Experiment: nitrite 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26030 and BWI76_RS26035 are separated by 35 nucleotides BWI76_RS26035 and BWI76_RS26040 overlap by 8 nucleotides BWI76_RS26040 and BWI76_RS26045 overlap by 4 nucleotides BWI76_RS26045 and BWI76_RS26050 are separated by 67 nucleotides
BWI76_RS26030: BWI76_RS26030 - cytosine deaminase, at 5,378,648 to 5,379,970
_RS26030
BWI76_RS26035: BWI76_RS26035 - hypothetical protein, at 5,380,006 to 5,380,218
_RS26035
BWI76_RS26040: BWI76_RS26040 - nitrite reductase large subunit, at 5,380,211 to 5,382,754
_RS26040
BWI76_RS26045: BWI76_RS26045 - nitrite reductase small subunit, at 5,382,751 to 5,383,077
_RS26045
BWI76_RS26050: BWI76_RS26050 - nitrite transporter NirC, at 5,383,145 to 5,383,954
_RS26050
Position (kb) 5380
5381
5382
5383 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5379.217 kb on + strand at 5379.449 kb on - strand, within BWI76_RS26030 at 5379.526 kb on - strand, within BWI76_RS26030 at 5379.580 kb on + strand, within BWI76_RS26030 at 5379.671 kb on - strand, within BWI76_RS26030 at 5379.951 kb on - strand at 5379.971 kb on - strand at 5380.398 kb on - strand at 5380.428 kb on + strand at 5380.428 kb on + strand at 5380.488 kb on + strand, within BWI76_RS26040 at 5380.740 kb on + strand, within BWI76_RS26040 at 5380.878 kb on - strand, within BWI76_RS26040 at 5381.113 kb on + strand, within BWI76_RS26040 at 5381.223 kb on + strand, within BWI76_RS26040 at 5381.223 kb on + strand, within BWI76_RS26040 at 5381.231 kb on - strand, within BWI76_RS26040 at 5381.252 kb on - strand, within BWI76_RS26040 at 5381.433 kb on + strand, within BWI76_RS26040 at 5381.462 kb on + strand, within BWI76_RS26040 at 5381.500 kb on + strand, within BWI76_RS26040 at 5381.663 kb on - strand, within BWI76_RS26040 at 5381.704 kb on - strand, within BWI76_RS26040 at 5381.730 kb on - strand, within BWI76_RS26040 at 5381.777 kb on - strand, within BWI76_RS26040 at 5382.201 kb on - strand, within BWI76_RS26040 at 5382.236 kb on - strand, within BWI76_RS26040 at 5382.285 kb on - strand, within BWI76_RS26040 at 5382.342 kb on + strand, within BWI76_RS26040 at 5382.533 kb on - strand at 5382.859 kb on + strand, within BWI76_RS26045 at 5383.007 kb on - strand, within BWI76_RS26045 at 5383.017 kb on - strand, within BWI76_RS26045 at 5383.124 kb on + strand at 5383.182 kb on - strand at 5383.182 kb on - strand at 5383.254 kb on + strand, within BWI76_RS26050 at 5383.262 kb on - strand, within BWI76_RS26050 at 5383.346 kb on + strand, within BWI76_RS26050 at 5383.354 kb on - strand, within BWI76_RS26050 at 5383.436 kb on - strand, within BWI76_RS26050 at 5383.447 kb on - strand, within BWI76_RS26050 at 5383.629 kb on - strand, within BWI76_RS26050 at 5383.703 kb on + strand, within BWI76_RS26050
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 40 mM remove 5,379,217 + +0.2 5,379,449 - BWI76_RS26030 0.61 +0.8 5,379,526 - BWI76_RS26030 0.66 -0.6 5,379,580 + BWI76_RS26030 0.70 -1.1 5,379,671 - BWI76_RS26030 0.77 -0.4 5,379,951 - -0.3 5,379,971 - -0.5 5,380,398 - -0.3 5,380,428 + -0.1 5,380,428 + +0.2 5,380,488 + BWI76_RS26040 0.11 +0.2 5,380,740 + BWI76_RS26040 0.21 +0.1 5,380,878 - BWI76_RS26040 0.26 -1.7 5,381,113 + BWI76_RS26040 0.35 +0.6 5,381,223 + BWI76_RS26040 0.40 +1.0 5,381,223 + BWI76_RS26040 0.40 +0.3 5,381,231 - BWI76_RS26040 0.40 -0.1 5,381,252 - BWI76_RS26040 0.41 +0.2 5,381,433 + BWI76_RS26040 0.48 +0.9 5,381,462 + BWI76_RS26040 0.49 -0.1 5,381,500 + BWI76_RS26040 0.51 -0.1 5,381,663 - BWI76_RS26040 0.57 -0.1 5,381,704 - BWI76_RS26040 0.59 +0.4 5,381,730 - BWI76_RS26040 0.60 +0.8 5,381,777 - BWI76_RS26040 0.62 -0.1 5,382,201 - BWI76_RS26040 0.78 +1.3 5,382,236 - BWI76_RS26040 0.80 +0.6 5,382,285 - BWI76_RS26040 0.82 -0.0 5,382,342 + BWI76_RS26040 0.84 +1.8 5,382,533 - +0.1 5,382,859 + BWI76_RS26045 0.33 -0.0 5,383,007 - BWI76_RS26045 0.78 -1.8 5,383,017 - BWI76_RS26045 0.81 -0.1 5,383,124 + +1.3 5,383,182 - +0.4 5,383,182 - -0.3 5,383,254 + BWI76_RS26050 0.13 +0.4 5,383,262 - BWI76_RS26050 0.14 +0.5 5,383,346 + BWI76_RS26050 0.25 -0.8 5,383,354 - BWI76_RS26050 0.26 +0.5 5,383,436 - BWI76_RS26050 0.36 -0.2 5,383,447 - BWI76_RS26050 0.37 +2.2 5,383,629 - BWI76_RS26050 0.60 -1.0 5,383,703 + BWI76_RS26050 0.69 -0.2
Or see this region's nucleotide sequence