Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0637 and Psyr_0638 are separated by 14 nucleotides Psyr_0638 and Psyr_0639 are separated by 84 nucleotides Psyr_0639 and Psyr_0640 are separated by 18 nucleotides Psyr_0640 and Psyr_0641 are separated by 19 nucleotides
Psyr_0637: Psyr_0637 - LrgB-like protein, at 726,631 to 727,347
_0637
Psyr_0638: Psyr_0638 - Peptidase S16, lon N-terminal, at 727,362 to 727,952
_0638
Psyr_0639: Psyr_0639 - lipoprotein, putative, at 728,037 to 728,603
_0639
Psyr_0640: Psyr_0640 - lipoprotein, putative, at 728,622 to 729,260
_0640
Psyr_0641: Psyr_0641 - smtA protein, at 729,280 to 730,029
_0641
Position (kb) 728
729 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 727.131 kb on - strand, within Psyr_0637 at 727.345 kb on + strand at 727.346 kb on - strand at 727.362 kb on - strand at 727.496 kb on + strand, within Psyr_0638 at 727.497 kb on - strand, within Psyr_0638 at 727.809 kb on + strand, within Psyr_0638 at 727.834 kb on - strand, within Psyr_0638 at 727.982 kb on + strand at 728.180 kb on + strand, within Psyr_0639 at 728.180 kb on + strand, within Psyr_0639 at 728.180 kb on + strand, within Psyr_0639 at 728.181 kb on - strand, within Psyr_0639 at 728.181 kb on - strand, within Psyr_0639 at 728.181 kb on - strand, within Psyr_0639 at 728.206 kb on + strand, within Psyr_0639 at 728.206 kb on + strand, within Psyr_0639 at 728.206 kb on - strand, within Psyr_0639 at 728.207 kb on - strand, within Psyr_0639 at 728.207 kb on - strand, within Psyr_0639 at 728.284 kb on + strand, within Psyr_0639 at 728.284 kb on + strand, within Psyr_0639 at 728.285 kb on - strand, within Psyr_0639 at 728.591 kb on + strand at 728.636 kb on - strand at 728.789 kb on - strand, within Psyr_0640 at 728.789 kb on - strand, within Psyr_0640 at 728.845 kb on + strand, within Psyr_0640 at 728.872 kb on + strand, within Psyr_0640 at 728.873 kb on - strand, within Psyr_0640 at 728.875 kb on + strand, within Psyr_0640 at 728.884 kb on + strand, within Psyr_0640 at 728.884 kb on + strand, within Psyr_0640 at 728.885 kb on - strand, within Psyr_0640 at 728.938 kb on + strand, within Psyr_0640 at 728.938 kb on + strand, within Psyr_0640 at 728.938 kb on + strand, within Psyr_0640 at 728.939 kb on - strand, within Psyr_0640 at 728.939 kb on - strand, within Psyr_0640 at 728.939 kb on - strand, within Psyr_0640 at 729.178 kb on + strand, within Psyr_0640 at 729.178 kb on + strand, within Psyr_0640 at 729.179 kb on - strand, within Psyr_0640 at 729.182 kb on + strand, within Psyr_0640 at 729.240 kb on + strand at 729.240 kb on + strand at 729.240 kb on + strand at 729.240 kb on + strand at 729.241 kb on - strand at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.407 kb on + strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.408 kb on - strand, within Psyr_0641 at 729.419 kb on - strand, within Psyr_0641 at 729.597 kb on - strand, within Psyr_0641 at 729.597 kb on - strand, within Psyr_0641
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 727,131 - Psyr_0637 0.70 +0.9 727,345 + -2.4 727,346 - +1.2 727,362 - -0.4 727,496 + Psyr_0638 0.23 -0.3 727,497 - Psyr_0638 0.23 -0.6 727,809 + Psyr_0638 0.76 +0.6 727,834 - Psyr_0638 0.80 -2.9 727,982 + -0.4 728,180 + Psyr_0639 0.25 -2.1 728,180 + Psyr_0639 0.25 -1.8 728,180 + Psyr_0639 0.25 -0.9 728,181 - Psyr_0639 0.25 -2.9 728,181 - Psyr_0639 0.25 -3.4 728,181 - Psyr_0639 0.25 +1.2 728,206 + Psyr_0639 0.30 -1.2 728,206 + Psyr_0639 0.30 -0.9 728,206 - Psyr_0639 0.30 -0.6 728,207 - Psyr_0639 0.30 +0.3 728,207 - Psyr_0639 0.30 -1.8 728,284 + Psyr_0639 0.44 -0.0 728,284 + Psyr_0639 0.44 -0.1 728,285 - Psyr_0639 0.44 +0.0 728,591 + -0.1 728,636 - +0.1 728,789 - Psyr_0640 0.26 +0.8 728,789 - Psyr_0640 0.26 -0.8 728,845 + Psyr_0640 0.35 +0.7 728,872 + Psyr_0640 0.39 +0.6 728,873 - Psyr_0640 0.39 -3.8 728,875 + Psyr_0640 0.40 -0.6 728,884 + Psyr_0640 0.41 +0.2 728,884 + Psyr_0640 0.41 -0.4 728,885 - Psyr_0640 0.41 -0.7 728,938 + Psyr_0640 0.49 -0.8 728,938 + Psyr_0640 0.49 +2.1 728,938 + Psyr_0640 0.49 -0.1 728,939 - Psyr_0640 0.50 -0.6 728,939 - Psyr_0640 0.50 -0.7 728,939 - Psyr_0640 0.50 +0.0 729,178 + Psyr_0640 0.87 +0.8 729,178 + Psyr_0640 0.87 -0.8 729,179 - Psyr_0640 0.87 +1.2 729,182 + Psyr_0640 0.88 -1.6 729,240 + -1.8 729,240 + -0.5 729,240 + +0.1 729,240 + +1.8 729,241 - -1.8 729,407 + Psyr_0641 0.17 -1.2 729,407 + Psyr_0641 0.17 +1.6 729,407 + Psyr_0641 0.17 -0.5 729,407 + Psyr_0641 0.17 -0.8 729,407 + Psyr_0641 0.17 +0.1 729,407 + Psyr_0641 0.17 -0.4 729,407 + Psyr_0641 0.17 +1.2 729,407 + Psyr_0641 0.17 +1.3 729,407 + Psyr_0641 0.17 -0.4 729,407 + Psyr_0641 0.17 -2.1 729,407 + Psyr_0641 0.17 +0.5 729,407 + Psyr_0641 0.17 -2.4 729,407 + Psyr_0641 0.17 +1.4 729,408 - Psyr_0641 0.17 +0.6 729,408 - Psyr_0641 0.17 -0.6 729,408 - Psyr_0641 0.17 +0.6 729,408 - Psyr_0641 0.17 -0.7 729,408 - Psyr_0641 0.17 +0.4 729,408 - Psyr_0641 0.17 -0.7 729,408 - Psyr_0641 0.17 -1.6 729,419 - Psyr_0641 0.19 +0.2 729,597 - Psyr_0641 0.42 -0.4 729,597 - Psyr_0641 0.42 -1.8
Or see this region's nucleotide sequence