Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0384

Experiment: 4-Aminobutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0382 and Psyr_0383 overlap by 4 nucleotidesPsyr_0383 and Psyr_0384 are separated by 4 nucleotidesPsyr_0384 and Psyr_0385 are separated by 44 nucleotidesPsyr_0385 and Psyr_0386 are separated by 2 nucleotidesPsyr_0386 and Psyr_0387 are separated by 67 nucleotides Psyr_0382: Psyr_0382 - Sec-independent periplasmic protein translocase, at 412,955 to 413,755 _0382 Psyr_0383: Psyr_0383 - Twin-arginine translocation protein TatB, at 413,752 to 414,228 _0383 Psyr_0384: Psyr_0384 - Twin-arginine translocation protein TatA/E, at 414,233 to 414,508 _0384 Psyr_0385: Psyr_0385 - phosphoribosyl-ATP pyrophosphatase, at 414,553 to 414,885 _0385 Psyr_0386: Psyr_0386 - phosphoribosyl-AMP cyclohydrolase, at 414,888 to 415,280 _0386 Psyr_0387: Psyr_0387 - 2-octaprenylphenol hydroxylase, at 415,348 to 416,967 _0387 Position (kb) 414 415Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 413.617 kb on - strand, within Psyr_0382at 413.635 kb on - strand, within Psyr_0382at 414.028 kb on - strand, within Psyr_0383at 414.028 kb on - strand, within Psyr_0383at 414.028 kb on - strand, within Psyr_0383at 414.128 kb on - strand, within Psyr_0383at 414.459 kb on - strand, within Psyr_0384at 414.459 kb on - strand, within Psyr_0384at 414.693 kb on - strand, within Psyr_0385at 414.815 kb on + strand, within Psyr_0385at 414.815 kb on + strand, within Psyr_0385at 414.815 kb on + strand, within Psyr_0385at 414.816 kb on - strand, within Psyr_0385at 414.816 kb on - strand, within Psyr_0385at 414.816 kb on - strand, within Psyr_0385at 414.816 kb on - strand, within Psyr_0385at 414.816 kb on - strand, within Psyr_0385at 414.877 kb on - strandat 414.877 kb on - strandat 414.877 kb on - strandat 414.877 kb on - strandat 414.877 kb on - strandat 414.905 kb on - strandat 414.905 kb on - strandat 414.905 kb on - strandat 414.909 kb on - strandat 414.909 kb on - strandat 414.909 kb on - strandat 414.909 kb on - strandat 414.909 kb on - strandat 414.909 kb on - strandat 414.909 kb on - strandat 414.909 kb on - strandat 414.937 kb on - strand, within Psyr_0386at 415.132 kb on + strand, within Psyr_0386at 415.133 kb on - strand, within Psyr_0386at 415.133 kb on - strand, within Psyr_0386at 415.133 kb on - strand, within Psyr_0386at 415.133 kb on - strand, within Psyr_0386at 415.133 kb on - strand, within Psyr_0386at 415.133 kb on - strand, within Psyr_0386at 415.133 kb on - strand, within Psyr_0386at 415.133 kb on - strand, within Psyr_0386at 415.133 kb on - strand, within Psyr_0386at 415.280 kb on + strandat 415.281 kb on - strandat 415.281 kb on - strandat 415.281 kb on - strandat 415.281 kb on - strandat 415.281 kb on - strandat 415.281 kb on - strandat 415.281 kb on - strandat 415.281 kb on - strandat 415.285 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Aminobutyric (C)
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413,617 - Psyr_0382 0.83 -1.7
413,635 - Psyr_0382 0.85 +0.3
414,028 - Psyr_0383 0.58 +2.9
414,028 - Psyr_0383 0.58 -2.5
414,028 - Psyr_0383 0.58 -1.3
414,128 - Psyr_0383 0.79 -0.7
414,459 - Psyr_0384 0.82 -1.7
414,459 - Psyr_0384 0.82 +0.3
414,693 - Psyr_0385 0.42 -0.3
414,815 + Psyr_0385 0.79 +0.3
414,815 + Psyr_0385 0.79 -1.7
414,815 + Psyr_0385 0.79 +0.3
414,816 - Psyr_0385 0.79 -0.5
414,816 - Psyr_0385 0.79 -1.3
414,816 - Psyr_0385 0.79 -2.5
414,816 - Psyr_0385 0.79 -2.7
414,816 - Psyr_0385 0.79 -3.8
414,877 - -2.7
414,877 - -0.5
414,877 - -1.3
414,877 - -3.2
414,877 - -3.3
414,905 - +1.0
414,905 - +0.3
414,905 - -0.5
414,909 - +0.3
414,909 - -1.3
414,909 - -0.2
414,909 - +0.3
414,909 - -0.4
414,909 - -2.5
414,909 - -0.2
414,909 - +0.5
414,937 - Psyr_0386 0.12 +0.1
415,132 + Psyr_0386 0.62 -0.7
415,133 - Psyr_0386 0.62 -3.6
415,133 - Psyr_0386 0.62 -2.0
415,133 - Psyr_0386 0.62 -0.7
415,133 - Psyr_0386 0.62 -0.7
415,133 - Psyr_0386 0.62 -3.4
415,133 - Psyr_0386 0.62 +0.3
415,133 - Psyr_0386 0.62 -1.7
415,133 - Psyr_0386 0.62 -4.2
415,133 - Psyr_0386 0.62 -4.2
415,280 + -0.7
415,281 - -0.7
415,281 - +0.5
415,281 - -1.3
415,281 - -2.5
415,281 - +1.3
415,281 - -2.7
415,281 - -1.4
415,281 - +0.2
415,285 - -0.5

Or see this region's nucleotide sequence