Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1792

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
2,044,338	+		Psyr_1791	0.66	-1.1
2,044,338	+		Psyr_1791	0.66	-0.1
2,044,338	+		Psyr_1791	0.66	+2.2
2,044,339	-		Psyr_1791	0.66	-0.1
2,044,339	-		Psyr_1791	0.66	+1.4
2,044,339	-		Psyr_1791	0.66	-1.1
2,044,339	-		Psyr_1791	0.66	-2.1
2,044,340	+		Psyr_1791	0.66	+1.0
2,044,359	+		Psyr_1791	0.69	+0.9
2,044,360	-		Psyr_1791	0.69	-1.1
2,044,979	+				+0.3
2,045,354	+				-1.1
2,045,393	+				+1.9
2,045,481	+				+1.5
2,045,501	+				-1.7
2,045,501	+				-0.1
2,045,501	+				+1.0
2,045,502	-				-1.9
2,045,502	-				-0.8
2,045,735	+				+0.4
2,045,744	+				+1.4
2,045,744	+				-0.9
2,045,744	+				-0.0
2,045,744	+				-0.1
2,045,745	-				+0.9
2,045,745	-				-1.6
2,045,831	+				-1.2
2,045,832	-				-0.1
2,045,832	-				+0.9
2,046,086	-				-0.8
2,046,086	-				-0.6
2,046,284	+		Psyr_1792	0.12	+0.2
2,046,338	+		Psyr_1792	0.13	-0.4
2,046,338	+		Psyr_1792	0.13	+0.9
2,046,338	+		Psyr_1792	0.13	-1.1
2,046,339	-		Psyr_1792	0.13	+0.6
2,046,339	-		Psyr_1792	0.13	+0.4
2,046,339	-		Psyr_1792	0.13	+0.7
2,046,438	-		Psyr_1792	0.14	-0.8
2,046,442	+		Psyr_1792	0.14	-0.7
2,046,710	+		Psyr_1792	0.17	-0.3
2,046,710	+		Psyr_1792	0.17	-0.5
2,046,711	-		Psyr_1792	0.17	-0.1
2,047,045	+		Psyr_1792	0.20	+1.0
2,047,045	+		Psyr_1792	0.20	+1.3
2,047,045	+		Psyr_1792	0.20	-0.7
2,047,045	+		Psyr_1792	0.20	-1.7
2,047,046	-		Psyr_1792	0.20	+0.1
2,047,046	-		Psyr_1792	0.20	+1.3
2,047,046	-		Psyr_1792	0.20	-1.0
2,047,046	-		Psyr_1792	0.20	+1.0
2,047,046	-		Psyr_1792	0.20	-0.0
2,047,628	+		Psyr_1792	0.27	+0.4
2,047,628	+		Psyr_1792	0.27	+0.1
2,048,141	+		Psyr_1792	0.32	+0.2
2,048,235	+		Psyr_1792	0.33	-1.1
2,048,235	+		Psyr_1792	0.33	-0.6
2,048,235	+		Psyr_1792	0.33	+0.2
2,048,248	+		Psyr_1792	0.34	-0.1
2,048,310	-		Psyr_1792	0.34	+2.9
2,048,357	+		Psyr_1792	0.35	-0.3
2,048,358	-		Psyr_1792	0.35	+0.8
2,048,615	+		Psyr_1792	0.38	+0.3
2,048,616	-		Psyr_1792	0.38	-1.1
2,048,616	-		Psyr_1792	0.38	+0.5
2,048,616	-		Psyr_1792	0.38	-0.1
2,048,616	-		Psyr_1792	0.38	-1.1
2,048,616	-		Psyr_1792	0.38	+0.6
2,048,616	-		Psyr_1792	0.38	+0.9
2,048,913	+		Psyr_1792	0.41	+3.8
2,048,939	+		Psyr_1792	0.41	+1.2
2,048,939	+		Psyr_1792	0.41	+0.9
2,048,939	+		Psyr_1792	0.41	+1.4
2,048,939	+		Psyr_1792	0.41	-1.6
2,048,939	+		Psyr_1792	0.41	+2.6
2,048,940	-		Psyr_1792	0.41	-1.7
2,048,940	-		Psyr_1792	0.41	-0.1
2,048,940	-		Psyr_1792	0.41	+0.4
2,048,949	-		Psyr_1792	0.41	+3.3
2,048,949	-		Psyr_1792	0.41	+0.9
