Experiment: 4-Aminobutyric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1571 and Psyr_1572 are separated by 86 nucleotides Psyr_1572 and Psyr_1573 are separated by 66 nucleotides Psyr_1573 and Psyr_1574 are separated by 76 nucleotides
Psyr_1571: Psyr_1571 - Twin-arginine translocation pathway signal:Copper-resistance protein CopA, at 1,765,724 to 1,767,502
_1571
Psyr_1572: Psyr_1572 - HNH endonuclease, at 1,767,589 to 1,767,963
_1572
Psyr_1573: Psyr_1573 - cyclic nucleotide-binding protein, at 1,768,030 to 1,768,506
_1573
Psyr_1574: Psyr_1574 - oligopeptidase B, Serine peptidase, MEROPS family S09A, at 1,768,583 to 1,770,643
_1574
Position (kb) 1767
1768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1766.625 kb on - strand, within Psyr_1571 at 1766.647 kb on + strand, within Psyr_1571 at 1766.647 kb on + strand, within Psyr_1571 at 1766.648 kb on - strand, within Psyr_1571 at 1766.661 kb on + strand, within Psyr_1571 at 1766.661 kb on + strand, within Psyr_1571 at 1766.661 kb on + strand, within Psyr_1571 at 1766.661 kb on + strand, within Psyr_1571 at 1766.760 kb on + strand, within Psyr_1571 at 1766.760 kb on + strand, within Psyr_1571 at 1766.760 kb on + strand, within Psyr_1571 at 1766.761 kb on - strand, within Psyr_1571 at 1766.766 kb on + strand, within Psyr_1571 at 1766.766 kb on + strand, within Psyr_1571 at 1766.766 kb on + strand, within Psyr_1571 at 1766.767 kb on - strand, within Psyr_1571 at 1766.767 kb on - strand, within Psyr_1571 at 1766.767 kb on - strand, within Psyr_1571 at 1766.767 kb on - strand, within Psyr_1571 at 1766.767 kb on - strand, within Psyr_1571 at 1766.767 kb on - strand, within Psyr_1571 at 1766.767 kb on - strand, within Psyr_1571 at 1766.767 kb on - strand, within Psyr_1571 at 1766.767 kb on - strand, within Psyr_1571 at 1766.900 kb on - strand, within Psyr_1571 at 1766.907 kb on + strand, within Psyr_1571 at 1766.907 kb on + strand, within Psyr_1571 at 1766.908 kb on - strand, within Psyr_1571 at 1766.908 kb on - strand, within Psyr_1571 at 1766.908 kb on - strand, within Psyr_1571 at 1766.910 kb on + strand, within Psyr_1571 at 1766.997 kb on + strand, within Psyr_1571 at 1767.087 kb on + strand, within Psyr_1571 at 1767.087 kb on + strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.088 kb on - strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.123 kb on + strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.124 kb on - strand, within Psyr_1571 at 1767.354 kb on + strand at 1767.354 kb on + strand at 1767.354 kb on + strand at 1767.354 kb on + strand at 1767.354 kb on + strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.355 kb on - strand at 1767.511 kb on - strand at 1767.591 kb on - strand at 1767.591 kb on - strand at 1767.683 kb on + strand, within