Experiment: Formate N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04290 and MMP_RS04295 are separated by 90 nucleotides MMP_RS04295 and MMP_RS04300 are separated by 260 nucleotides MMP_RS04300 and MMP_RS04305 are separated by 281 nucleotides
MMP_RS04290: MMP_RS04290 - 4Fe-4S binding protein, at 818,140 to 819,333
_RS04290
MMP_RS04295: MMP_RS04295 - CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein, at 819,424 to 821,388
_RS04295
MMP_RS04300: MMP_RS04300 - hypothetical protein, at 821,649 to 821,915
_RS04300
MMP_RS04305: MMP_RS04305 - hypothetical protein, at 822,197 to 822,490
_RS04305
Position (kb) 819
820
821
822 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 818.506 kb on + strand, within MMP_RS04290 at 818.631 kb on - strand, within MMP_RS04290 at 818.674 kb on + strand, within MMP_RS04290 at 818.766 kb on - strand, within MMP_RS04290 at 818.850 kb on - strand, within MMP_RS04290 at 818.927 kb on - strand, within MMP_RS04290 at 818.972 kb on - strand, within MMP_RS04290 at 819.115 kb on + strand, within MMP_RS04290 at 819.177 kb on + strand, within MMP_RS04290 at 819.448 kb on - strand at 819.621 kb on + strand, within MMP_RS04295 at 819.657 kb on - strand, within MMP_RS04295 at 819.658 kb on + strand, within MMP_RS04295 at 819.789 kb on + strand, within MMP_RS04295 at 819.987 kb on + strand, within MMP_RS04295 at 820.141 kb on - strand, within MMP_RS04295 at 820.194 kb on - strand, within MMP_RS04295 at 820.195 kb on + strand, within MMP_RS04295 at 820.389 kb on - strand, within MMP_RS04295 at 820.390 kb on + strand, within MMP_RS04295 at 820.444 kb on - strand, within MMP_RS04295 at 820.530 kb on + strand, within MMP_RS04295 at 820.635 kb on - strand, within MMP_RS04295 at 820.635 kb on - strand, within MMP_RS04295 at 820.636 kb on + strand, within MMP_RS04295 at 820.639 kb on - strand, within MMP_RS04295 at 820.639 kb on - strand, within MMP_RS04295 at 820.640 kb on + strand, within MMP_RS04295 at 820.695 kb on - strand, within MMP_RS04295 at 820.700 kb on + strand, within MMP_RS04295 at 820.774 kb on + strand, within MMP_RS04295 at 820.802 kb on - strand, within MMP_RS04295 at 820.993 kb on + strand, within MMP_RS04295 at 820.997 kb on - strand, within MMP_RS04295 at 821.029 kb on - strand, within MMP_RS04295 at 821.029 kb on - strand, within MMP_RS04295 at 821.029 kb on - strand, within MMP_RS04295 at 821.029 kb on - strand, within MMP_RS04295 at 821.030 kb on + strand, within MMP_RS04295 at 821.153 kb on - strand, within MMP_RS04295 at 821.187 kb on - strand, within MMP_RS04295 at 821.210 kb on + strand at 821.348 kb on - strand at 821.348 kb on - strand at 821.350 kb on - strand at 821.428 kb on + strand at 821.497 kb on - strand at 821.545 kb on + strand at 821.549 kb on + strand at 821.561 kb on + strand at 821.564 kb on - strand at 821.564 kb on - strand at 821.564 kb on - strand at 821.564 kb on - strand at 821.565 kb on + strand at 821.565 kb on + strand at 821.565 kb on + strand at 821.565 kb on + strand at 821.565 kb on + strand at 821.565 kb on + strand at 821.566 kb on - strand at 821.566 kb on - strand at 821.566 kb on - strand at 821.566 kb on - strand at 821.567 kb on + strand at 821.567 kb on + strand at 821.567 kb on + strand at 821.596 kb on - strand at 821.596 kb on - strand at 821.596 kb on - strand at 821.597 kb on + strand at 821.597 kb on + strand at 821.597 kb on + strand at 821.615 kb on + strand at 821.668 kb on + strand at 821.668 kb on + strand at 821.668 kb on + strand at 821.685 kb on - strand, within MMP_RS04300 at 821.686 kb on + strand, within MMP_RS04300 at 821.706 kb on - strand, within MMP_RS04300 at 821.706 kb on - strand, within MMP_RS04300 at 821.718 kb on + strand, within MMP_RS04300 at 821.734 kb on - strand, within MMP_RS04300 at 821.734 kb on - strand, within MMP_RS04300 at 821.734 kb on - strand, within MMP_RS04300 at 821.735 kb on + strand, within MMP_RS04300 at 821.735 kb on + strand, within MMP_RS04300 at 821.742 kb on + strand, within MMP_RS04300 at 821.746 kb on - strand, within MMP_RS04300 at 821.761 kb on + strand, within MMP_RS04300 at 821.778 kb on + strand, within MMP_RS04300 at 821.853 kb on - strand, within MMP_RS04300 at 821.897 kb on - strand at 821.904 kb on + strand at 821.930 kb on - strand at 821.998 kb on + strand at 821.999 kb on - strand at 821.999 kb on - strand at 821.999 kb on - strand at 822.000 kb on + strand at 822.000 kb on + strand at 822.000 kb on + strand at 822.000 kb on + strand at 822.000 kb on + strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.001 kb on - strand at 822.002 kb on + strand at 822.002 kb on + strand at 822.002 kb on + strand at 822.002 kb on + strand at 822.002 kb on + strand at 822.003 kb on - strand at 822.008 kb on - strand at 822.012 kb on - strand at 822.012 kb on - strand at 822.012 kb on - strand at 822.013 kb on + strand at 822.013 kb on + strand at 822.013 kb on + strand at 822.013 kb on + strand at 822.013 kb on + strand at 822.032 kb on + strand at 822.040 kb on - strand at 822.044 kb on + strand at 822.125 kb on - strand at 822.125 kb on - strand at 822.126 kb on + strand at 822.126 kb on + strand at 822.127 kb on - strand at 822.127 kb on - strand at 822.128 kb on + strand at 822.128 kb on + strand at 822.132 kb on + strand at 822.147 kb on - strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.156 kb on - strand at 822.157 kb on + strand at 822.157 kb on + strand at 822.158 kb on - strand at 822.158 kb on - strand at 822.158 kb on - strand at 822.158 kb on - strand at 822.158 kb on - strand at 822.159 kb on + strand at 822.159 kb on + strand at 822.175 kb on - strand at 822.178 kb on - strand at 822.179 kb on + strand at 822.209 kb on + strand at 822.235 kb on - strand, within MMP_RS04305 at 822.384 kb on - strand, within MMP_RS04305
Per-strain Table
Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine remove 818,506 + MMP_RS04290 0.31 +0.1 818,631 - MMP_RS04290 0.41 -0.4 818,674 + MMP_RS04290 0.45 +0.9 818,766 - MMP_RS04290 0.52 +1.0 818,850 - MMP_RS04290 0.59 -3.6 818,927 - MMP_RS04290 0.66 -1.1 818,972 - MMP_RS04290 0.70 +0.9 819,115 + MMP_RS04290 0.82 -0.7 819,177 + MMP_RS04290 0.87 +1.3 819,448 - -0.8 819,621 + MMP_RS04295 0.10 -0.0 819,657 - MMP_RS04295 0.12 -0.0 819,658 + MMP_RS04295 0.12 -0.2 819,789 + MMP_RS04295 0.19 -1.4 819,987 + MMP_RS04295 0.29 +0.8 820,141 - MMP_RS04295 0.36 -0.1 820,194 - MMP_RS04295 0.39 -1.6 820,195 + MMP_RS04295 0.39 +0.0 820,389 - MMP_RS04295 0.49 -1.6 820,390 + MMP_RS04295 0.49 -0.9 820,444 - MMP_RS04295 0.52 -1.3 820,530 + MMP_RS04295 0.56 +0.7 820,635 - MMP_RS04295 0.62 +0.3 820,635 - MMP_RS04295 0.62 -0.5 820,636 + MMP_RS04295 0.62 +0.1 820,639 - MMP_RS04295 0.62 -0.3 820,639 - MMP_RS04295 0.62 -1.5 820,640 + MMP_RS04295 0.62 +0.5 820,695 - MMP_RS04295 0.65 -0.6 820,700 + MMP_RS04295 0.65 -0.7 820,774 + MMP_RS04295 0.69 +0.8 820,802 - MMP_RS04295 0.70 -1.2 820,993 + MMP_RS04295 0.80 -0.5 820,997 - MMP_RS04295 0.80 -0.2 821,029 - MMP_RS04295 0.82 -0.5 821,029 - MMP_RS04295 0.82 -1.3 821,029 - MMP_RS04295 0.82 -0.4 821,029 - MMP_RS04295 0.82 -1.3 821,030 + MMP_RS04295 0.82 -0.4 821,153 - MMP_RS04295 0.88 -1.1 821,187 - MMP_RS04295 0.90 +0.6 821,210 + -0.4 821,348 - +0.3 821,348 - +1.0 821,350 - -0.7 821,428 + +0.5 821,497 - -0.0 821,545 + -1.1 821,549 + +1.0 821,561 + -0.6 821,564 - +0.5 821,564 - +0.5 821,564 - +0.3 821,564 - -0.3 821,565 + +1.0 821,565 + -0.1 821,565 + -0.3 821,565 + -1.7 821,565 + -0.0 821,565 + +0.7 821,566 - +0.6 821,566 - -1.1 821,566 - -1.5 821,566 - -0.3 821,567 + +0.5 821,567 + +1.5 821,567 + +1.2 821,596 - -0.9 821,596 - -1.3 821,596 - -0.6 821,597 + +0.1 821,597 + +1.3 821,597 + -0.2 821,615 + +1.4 821,668 + +0.9 821,668 + -0.3 821,668 + -1.6 821,685 - MMP_RS04300 0.13 -1.1 821,686 + MMP_RS04300 0.14 +0.1 821,706 - MMP_RS04300 0.21 -0.1 821,706 - MMP_RS04300 0.21 +0.8 821,718 + MMP_RS04300 0.26 -1.6 821,734 - MMP_RS04300 0.32 +0.6 821,734 - MMP_RS04300 0.32 -0.6 821,734 - MMP_RS04300 0.32 +0.6 821,735 + MMP_RS04300 0.32 +0.4 821,735 + MMP_RS04300 0.32 -1.5 821,742 + MMP_RS04300 0.35 -1.1 821,746 - MMP_RS04300 0.36 +0.2 821,761 + MMP_RS04300 0.42 -0.7 821,778 + MMP_RS04300 0.48 -0.5 821,853 - MMP_RS04300 0.76 +1.3 821,897 - +0.7 821,904 + -0.7 821,930 - -0.3 821,998 + +0.9 821,999 - +0.3 821,999 - -0.8 821,999 - -0.9 822,000 + +0.0 822,000 + +0.6 822,000 + +0.7 822,000 + -0.8 822,000 + +0.4 822,001 - +1.0 822,001 - +0.6 822,001 - +0.3 822,001 - -0.3 822,001 - -2.0 822,001 - +0.9 822,001 - +0.5 822,002 + +0.3 822,002 + -0.2 822,002 + +0.2 822,002 + -0.1 822,002 + +0.2 822,003 - +0.7 822,008 - -1.3 822,012 - +1.0 822,012 - +0.7 822,012 - +1.2 822,013 + -0.5 822,013 + +0.3 822,013 + +0.7 822,013 + -1.6 822,013 + +0.4 822,032 + +0.7 822,040 - -0.7 822,044 + +0.2 822,125 - -1.8 822,125 - -0.9 822,126 + -1.4 822,126 + +0.1 822,127 - +0.3 822,127 - +1.0 822,128 + -0.4 822,128 + -0.6 822,132 + -0.4 822,147 - -0.9 822,156 - -1.1 822,156 - -0.1 822,156 - +0.3 822,156 - +0.3 822,156 - +0.2 822,156 - +0.4 822,157 + -0.6 822,157 + -0.6 822,158 - +0.5 822,158 - -1.1 822,158 - +0.4 822,158 - +0.1 822,158 - -0.9 822,159 + +0.9 822,159 + -0.3 822,175 - -0.4 822,178 - +0.6 822,179 + +1.1 822,209 + -1.3 822,235 - MMP_RS04305 0.13 -0.1 822,384 - MMP_RS04305 0.64 +0.6
Or see this region's nucleotide sequence