2,048,949	-		Psyr_1792	0.41	+0.9
2,048,949	-		Psyr_1792	0.41	-1.1
2,049,198	+		Psyr_1792	0.44	-2.8
2,049,199	-		Psyr_1792	0.44	+0.2
2,049,199	-		Psyr_1792	0.44	-0.7
2,049,497	+		Psyr_1792	0.47	+0.3
2,049,497	+		Psyr_1792	0.47	-0.6
2,049,497	+		Psyr_1792	0.47	+0.4
2,049,497	+		Psyr_1792	0.47	-0.5
2,049,497	+		Psyr_1792	0.47	+0.7
2,049,498	-		Psyr_1792	0.47	+0.9
2,049,498	-		Psyr_1792	0.47	+0.0
2,049,498	-		Psyr_1792	0.47	+1.7
2,049,551	+		Psyr_1792	0.48	+0.7
2,049,551	+		Psyr_1792	0.48	+1.0
2,049,551	+		Psyr_1792	0.48	+0.4
2,049,551	+		Psyr_1792	0.48	+0.3
2,049,551	+		Psyr_1792	0.48	+0.5
2,049,551	+		Psyr_1792	0.48	+0.4
2,049,551	+		Psyr_1792	0.48	-0.2
2,049,551	+		Psyr_1792	0.48	-0.6
2,049,552	-		Psyr_1792	0.48	-1.3
2,049,552	-		Psyr_1792	0.48	+1.7
2,049,552	-				-1.1
2,049,552	-		Psyr_1792	0.48	+1.4
2,049,704	+		Psyr_1792	0.50	+0.3
2,049,705	-		Psyr_1792	0.50	+1.4
2,049,828	+		Psyr_1792	0.51	-0.7
2,049,828	+		Psyr_1792	0.51	+0.5
2,049,854	+		Psyr_1792	0.51	+0.2
2,049,854	+		Psyr_1792	0.51	+0.4
2,049,855	-		Psyr_1792	0.51	-1.1
2,050,160	+		Psyr_1792	0.55	-1.0
2,050,160	+		Psyr_1792	0.55	+0.4
2,050,160	+		Psyr_1792	0.55	+1.1
2,050,160	+		Psyr_1792	0.55	-0.7
2,050,160	+		Psyr_1792	0.55	-0.7
2,050,160	+		Psyr_1792	0.55	-0.6
2,050,160	+		Psyr_1792	0.55	+1.4
2,050,160	+		Psyr_1792	0.55	-2.0
2,050,160	+		Psyr_1792	0.55	+1.1
2,050,161	-		Psyr_1792	0.55	+1.2
2,050,161	-		Psyr_1792	0.55	+0.6
2,050,161	-		Psyr_1792	0.55	-0.1
2,050,161	-		Psyr_1792	0.55	-1.3
2,050,161	-		Psyr_1792	0.55	+0.1
2,050,161	-		Psyr_1792	0.55	-0.1
2,050,355	+		Psyr_1792	0.57	-0.3
2,050,547	+		Psyr_1792	0.59	+0.2
2,050,547	+		Psyr_1792	0.59	-0.5
2,050,781	+		Psyr_1792	0.62	+1.9
2,050,781	+		Psyr_1792	0.62	+0.2
2,050,832	+		Psyr_1792	0.62	+0.3
2,050,833	-		Psyr_1792	0.62	+1.2
2,050,890	-		Psyr_1792	0.63	+0.9
2,051,959	+		Psyr_1792	0.75	+0.5
2,051,959	+		Psyr_1792	0.75	-1.0
2,051,959	+		Psyr_1792	0.75	-0.4
2,052,099	+		Psyr_1792	0.76	+1.2
2,052,134	+		Psyr_1792	0.77	-0.7
2,052,134	+		Psyr_1792	0.77	-1.0
2,052,135	-		Psyr_1792	0.77	+0.1
2,052,135	-		Psyr_1792	0.77	-1.1
2,052,135	-		Psyr_1792	0.77	-0.7
2,052,135	-		Psyr_1792	0.77	-1.4
2,052,135	-		Psyr_1792	0.77	-0.1
2,052,143	+		Psyr_1792	0.77	-0.9
2,052,144	-		Psyr_1792	0.77	+1.0
2,052,144	-		Psyr_1792	0.77	-0.5
2,052,144	-		Psyr_1792	0.77	+1.4
2,052,205	+		Psyr_1792	0.77	+1.1
2,052,446	+		Psyr_1792	0.80	+1.4
2,052,447	-		Psyr_1792	0.80	-0.1
2,052,447	-		Psyr_1792	0.80	-0.5
2,052,447	-		Psyr_1792	0.80	-0.1
