 4,394,787 - -0.5 4,394,833 + -2.7 4,394,833 + -1.1 4,394,834 - +0.9 4,394,834 - +0.9 4,394,834 - -1.7 4,394,857 - +0.5 4,394,896 - +1.5 4,395,028 + -0.4 4,395,028 + +0.6 4,395,028 + +0.6 4,395,029 - -0.6 4,395,029 - -0.1 4,395,029 - -2.4 4,395,372 + Psyr_3708 0.24 -1.6 4,395,620 - Psyr_3708 0.42 -0.1
Or see this region's nucleotide sequence