Psyr_1572 at 1767.683 kb on + strand, within Psyr_1572 at 1767.684 kb on - strand, within Psyr_1572 at 1767.684 kb on - strand, within Psyr_1572 at 1767.725 kb on + strand, within Psyr_1572 at 1767.726 kb on - strand, within Psyr_1572 at 1767.794 kb on - strand, within Psyr_1572 at 1767.794 kb on - strand, within Psyr_1572 at 1767.794 kb on - strand, within Psyr_1572 at 1767.858 kb on - strand, within Psyr_1572 at 1767.858 kb on - strand, within Psyr_1572 at 1768.048 kb on + strand at 1768.048 kb on + strand at 1768.048 kb on + strand at 1768.048 kb on + strand at 1768.048 kb on + strand at 1768.049 kb on - strand at 1768.049 kb on - strand at 1768.049 kb on - strand at 1768.049 kb on - strand at 1768.049 kb on - strand at 1768.049 kb on - strand at 1768.171 kb on + strand, within Psyr_1573 at 1768.171 kb on + strand, within Psyr_1573 at 1768.171 kb on + strand, within Psyr_1573 at 1768.195 kb on - strand, within Psyr_1573 at 1768.195 kb on - strand, within Psyr_1573 at 1768.408 kb on + strand, within Psyr_1573 at 1768.414 kb on - strand, within Psyr_1573 at 1768.509 kb on + strand at 1768.509 kb on + strand at 1768.509 kb on + strand at 1768.509 kb on + strand at 1768.509 kb on + strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.510 kb on - strand at 1768.518 kb on + strand at 1768.556 kb on + strand at 1768.557 kb on - strand at 1768.557 kb on - strand at 1768.557 kb on - strand at 1768.557 kb on - strand at 1768.560 kb on - strand at 1768.560 kb on - strand at 1768.560 kb on - strand at 1768.560 kb on - strand at 1768.560 kb on - strand at 1768.601 kb on + strand at 1768.601 kb on + strand at 1768.613 kb on - strand at 1768.613 kb on - strand at 1768.761 kb on + strand at 1768.761 kb on + strand at 1768.860 kb on + strand, within Psyr_1574 at 1768.943 kb on + strand, within Psyr_1574 at 1768.943 kb on + strand, within Psyr_1574 at 1768.943 kb on + strand, within Psyr_1574 at 1768.943 kb on + strand, within Psyr_1574 at 1768.943 kb on + strand, within Psyr_1574 at 1768.944 kb on - strand, within Psyr_1574 at 1768.944 kb on - strand, within Psyr_1574 at 1768.944 kb on - strand, within Psyr_1574 at 1768.944 kb on - strand, within Psyr_1574 at 1768.944 kb on - strand, within Psyr_1574
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Aminobutyric (C) remove 1,766,625 - Psyr_1571 0.51 +1.5 1,766,647 + Psyr_1571 0.52 +0.9 1,766,647 + Psyr_1571 0.52 -0.5 1,766,648 - Psyr_1571 0.52 +0.5 1,766,661 + Psyr_1571 0.53 +1.7 1,766,661 + Psyr_1571 0.53 -0.4 1,766,661 + Psyr_1571 0.53 -0.5 1,766,661 + Psyr_1571 0.53 +0.4 1,766,760 + Psyr_1571 0.58 +0.9 1,766,760 + Psyr_1571 0.58 -0.7 1,766,760 + Psyr_1571 0.58 +1.7 1,766,761 - Psyr_1571 0.58 +0.2 1,766,766 + Psyr_1571 0.59 +1.1 1,766,766 + Psyr_1571 0.59 -0.1 1,766,766 + Psyr_1571 