Experiment: Formate N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02760 and MMP_RS02765 are separated by 4 nucleotides MMP_RS02765 and MMP_RS02770 are separated by 194 nucleotides MMP_RS02770 and MMP_RS02775 are separated by 40 nucleotides
MMP_RS02760: MMP_RS02760 - COG1361 S-layer family protein, at 527,825 to 529,141
_RS02760
MMP_RS02765: MMP_RS02765 - ABC transporter ATP-binding protein, at 529,146 to 529,850
_RS02765
MMP_RS02770: MMP_RS02770 - hypothetical protein, at 530,045 to 530,620
_RS02770
MMP_RS02775: MMP_RS02775 - hypothetical protein, at 530,661 to 531,122
_RS02775
Position (kb) 530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 529.143 kb on + strand at 529.225 kb on - strand, within MMP_RS02765 at 529.442 kb on - strand, within MMP_RS02765 at 529.560 kb on - strand, within MMP_RS02765 at 529.566 kb on + strand, within MMP_RS02765 at 529.578 kb on - strand, within MMP_RS02765 at 529.694 kb on - strand, within MMP_RS02765 at 529.850 kb on - strand at 529.946 kb on + strand at 529.972 kb on + strand at 530.014 kb on - strand at 530.014 kb on - strand at 530.042 kb on - strand at 530.102 kb on + strand at 530.104 kb on - strand, within MMP_RS02770 at 530.104 kb on - strand, within MMP_RS02770 at 530.104 kb on - strand, within MMP_RS02770 at 530.104 kb on - strand, within MMP_RS02770 at 530.434 kb on + strand, within MMP_RS02770 at 530.459 kb on - strand, within MMP_RS02770 at 530.543 kb on + strand, within MMP_RS02770 at 530.597 kb on - strand at 530.632 kb on - strand at 530.634 kb on - strand at 530.662 kb on - strand at 530.786 kb on + strand, within MMP_RS02775 at 530.807 kb on - strand, within MMP_RS02775 at 530.808 kb on + strand, within MMP_RS02775 at 530.852 kb on - strand, within MMP_RS02775 at 530.853 kb on + strand, within MMP_RS02775 at 530.861 kb on - strand, within MMP_RS02775 at 530.873 kb on - strand, within MMP_RS02775 at 530.876 kb on - strand, within MMP_RS02775 at 530.877 kb on + strand, within MMP_RS02775 at 530.880 kb on + strand, within MMP_RS02775 at 530.895 kb on + strand, within MMP_RS02775 at 530.898 kb on - strand, within MMP_RS02775 at 531.000 kb on - strand, within MMP_RS02775 at 531.001 kb on + strand, within MMP_RS02775 at 531.003 kb on - strand, within MMP_RS02775 at 531.003 kb on - strand, within MMP_RS02775 at 531.004 kb on + strand, within MMP_RS02775 at 531.008 kb on - strand, within MMP_RS02775 at 531.008 kb on - strand, within MMP_RS02775 at 531.011 kb on - strand, within MMP_RS02775 at 531.015 kb on - strand, within MMP_RS02775 at 531.135 kb on - strand at 531.165 kb on + strand at 531.222 kb on - strand at 531.242 kb on - strand at 531.254 kb on - strand at 531.270 kb on - strand at 531.271 kb on + strand at 531.271 kb on + strand at 531.280 kb on - strand at 531.286 kb on + strand at 531.301 kb on - strand at 531.348 kb on - strand at 531.445 kb on - strand at 531.463 kb on + strand at 531.465 kb on + strand at 531.525 kb on + strand at 531.525 kb on + strand at 531.525 kb on + strand at 531.526 kb on - strand at 531.527 kb on + strand at 531.529 kb on + strand at 531.529 kb on + strand at 531.531 kb on - strand at 531.531 kb on - strand at 531.531 kb on - strand at 531.532 kb on + strand at 531.584 kb on - strand at 531.591 kb on + strand at 531.604 kb on - strand at 531.605 kb on + strand at 531.605 kb on + strand at 531.605 kb on + strand at 531.605 kb on + strand at 531.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine remove 529,143 + -0.5 529,225 - MMP_RS02765 0.11 +0.5 529,442 - MMP_RS02765 0.42 -0.2 529,560 - MMP_RS02765 0.59 +0.6 529,566 + MMP_RS02765 0.60 -0.5 529,578 - MMP_RS02765 0.61 +0.5 529,694 - MMP_RS02765 0.78 -1.9 529,850 - -1.6 529,946 + -0.9 529,972 + +1.0 530,014 - -0.3 530,014 - +0.3 530,042 - -0.4 530,102 + -0.3 530,104 - MMP_RS02770 0.10 +0.7 530,104 - MMP_RS02770 0.10 -0.7 530,104 - MMP_RS02770 0.10 -0.4 530,104 - MMP_RS02770 0.10 -0.1 530,434 + MMP_RS02770 0.68 -0.8 530,459 - MMP_RS02770 0.72 -0.3 530,543 + MMP_RS02770 0.86 -1.1 530,597 - -1.3 530,632 - +1.2 530,634 - -1.6 530,662 - -1.5 530,786 + MMP_RS02775 0.27 -0.8 530,807 - MMP_RS02775 0.32 -0.8 530,808 + MMP_RS02775 0.32 +0.3 530,852 - MMP_RS02775 0.41 -0.7 530,853 + MMP_RS02775 0.42 +0.5 530,861 - MMP_RS02775 0.43 +1.5 530,873 - MMP_RS02775 0.46 +0.0 530,876 - MMP_RS02775 0.47 -1.0 530,877 + MMP_RS02775 0.47 +1.1 530,880 + MMP_RS02775 0.47 -0.1 530,895 + MMP_RS02775 0.51 +0.1 530,898 - MMP_RS02775 0.51 +0.4 531,000 - MMP_RS02775 0.73 -0.9 531,001 + MMP_RS02775 0.74 +0.0 531,003 - MMP_RS02775 0.74 +0.3 531,003 - MMP_RS02775 0.74 +0.3 531,004 + MMP_RS02775 0.74 +0.5 531,008 - MMP_RS02775 0.75 +0.7 531,008 - MMP_RS02775 0.75 +0.5 531,011 - MMP_RS02775 0.76 -0.3 531,015 - MMP_RS02775 0.77 -1.2 531,135 - +0.5 531,165 + -2.2 531,222 - -0.7 531,242 - -2.1 531,254 - -2.4 531,270 - -2.3 531,271 + +1.2 531,271 + +0.8 531,280 - +0.6 531,286 + -1.1 531,301 - -0.8 531,348 - +0.6 531,445 - +0.6 531,463 + -1.2 531,465 + -1.1 531,525 + +0.8 531,525 + +0.3 531,525 + -3.0 531,526 - -1.6 531,527 + +1.1 531,529 + -0.7 531,529 + -1.0 531,531 - -0.9 531,531 - -0.2 531,531 - -0.2 531,532 + -1.1 531,584 - -0.4 531,591 + -0.5 531,604 - -0.9 531,605 + +0.1 531,605 + +1.5 531,605 + +0.8 531,605 + -0.1 531,613 - -0.6
Or see this region's nucleotide sequence