Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0992

Experiment: Fumaric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fumaric (C)
1,123,101	+		Psyr_0991	0.50	-0.0
1,123,137	+		Psyr_0991	0.51	+0.1
1,123,137	+		Psyr_0991	0.51	+1.1
1,123,137	+		Psyr_0991	0.51	-0.9
1,123,137	+		Psyr_0991	0.51	-0.2
1,123,137	+		Psyr_0991	0.51	-1.1
1,123,138	-		Psyr_0991	0.51	-1.5
1,123,138	-		Psyr_0991	0.51	+0.2
1,123,138	-		Psyr_0991	0.51	+0.4
1,123,138	-		Psyr_0991	0.51	-0.0
1,123,138	-		Psyr_0991	0.51	+1.1
1,123,150	-		Psyr_0991	0.52	+0.1
1,123,150	-		Psyr_0991	0.52	-1.4
1,123,311	+		Psyr_0991	0.60	-0.3
1,123,311	+		Psyr_0991	0.60	-1.0
1,123,311	+		Psyr_0991	0.60	+1.3
1,123,311	+		Psyr_0991	0.60	+0.2
1,123,312	-		Psyr_0991	0.60	+0.7
1,123,312	-		Psyr_0991	0.60	-1.3
1,123,312	-		Psyr_0991	0.60	+0.5
1,123,312	-		Psyr_0991	0.60	-0.9
1,123,312	-		Psyr_0991	0.60	-0.3
1,123,314	+		Psyr_0991	0.61	+1.4
1,123,314	+		Psyr_0991	0.61	+0.5
1,123,315	-		Psyr_0991	0.61	+0.4
1,123,315	-		Psyr_0991	0.61	+1.0
1,123,315	-		Psyr_0991	0.61	+0.1
1,123,315	-		Psyr_0991	0.61	+0.3
1,123,315	-		Psyr_0991	0.61	-0.1
1,123,450	-		Psyr_0991	0.68	+1.2
1,123,833	+		Psyr_0991	0.87	+1.1
1,123,833	+		Psyr_0991	0.87	-0.4
1,123,834	-		Psyr_0991	0.87	-0.8
1,123,834	-		Psyr_0991	0.87	+0.1
1,123,834	-		Psyr_0991	0.87	-0.1
1,123,900	-				-0.3
1,123,980	+				+1.3
1,123,980	+				+0.2
1,123,980	+				+1.7
1,123,981	-				-1.9
1,123,981	-				-2.5
1,123,981	-				+2.9
1,123,981	-				+0.7
1,123,981	-				-0.2
1,123,998	+				+1.1
1,124,022	+				-0.0
1,124,022	+				-0.7
1,124,022	+				-0.9
1,124,022	+				+0.8
1,124,022	+				-0.5
1,124,022	+				-0.6
1,124,023	-				-0.1
1,124,023	-				-0.9
1,124,023	-				-0.9
1,124,023	-				-1.4
1,124,023	-				+1.7
1,124,023	-				-1.5
1,124,076	+				+0.1
1,124,076	+				+1.3
1,124,076	+				-0.9
1,124,077	-				+1.1
1,124,077	-				+0.9
1,124,247	+		Psyr_0992	0.11	-0.5
1,124,383	+		Psyr_0992	0.21	-2.2
1,124,384	-		Psyr_0992	0.21	-1.5
1,124,384	-		Psyr_0992	0.21	+2.3
1,124,384	-		Psyr_0992	0.21	+0.3
1,124,384	-		Psyr_0992	0.21	-0.7
1,124,701	+		Psyr_0992	0.44	+0.5
1,124,701	+		Psyr_0992	0.44	+1.8
1,124,701	+		Psyr_0992	0.44	-0.2
1,124,701	+		Psyr_0992	0.44	-1.0
1,124,702	-		Psyr_0992	0.44	-0.1
1,124,702	-		Psyr_0992	0.44	-1.1
1,124,776	+		Psyr_0992	0.49	+0.7
1,124,776	+		Psyr_0992	0.49	+0.8
1,124,777	-		Psyr_0992	0.49	+1.9
1,124,777	-		Psyr_0992	0.49	+0.5
1,124,777	-		Psyr_0992	0.49	+0.9
1,124,831	+		Psyr_0992	0.53	+0.1
1,124,831	+		Psyr_0992	0.53	+0.5
1,124,832	-		Psyr_0992	0.53	+1.0
1,124,832	-		Psyr_0992	0.53	-0.7
1,124,878	+		Psyr_0992	0.57	+0.4
1,124,878	+		Psyr_0992	0.57	-1.5
1,124,878	+		Psyr_0992	0.57	+1.3
1,124,879	-		Psyr_0992	0.57	+0.8
1,124,924	-		Psyr_0992	0.60	+0.5
1,124,924	-		Psyr_0992	0.60	-1.1
1,124,980	+		Psyr_0992	0.64	-2.4