0.59 -0.1 1,766,767 - Psyr_1571 0.59 -1.1 1,766,767 - Psyr_1571 0.59 -0.1 1,766,767 - Psyr_1571 0.59 -0.8 1,766,767 - Psyr_1571 0.59 -1.1 1,766,767 - Psyr_1571 0.59 +0.7 1,766,767 - Psyr_1571 0.59 -1.2 1,766,767 - Psyr_1571 0.59 -0.2 1,766,767 - Psyr_1571 0.59 +1.9 1,766,767 - Psyr_1571 0.59 +0.5 1,766,900 - Psyr_1571 0.66 +0.4 1,766,907 + Psyr_1571 0.66 -2.1 1,766,907 + Psyr_1571 0.66 -0.5 1,766,908 - Psyr_1571 0.67 +0.3 1,766,908 - Psyr_1571 0.67 +0.5 1,766,908 - Psyr_1571 0.67 +0.5 1,766,910 + Psyr_1571 0.67 -2.3 1,766,997 + Psyr_1571 0.72 -0.1 1,767,087 + Psyr_1571 0.77 -2.3 1,767,087 + Psyr_1571 0.77 +0.2 1,767,088 - Psyr_1571 0.77 -2.1 1,767,088 - Psyr_1571 0.77 +0.5 1,767,088 - Psyr_1571 0.77 +0.3 1,767,088 - Psyr_1571 0.77 -1.1 1,767,088 - Psyr_1571 0.77 +0.3 1,767,088 - Psyr_1571 0.77 -0.6 1,767,088 - Psyr_1571 0.77 -0.0 1,767,088 - Psyr_1571 0.77 +0.2 1,767,123 + Psyr_1571 0.79 -0.4 1,767,123 + Psyr_1571 0.79 -0.4 1,767,123 + Psyr_1571 0.79 -0.1 1,767,123 + Psyr_1571 0.79 +0.9 1,767,123 + Psyr_1571 0.79 -0.5 1,767,123 + Psyr_1571 0.79 -0.8 1,767,123 + Psyr_1571 0.79 +0.3 1,767,123 + Psyr_1571 0.79 -1.1 1,767,123 + Psyr_1571 0.79 -2.7 1,767,123 + Psyr_1571 0.79 -0.5 1,767,123 + Psyr_1571 0.79 +1.3 1,767,123 + Psyr_1571 0.79 -0.1 1,767,123 + Psyr_1571 0.79 +0.2 1,767,123 + Psyr_1571 0.79 +0.7 1,767,123 + Psyr_1571 0.79 -1.0 1,767,123 + Psyr_1571 0.79 -0.5 1,767,123 + Psyr_1571 0.79 -0.3 1,767,123 + Psyr_1571 0.79 -0.2 1,767,123 + Psyr_1571 0.79 -0.5 1,767,123 + Psyr_1571 0.79 +0.3 1,767,123 + Psyr_1571 0.79 +0.1 1,767,123 + Psyr_1571 0.79 +0.1 1,767,123 + Psyr_1571 0.79 +0.2 1,767,123 + Psyr_1571 0.79 -1.6 1,767,123 + Psyr_1571 0.79 -0.0 1,767,123 + Psyr_1571 0.79 -0.9 1,767,123 + Psyr_1571 0.79 -1.7 1,767,123 + Psyr_1571 0.79 +0.3 1,767,123 + Psyr_1571 0.79 +0.2 1,767,123 + Psyr_1571 0.79 +0.9 1,767,123 + Psyr_1571 0.79 +0.9 1,767,123 + Psyr_1571 0.79 +2.2 1,767,123 + Psyr_1571 0.79 +0.9 1,767,123 + Psyr_1571 0.79 +1.7 1,767,123 + Psyr_1571 0.79 -0.6 1,767,123 + Psyr_1571 0.79 +1.5 1,767,123 + Psyr_1571 0.79 +1.5 1,767,124 - Psyr_1571 0.79 +0.6 1,767,124 - Psyr_1571 0.79 +0.0 1,767,124 - Psyr_1571 0.79 -0.3 1,767,124 - Psyr_1571 0.79 -1.6 1,767,124 - Psyr_1571 0.79 +1.3 1,767,124 - Psyr_1571 0.79 +0.1 1,767,124 - Psyr_1571 0.79 +1.9 1,767,124 - Psyr_1571 0.79 +0.9 1,767,124 - Psyr_1571 0.79 +2.1 1,767,124 - Psyr_1571 0.79 +0.7 1,767,124 - Psyr_1571 0.79 -0.1 1,767,124 - Psyr_1571 0.79 -0.2 1,767,124 - Psyr_1571 0.79 +0.4 1,767,124 - Psyr_1571 0.79 -0.1 1,767,124 - +0.9 1,767,124 - Psyr_1571 0.79 -0.5 1,767,124 - Psyr_1571 0.79 +0.4 1,767,124 - Psyr_1571 0.79 -2.1 1,767,124 - Psyr_1571 0.79 +0.7 1,767,124 - Psyr_1571 0.79 -0.7 1,767,124 - Psyr_1571 0.79 +0.2 1,767,124 - Psyr_1571 0.79 +0.9 1,767,124 - Psyr_1571 0.79 -0.1 