Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2685

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
3,258,979	+		Psyr_2684	0.27	-0.3
3,258,980	-		Psyr_2684	0.27	-1.1
3,259,132	+		Psyr_2684	0.39	-0.5
3,259,180	+		Psyr_2684	0.43	-0.5
3,259,180	+		Psyr_2684	0.43	+1.8
3,259,180	+		Psyr_2684	0.43	+1.2
3,259,180	+		Psyr_2684	0.43	-0.7
3,259,181	-		Psyr_2684	0.43	+0.9
3,259,184	+		Psyr_2684	0.43	+0.3
3,259,184	+		Psyr_2684	0.43	+1.3
3,259,184	+		Psyr_2684	0.43	-1.1
3,259,184	+		Psyr_2684	0.43	+0.5
3,259,184	+		Psyr_2684	0.43	-0.0
3,259,184	+		Psyr_2684	0.43	+0.7
3,259,184	+		Psyr_2684	0.43	+1.0
3,259,185	-		Psyr_2684	0.43	+0.1
3,259,185	-		Psyr_2684	0.43	-0.1
3,259,185	-		Psyr_2684	0.43	-0.7
3,259,226	-		Psyr_2684	0.46	+0.8
3,259,229	+		Psyr_2684	0.47	+0.9
3,259,229	+		Psyr_2684	0.47	+0.7
3,259,229	+		Psyr_2684	0.47	-2.1
3,259,230	-		Psyr_2684	0.47	+0.1
3,259,230	-		Psyr_2684	0.47	-0.2
3,259,456	+		Psyr_2684	0.65	-2.1
3,259,457	-		Psyr_2684	0.65	-2.3
3,259,521	+		Psyr_2684	0.70	+1.0
3,259,521	+		Psyr_2684	0.70	-0.4
3,259,522	-		Psyr_2684	0.70	+0.5
3,259,522	-		Psyr_2684	0.70	-1.8
3,259,533	+		Psyr_2684	0.71	+1.2
3,259,588	+		Psyr_2684	0.75	+0.9
3,259,594	+		Psyr_2684	0.76	-1.3
3,259,594	+		Psyr_2684	0.76	-0.2
3,259,596	+		Psyr_2684	0.76	-0.3
3,259,596	+		Psyr_2684	0.76	-0.7
3,259,596	+		Psyr_2684	0.76	+0.4
3,259,596	+		Psyr_2684	0.76	+1.0
3,259,596	+		Psyr_2684	0.76	-1.3
3,259,596	+		Psyr_2684	0.76	+1.6
3,259,597	-		Psyr_2684	0.76	-1.4
3,259,597	-		Psyr_2684	0.76	-0.5
3,259,597	-		Psyr_2684	0.76	-0.1
3,259,597	-		Psyr_2684	0.76	-0.5
3,259,597	-		Psyr_2684	0.76	-0.1
3,259,597	-		Psyr_2684	0.76	-0.5
3,259,681	+		Psyr_2684	0.82	-1.2
3,259,681	+		Psyr_2684	0.82	+0.7
3,259,681	+		Psyr_2684	0.82	+0.5
3,259,757	+		Psyr_2684	0.89	+0.0
3,259,768	+		Psyr_2684	0.89	+0.5
3,259,769	-		Psyr_2684	0.89	-2.1
3,259,769	-		Psyr_2684	0.89	+2.8
3,259,772	+		Psyr_2684	0.90	-0.9
3,259,772	+		Psyr_2684	0.90	+1.6
3,259,772	+		Psyr_2684	0.90	-1.0
3,259,773	-		Psyr_2684	0.90	+1.3
3,259,773	-		Psyr_2684	0.90	-0.1
3,259,773	-		Psyr_2684	0.90	-2.8
3,260,073	+		Psyr_2685	0.10	-0.8
3,260,073	+		Psyr_2685	0.10	-1.1
3,260,073	+		Psyr_2685	0.10	-2.5
3,260,073	+		Psyr_2685	0.10	+0.1
3,260,073	+		Psyr_2685	0.10	+0.0
3,260,073	+		Psyr_2685	0.10	+0.3
3,260,074	-		Psyr_2685	0.10	-0.3
3,260,074	-		Psyr_2685	0.10	-0.4
3,260,074	-		Psyr_2685	0.10	-1.5
3,260,076	-		Psyr_2685	0.11	+0.5
3,260,076	-		Psyr_2685	0.11	+2.0
3,260,076	-		Psyr_2685	0.11	+0.9
3,260,076	-		Psyr_2685	0.11	-1.5
3,260,076	-		Psyr_2685	0.11	-0.4
3,260,076	-		Psyr_2685	0.11	-1.0
3,260,113	+		Psyr_2685	0.14	+2.0
3,260,114	-		Psyr_2685	0.14	-0.5
3,260,122	+		Psyr_2685	0.15	-0.1
3,260,196	+		Psyr_2685	0.23	+0.8
3,260,196	+		Psyr_2685	0.23	-1.0
3,260,196	+		Psyr_2685	0.23	-1.9
3,260,196	+		Psyr_2685	0.23	-0.8
3,260,196	+		Psyr_2685	0.23	-0.5
3,260,196	+		Psyr_2685	0.23	-1.4
3,260,196	+		Psyr_2685	0.23	+1.6
3,260,196	+		Psyr_2685	0.23	-0.3
3,260,196	+		Psyr_2685	0.23	-0.5
3,260,196	+		Psyr_2685	0.23	-0.5
3,260,197	-		Psyr_2685	0.23	+0.5
3,260,197	-		Psyr_2685	0.23	-2.0
3,260,197	-		Psyr_2685	0.23	+1.8
3,260,197	-		Psyr_2685	0.23	-0.4