2,052,447	-		Psyr_1792	0.80	-2.1
2,052,447	-		Psyr_1792	0.80	+0.9
2,052,683	+		Psyr_1792	0.83	-1.6
2,052,683	+		Psyr_1792	0.83	-0.4
2,052,683	+		Psyr_1792	0.83	+0.1
2,052,684	-		Psyr_1792	0.83	-1.4
2,052,684	-		Psyr_1792	0.83	+1.1
2,052,737	+		Psyr_1792	0.83	+1.3
2,052,737	+		Psyr_1792	0.83	+0.3
2,052,737	+		Psyr_1792	0.83	+2.1
2,052,737	+		Psyr_1792	0.83	+0.4
2,052,737	+		Psyr_1792	0.83	+0.6
2,052,737	+		Psyr_1792	0.83	+1.4
2,052,737	+		Psyr_1792	0.83	+0.2
2,052,737	+		Psyr_1792	0.83	+2.6
2,052,738	-		Psyr_1792	0.83	+0.1
2,052,738	-		Psyr_1792	0.83	-0.7
2,052,738	-		Psyr_1792	0.83	+0.6
2,052,738	-		Psyr_1792	0.83	+0.7
2,052,738	-		Psyr_1792	0.83	+1.7
2,053,035	+		Psyr_1792	0.86	-0.5
2,053,035	+		Psyr_1792	0.86	-2.7
2,053,036	-		Psyr_1792	0.86	+0.2
2,053,036	-		Psyr_1792	0.86	+0.9
2,053,080	-		Psyr_1792	0.87	-1.7
2,053,103	+		Psyr_1792	0.87	+0.6
2,053,104	-		Psyr_1792	0.87	-0.7
2,053,104	-		Psyr_1792	0.87	-0.5
2,053,104	-		Psyr_1792	0.87	+1.2
2,053,104	-		Psyr_1792	0.87	+0.9
2,053,104	-		Psyr_1792	0.87	+0.1
2,053,123	+		Psyr_1792	0.87	-1.1
2,053,433	+				-2.1
2,053,736	+				-0.9
2,053,737	-				-1.7
2,053,778	+				+1.8
2,053,778	+				+0.8
2,053,779	-				+0.0
2,053,779	-				-0.7
2,053,779	-				+0.6
2,053,784	+				+0.1
2,053,784	+				-0.1
2,053,784	+				-0.3
2,053,784	+				-0.8
2,053,784	+				+1.3
2,053,785	-				+0.9
2,053,785	-				+0.3
2,053,827	-				-0.6
2,053,829	+				-0.4
2,053,829	+				-1.9
2,053,829	+				+0.9
2,053,829	+				+0.3
2,053,829	+				+1.2
2,053,829	+				-1.7
2,053,830	-				+2.4
2,053,830	-				+0.9
2,053,832	+				-0.3
2,053,833	-				-1.0
2,053,892	+				+0.6
2,053,892	+				-0.3
2,053,892	+				+0.2
2,053,893	-				-0.5
2,053,893	-				-1.8
2,053,893	-				+2.2
2,053,893	-				+1.9
2,053,898	+				-0.6
2,053,898	+				-0.2
2,053,899	-				+0.1
2,053,919	+				-0.7
2,053,919	+				-1.1
2,053,920	-				-0.8
2,053,920	-				-0.4
2,053,980	-				-1.7
2,054,009	-				+0.3
2,054,253	+				-0.3
2,054,254	-				+1.4
2,054,260	-				+1.7
2,054,260	-				+0.7
2,054,260	-				+0.1
2,054,260	-				-1.7
2,054,270	-				-0.7
2,054,533	+				+1.3
2,054,533	+				+1.1
2,054,533	+				+0.9
2,054,533	+				+0.4
2,054,533	+				+1.1
2,054,534	-				-0.1
2,054,534	-				-0.5
2,054,534	-				+1.9
2,054,624	+				-0.1
2,054,624	+				+1.2
2,054,624	+				+1.2
2,054,624	+				+0.4
2,054,842	+		Psyr_1793	0.14	+0.4
2,054,843	-		Psyr_1793	0.14	-0.2
2,054,843	-		Psyr_1793	0.14	+0.9
2,054,843	-		Psyr_1793	0.14	+0.2
2,054,843	-		Psyr_1793	0.14	-0.3
2,054,855	-		Psyr_1793	0.14	+0.4