Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0407 and Psyr_0408 are separated by 4 nucleotides Psyr_0408 and Psyr_0409 are separated by 114 nucleotides
Psyr_0407: Psyr_0407 - type II and III secretion system protein:NolW-like protein:NolW-like protein, at 436,404 to 438,560
_0407
Psyr_0408: Psyr_0408 - shikimate kinase, at 438,565 to 439,083
_0408
Psyr_0409: Psyr_0409 - 3-dehydroquinate synthase, at 439,198 to 440,301
_0409
Position (kb) 438
439
440 Strain fitness (log2 ratio) -2
-1
0
1
2 at 437.765 kb on + strand, within Psyr_0407 at 437.838 kb on + strand, within Psyr_0407 at 437.839 kb on - strand, within Psyr_0407 at 437.874 kb on - strand, within Psyr_0407 at 437.907 kb on + strand, within Psyr_0407 at 437.907 kb on + strand, within Psyr_0407 at 437.908 kb on - strand, within Psyr_0407 at 437.921 kb on + strand, within Psyr_0407 at 438.294 kb on + strand, within Psyr_0407 at 438.401 kb on + strand at 438.410 kb on + strand at 438.410 kb on + strand at 438.410 kb on + strand at 438.411 kb on - strand at 438.411 kb on - strand at 438.411 kb on - strand at 438.411 kb on - strand at 438.445 kb on + strand at 438.445 kb on + strand at 438.445 kb on + strand at 438.445 kb on + strand at 438.445 kb on + strand at 438.446 kb on - strand at 438.450 kb on + strand at 438.578 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 437,765 + Psyr_0407 0.63 -1.0 437,838 + Psyr_0407 0.66 +0.7 437,839 - Psyr_0407 0.67 +0.2 437,874 - Psyr_0407 0.68 +1.2 437,907 + Psyr_0407 0.70 +1.5 437,907 + Psyr_0407 0.70 +0.9 437,908 - Psyr_0407 0.70 +0.0 437,921 + Psyr_0407 0.70 -0.2 438,294 + Psyr_0407 0.88 -0.4 438,401 + -0.6 438,410 + +0.8 438,410 + +2.0 438,410 + +0.6 438,411 - -1.9 438,411 - -1.4 438,411 - -1.2 438,411 - -0.3 438,445 + -0.3 438,445 + -0.4 438,445 + -1.2 438,445 + -0.3 438,445 + +0.4 438,446 - -2.4 438,450 + +0.6 438,578 + -1.9
Or see this region's nucleotide sequence