1,767,124 - Psyr_1571 0.79 -0.1 1,767,124 - Psyr_1571 0.79 +0.5 1,767,124 - Psyr_1571 0.79 +0.5 1,767,124 - Psyr_1571 0.79 +1.2 1,767,124 - Psyr_1571 0.79 +1.2 1,767,124 - Psyr_1571 0.79 -1.7 1,767,124 - Psyr_1571 0.79 +0.2 1,767,124 - Psyr_1571 0.79 +2.5 1,767,124 - Psyr_1571 0.79 +1.0 1,767,124 - Psyr_1571 0.79 -0.7 1,767,124 - Psyr_1571 0.79 -0.6 1,767,124 - Psyr_1571 0.79 +0.6 1,767,124 - Psyr_1571 0.79 -1.1 1,767,124 - Psyr_1571 0.79 -1.4 1,767,124 - Psyr_1571 0.79 +0.6 1,767,124 - Psyr_1571 0.79 +1.5 1,767,124 - Psyr_1571 0.79 +0.0 1,767,124 - Psyr_1571 0.79 -1.3 1,767,124 - Psyr_1571 0.79 -1.2 1,767,124 - Psyr_1571 0.79 +0.5 1,767,124 - Psyr_1571 0.79 -1.1 1,767,124 - Psyr_1571 0.79 -0.7 1,767,124 - Psyr_1571 0.79 -1.1 1,767,354 + +1.8 1,767,354 + +0.7 1,767,354 + -0.0 1,767,354 + +0.7 1,767,354 + -1.1 1,767,355 - -0.7 1,767,355 - -0.4 1,767,355 - +0.5 1,767,355 - +0.9 1,767,355 - -1.1 1,767,355 - -1.7 1,767,355 - +0.6 1,767,355 - -0.9 1,767,355 - -0.1 1,767,355 - -0.9 1,767,355 - -0.7 1,767,355 - +0.5 1,767,511 - -0.5 1,767,591 - +0.4 1,767,591 - -2.9 1,767,683 + Psyr_1572 0.25 -0.1 1,767,683 + Psyr_1572 0.25 +2.1 1,767,684 - Psyr_1572 0.25 +2.7 1,767,684 - Psyr_1572 0.25 +0.1 1,767,725 + Psyr_1572 0.36 +0.0 1,767,726 - Psyr_1572 0.37 +0.7 1,767,794 - Psyr_1572 0.55 +0.3 1,767,794 - Psyr_1572 0.55 +1.5 1,767,794 - Psyr_1572 0.55 +1.4 1,767,858 - Psyr_1572 0.72 +0.4 1,767,858 - Psyr_1572 0.72 +0.7 1,768,048 + +0.9 1,768,048 + -1.3 1,768,048 + +0.4 1,768,048 + -1.3 1,768,048 + -0.7 1,768,049 - +1.5 1,768,049 - +3.2 1,768,049 - -2.4 1,768,049 - +1.9 1,768,049 - -0.5 1,768,049 - -0.9 1,768,171 + Psyr_1573 0.30 +2.2 1,768,171 + Psyr_1573 0.30 +0.2 1,768,171 + Psyr_1573 0.30 +0.6 1,768,195 - Psyr_1573 0.35 -1.7 1,768,195 - Psyr_1573 0.35 +0.2 1,768,408 + Psyr_1573 0.79 +0.9 1,768,414 - Psyr_1573 0.81 -3.1 1,768,509 + -0.1 1,768,509 + -0.1 1,768,509 + +0.3 1,768,509 + +1.6 1,768,509 + +1.0 1,768,510 - +0.6 1,768,510 - +2.2 1,768,510 - +0.3 1,768,510 - -0.1 1,768,510 - -0.9 1,768,510 - -2.4 1,768,510 - +0.9 1,768,510 - +0.0 1,768,510 - -1.1 1,768,510 - +1.9 1,768,518 + +0.6 1,768,556 + +0.6 1,768,557 - +0.4 1,768,557 - -0.1 1,768,557 - -1.4 1,768,557 - -2.6 1,768,560 - -0.1 1,768,560 - +1.5 1,768,560 - -0.9 1,768,560 - +2.9 1,768,560 - -0.6 1,768,601 + -1.1 1,768,601 + -1.4 1,768,613 - +0.8 1,768,613 - +1.9 1,768,761 + +0.8 1,768,761 + +0.9 1,768,860 + Psyr_1574 0.13 +0.3 1,768,943 + Psyr_1574 0.17 +3.0 1,768,943 + Psyr_1574 0.17 +2.5 1,768,943 + Psyr_1574 0.17 -0.5 1,768,943 + Psyr_1574 0.17 -0.1 1,768,943 + Psyr_1574 0.17 -3.3 1,768,944 - Psyr_1574 0.18 +1.9 1,768,944 - Psyr_1574 0.18 -0.1 1,768,944 - Psyr_1574 0.18 -0.1 1,768,944 - Psyr_1574 0.18 -0.4 1,768,944 - Psyr_1574 0.18 -1.1
Or see this region's nucleotide sequence