1,124,980	+		Psyr_0992	0.64	-0.9
1,124,980	+		Psyr_0992	0.64	+2.7
1,124,980	+		Psyr_0992	0.64	+1.1
1,124,980	+		Psyr_0992	0.64	-0.4
1,124,980	+		Psyr_0992	0.64	-0.1
1,124,981	-		Psyr_0992	0.64	-1.9
1,124,981	-		Psyr_0992	0.64	+0.9
1,124,981	-		Psyr_0992	0.64	-0.3
1,124,981	-		Psyr_0992	0.64	+0.3
1,124,981	-		Psyr_0992	0.64	+2.4
1,124,981	-		Psyr_0992	0.64	-1.0
1,124,981	-		Psyr_0992	0.64	-0.9
1,125,002	-		Psyr_0992	0.66	+0.7
1,125,034	+		Psyr_0992	0.68	+1.7
1,125,034	+		Psyr_0992	0.68	+0.7
1,125,035	-		Psyr_0992	0.68	+0.1
1,125,035	-		Psyr_0992	0.68	+1.2
1,125,183	+		Psyr_0992	0.79	+0.3
1,125,183	+		Psyr_0992	0.79	+1.6
1,125,183	+		Psyr_0992	0.79	+0.3
1,125,183	+		Psyr_0992	0.79	+0.1
1,125,183	+		Psyr_0992	0.79	-1.2
1,125,183	+		Psyr_0992	0.79	+1.5
1,125,183	+		Psyr_0992	0.79	-0.3
1,125,183	+		Psyr_0992	0.79	-0.2
1,125,184	-		Psyr_0992	0.79	+0.8
1,125,184	-		Psyr_0992	0.79	+1.1
1,125,184	-		Psyr_0992	0.79	+0.5
1,125,184	-		Psyr_0992	0.79	-0.6
1,125,184	-		Psyr_0992	0.79	-0.3
1,125,184	-		Psyr_0992	0.79	+0.2
1,125,184	-		Psyr_0992	0.79	-3.2
1,125,187	+		Psyr_0992	0.79	+0.6
1,125,187	+		Psyr_0992	0.79	+0.2
1,125,187	+		Psyr_0992	0.79	+0.4
1,125,187	+		Psyr_0992	0.79	-0.0
1,125,187	+		Psyr_0992	0.79	+1.1
1,125,187	+		Psyr_0992	0.79	-0.9
1,125,188	-		Psyr_0992	0.79	+0.3
1,125,188	-		Psyr_0992	0.79	+1.1
1,125,188	-		Psyr_0992	0.79	+1.4
1,125,188	-		Psyr_0992	0.79	+0.8
1,125,247	+		Psyr_0992	0.84	-0.3
1,125,248	-		Psyr_0992	0.84	-0.9
1,125,298	+		Psyr_0992	0.87	-0.4
1,125,298	+		Psyr_0992	0.87	-1.7
1,125,302	-		Psyr_0992	0.88	-0.7
1,125,314	+		Psyr_0992	0.88	-0.1
1,125,315	-		Psyr_0992	0.89	+0.1
1,125,315	-		Psyr_0992	0.89	-0.3
1,125,315	-		Psyr_0992	0.89	-0.9
1,125,315	-		Psyr_0992	0.89	+0.5
1,125,341	-				-0.4
1,125,362	-				+0.1
1,125,362	-				-2.5
1,125,400	+				-0.4
1,125,473	-				-0.8
1,125,563	+				+0.2
1,125,563	+				+0.9
1,125,563	+				+2.1
1,125,563	+				-0.5
1,125,563	+				-0.6
1,125,563	+				-2.9
1,125,564	-				-0.1
1,125,564	-				-2.1
1,125,564	-				-0.5
1,125,565	+				+1.9
1,125,565	+				-1.9
1,125,565	+				-0.5
1,125,565	+				-0.4
1,125,565	+				-1.1
1,125,565	+				-0.2
1,125,565	+				-0.7
1,125,565	+				+0.7
1,125,565	+				+0.4
1,125,565	+				+0.7
1,125,565	+				-0.4
1,125,565	+				+1.1
1,125,566	-				-0.0
1,125,566	-				+2.9
1,125,566	-				+0.2
1,125,566	-				-3.2
1,125,566	-				-0.9
1,125,566	-				-1.0
1,125,566	-				-1.3
1,125,566	-				-0.2
1,125,668	-				+0.8
1,125,771	+				-2.1
1,125,913	+				-0.8
1,125,913	+				+0.1
1,125,914	-				+1.1
1,125,914	-				-0.7
1,126,127	-		Psyr_0993	0.17	+0.4
1,126,127	-		Psyr_0993	0.17	-2.0
1,126,127	-		Psyr_0993	0.17	+1.2
1,126,127	-		Psyr_0993	0.17	-0.8
1,126,198	+		Psyr_0993	0.20	-0.1
1,126,198	+		Psyr_0993	0.20	-0.3
1,126,198	+		Psyr_0993	0.20	+1.7
1,126,199	-		Psyr_0993	0.20	-0.2