3,260,197	-		Psyr_2685	0.23	-1.0
3,260,197	-		Psyr_2685	0.23	-1.3
3,260,197	-		Psyr_2685	0.23	+1.8
3,260,197	-		Psyr_2685	0.23	-0.5
3,260,197	-		Psyr_2685	0.23	+1.0
3,260,199	-		Psyr_2685	0.23	+1.5
3,260,286	+		Psyr_2685	0.31	-0.5
3,260,395	+		Psyr_2685	0.42	+0.2
3,260,396	-		Psyr_2685	0.42	+0.9
3,260,396	-		Psyr_2685	0.42	+1.5
3,260,396	-		Psyr_2685	0.42	-1.4
3,260,442	+		Psyr_2685	0.47	+1.1
3,260,443	-		Psyr_2685	0.47	+0.5
3,260,443	-		Psyr_2685	0.47	-0.5
3,260,443	-		Psyr_2685	0.47	-0.9
3,260,449	-		Psyr_2685	0.48	-0.1
3,260,449	-		Psyr_2685	0.48	+0.8
3,260,466	+		Psyr_2685	0.49	-1.3
3,260,466	+		Psyr_2685	0.49	-0.8
3,260,658	-		Psyr_2685	0.68	+0.5
3,260,977	-				-1.0
3,261,023	+				-0.9
3,261,023	+				-0.5
3,261,023	+				-1.3
3,261,023	+				-0.5
3,261,023	+				+0.6
3,261,023	+				+0.0
3,261,024	-				+0.7
3,261,024	-				-3.7
3,261,024	-				-0.9
3,261,024	-				+0.5
3,261,024	-				+0.5
3,261,024	-				+0.3
3,261,069	+				+0.2
3,261,069	+				-1.6
3,261,069	+				-1.3
3,261,069	+				+1.6
3,261,069	+				-0.5
3,261,069	+				-0.2
3,261,070	-				+2.0
3,261,070	-				-0.5
3,261,070	-				-0.5
3,261,070	-				-0.1
3,261,070	-				-0.5
3,261,070	-				-1.3
3,261,070	-				-1.5
3,261,072	+				+0.2
3,261,072	+				-0.5
3,261,072	+				+1.1
3,261,072	+				-0.4
3,261,073	-				-1.0
3,261,073	-				-0.4
3,261,073	-				-1.3
3,261,078	+				-0.4
3,261,078	+				+1.4
3,261,079	-				-0.9
3,261,185	+		Psyr_2686	0.12	-0.4
3,261,186	-		Psyr_2686	0.12	-0.1
3,261,186	-		Psyr_2686	0.12	-2.7
3,261,186	-		Psyr_2686	0.12	+1.4
3,261,188	-		Psyr_2686	0.12	-1.5
3,261,233	+		Psyr_2686	0.17	+2.3
3,261,233	+		Psyr_2686	0.17	-0.1
3,261,233	+		Psyr_2686	0.17	-2.2
3,261,234	-		Psyr_2686	0.17	-0.5
3,261,234	-		Psyr_2686	0.17	-0.1
3,261,234	-		Psyr_2686	0.17	+0.2
3,261,234	-		Psyr_2686	0.17	-0.2
3,261,262	+		Psyr_2686	0.20	+0.2
3,261,263	-		Psyr_2686	0.20	-0.2
3,261,293	+		Psyr_2686	0.24	+0.8
3,261,325	+		Psyr_2686	0.27	+1.5
3,261,325	+		Psyr_2686	0.27	-1.1
3,261,326	-		Psyr_2686	0.27	-1.0
3,261,327	+		Psyr_2686	0.27	-0.9
3,261,327	+		Psyr_2686	0.27	+0.6
3,261,328	-		Psyr_2686	0.27	-0.2
3,261,453	-		Psyr_2686	0.41	-1.1
3,261,454	+		Psyr_2686	0.41	-0.1
3,261,454	+		Psyr_2686	0.41	+1.2
3,261,454	+		Psyr_2686	0.41	-1.2
3,261,455	-		Psyr_2686	0.41	+1.2
3,261,455	-		Psyr_2686	0.41	+0.4
3,261,455	-		Psyr_2686	0.41	-1.0
3,261,520	-		Psyr_2686	0.48	-1.1
3,261,520	-		Psyr_2686	0.48	-2.1
3,261,520	-		Psyr_2686	0.48	+0.1
3,261,523	+		Psyr_2686	0.48	+1.9
3,261,524	-		Psyr_2686	0.48	+0.5
3,261,524	-		Psyr_2686	0.48	-0.3
3,261,524	-		Psyr_2686	0.48	-0.5
3,261,552	+		Psyr_2686	0.52	-0.9
3,261,553	-		Psyr_2686	0.52	+0.5
3,261,553	-		Psyr_2686	0.52	+1.0
3,261,553	-		Psyr_2686	0.52	-1.0
3,261,643	+		Psyr_2686	0.61	-0.5
3,261,643	+		Psyr_2686	0.61	+0.9
3,261,643	+		Psyr_2686	0.61	+2.3
3,261,643	+		Psyr_2686	0.61	-2.9
3,261,643	+		Psyr_2686	0.61	+1.5
3,261,643	+		Psyr_2686	0.61	+2.0
3,261,644	-		Psyr_2686	0.61	-0.8
3,261,644	-		Psyr_2686	0.61	-0.9
3,261,644	-		Psyr_2686	0.61	+2.8
3,261,644	-		Psyr_2686	0.61	+2.6
3,261,645	+		Psyr_2686	0.62	-1.1
3,261,767	-		Psyr_2686	0.75	-0.5
3,261,767	-		Psyr_2686	0.75	-0.8