Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0379

Experiment: Fumaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0379 and Psyr_0380 are separated by 202 nucleotides Psyr_0379: Psyr_0379 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 408,100 to 410,043 _0379 Psyr_0380: Psyr_0380 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 410,246 to 412,162 _0380 Position (kb) 408 409 410 411Strain fitness (log2 ratio) -2 -1 0 1 2at 407.120 kb on + strandat 407.120 kb on + strandat 407.889 kb on - strandat 408.018 kb on + strandat 408.053 kb on + strandat 408.053 kb on + strandat 408.053 kb on + strandat 408.053 kb on + strandat 408.053 kb on + strandat 408.053 kb on + strandat 408.053 kb on + strandat 408.053 kb on + strandat 408.053 kb on + strandat 408.054 kb on - strandat 408.054 kb on - strandat 408.054 kb on - strandat 408.054 kb on - strandat 408.056 kb on - strandat 408.098 kb on + strandat 408.098 kb on + strandat 408.099 kb on - strandat 408.099 kb on - strandat 408.099 kb on - strandat 408.099 kb on - strandat 408.099 kb on - strandat 408.218 kb on - strandat 408.218 kb on - strandat 408.231 kb on + strandat 408.985 kb on + strand, within Psyr_0379at 408.985 kb on + strand, within Psyr_0379at 408.985 kb on + strand, within Psyr_0379at 408.985 kb on + strand, within Psyr_0379at 408.985 kb on + strand, within Psyr_0379at 408.986 kb on - strand, within Psyr_0379at 408.986 kb on - strand, within Psyr_0379at 408.986 kb on - strand, within Psyr_0379at 408.986 kb on - strand, within Psyr_0379at 408.986 kb on - strand, within Psyr_0379at 408.986 kb on - strand, within Psyr_0379at 409.018 kb on + strand, within Psyr_0379at 409.019 kb on - strand, within Psyr_0379at 409.285 kb on + strand, within Psyr_0379at 409.285 kb on + strand, within Psyr_0379at 409.286 kb on - strand, within Psyr_0379at 409.286 kb on - strand, within Psyr_0379at 409.286 kb on - strand, within Psyr_0379at 409.458 kb on + strand, within Psyr_0379at 409.458 kb on + strand, within Psyr_0379at 409.458 kb on + strand, within Psyr_0379at 409.458 kb on + strand, within Psyr_0379at 409.459 kb on - strand, within Psyr_0379at 409.459 kb on - strand, within Psyr_0379at 409.459 kb on - strand, within Psyr_0379at 409.460 kb on + strand, within Psyr_0379at 409.460 kb on + strand, within Psyr_0379at 409.460 kb on + strand, within Psyr_0379at 409.460 kb on + strand, within Psyr_0379at 409.460 kb on + strand, within Psyr_0379at 409.460 kb on + strand, within Psyr_0379at 409.460 kb on + strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.461 kb on - strand, within Psyr_0379at 409.512 kb on + strand, within Psyr_0379at 409.512 kb on + strand, within Psyr_0379at 409.512 kb on + strand, within Psyr_0379at 409.513 kb on - strand, within Psyr_0379at 409.576 kb on + strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.577 kb on - strand, within Psyr_0379at 409.809 kb on + strand, within Psyr_0379at 409.922 kb on + strandat 409.922 kb on + strandat 409.922 kb on + strandat 409.922 kb on + strandat 409.922 kb on + strandat 409.923 kb on - strandat 409.923 kb on - strandat 409.923 kb on - strandat 409.923 kb on - strandat 409.923 kb on - strandat 410.303 kb on + strandat 410.303 kb on + strandat 410.304 kb on - strandat 410.304 kb on - strandat 410.304 kb on - strandat 410.304 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumaric (C)
remove
407,120 + +0.1
407,120 + -1.2
407,889 - +1.7
408,018 + +2.0
408,053 + -0.3
408,053 + +0.1
408,053 + -0.9
408,053 + -0.8
408,053 + -1.3
408,053 + -0.2
408,053 + -0.3
408,053 + -1.8
408,053 + +1.4
408,054 - -1.5
408,054 - -0.6
408,054 - -0.3
408,054 - +1.7
408,056 - +1.4
408,098 + -0.6
408,098 + +1.2
408,099 - -0.8
408,099 - +0.6
408,099 - -0.2
408,099 - +1.0
408,099 - -0.6
408,218 - +0.4
408,218 - +1.6
408,231 + +0.7
408,985 + Psyr_0379 0.46 -1.9
408,985 + Psyr_0379 0.46 +0.4
408,985 + Psyr_0379 0.46 -0.5
408,985 + Psyr_0379 0.46 +0.4
408,985 + Psyr_0379 0.46 +1.1
408,986 - Psyr_0379 0.46 -0.5
408,986 - Psyr_0379 0.46 -1.0
408,986 - Psyr_0379 0.46 +0.2
408,986 - Psyr_0379 0.46 -0.1
408,986 - Psyr_0379 0.46 -1.3
408,986 - Psyr_0379 0.46 +1.5
409,018 + Psyr_0379 0.47 -0.2
409,019 - Psyr_0379 0.47 +1.4
409,285 + Psyr_0379 0.61 -2.2
409,285 + Psyr_0379 0.61 -0.0
409,286 - Psyr_0379 0.61 -1.3
409,286 - Psyr_0379 0.61 +0.5
409,286 - Psyr_0379 0.61 -0.5
409,458 + Psyr_0379 0.70 +1.0
409,458 + Psyr_0379 0.70 +0.9
409,458 + Psyr_0379 0.70 -0.6
409,458 + Psyr_0379 0.70 +2.2
409,459 - Psyr_0379 0.70 +2.4
409,459 - Psyr_0379 0.70 -0.2
409,459 - Psyr_0379 0.70 -2.6
409,460 + Psyr_0379 0.70 +1.4
409,460 + Psyr_0379 0.70 -0.9
409,460 + Psyr_0379 0.70 -0.3
409,460 + Psyr_0379 0.70 -0.4
409,460 + Psyr_0379 0.70 -0.5
409,460 + Psyr_0379 0.70 +1.0
409,460 + Psyr_0379 0.70 +0.7
409,461 - Psyr_0379 0.70 +0.8
409,461 - Psyr_0379 0.70 -0.2
409,461 - Psyr_0379 0.70 -0.4
409,461 - Psyr_0379 0.70 +0.1
409,461 - Psyr_0379 0.70 +0.1
409,461 - Psyr_0379 0.70 +0.7
409,461 - Psyr_0379 0.70 +0.0
409,461 - Psyr_0379 0.70 -0.5
409,461 - Psyr_0379 0.70 -1.4
409,461 - Psyr_0379 0.70 +0.7
409,461 - Psyr_0379 0.70 +2.0
409,512 + Psyr_0379 0.73 -1.4
409,512 + Psyr_0379 0.73 +0.2
409,512 + Psyr_0379 0.73 +0.2
409,513 - Psyr_0379 0.73 -2.2
409,576 + Psyr_0379 0.76 -0.2
409,577 - Psyr_0379 0.76 +0.2
409,577 - Psyr_0379 0.76 +0.4
409,577 - Psyr_0379 0.76 +1.1
409,577 - Psyr_0379 0.76 +0.7
409,577 - Psyr_0379 0.76 +1.0
409,577 - Psyr_0379 0.76 +1.8
409,577 - Psyr_0379 0.76 +0.1
409,577 - Psyr_0379 0.76 +0.8
409,809 + Psyr_0379 0.88 -1.6
409,922 + +0.1
409,922 + +2.4
409,922 + -0.3
409,922 + +1.1
409,922 + -1.8
409,923 - +2.4
409,923 - +1.1
409,923 - -0.5
409,923 - +1.4
409,923 - +2.2
410,303 + -0.2
410,303 + +2.7
410,304 - +2.0
410,304 - -2.5
410,304 - -0.4
410,304 - +0.1

Or see this region's nucleotide sequence