Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0042

Experiment: 4-Aminobutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0039 and Psyr_0040 are separated by 212 nucleotidesPsyr_0040 and Psyr_0041 are separated by 118 nucleotidesPsyr_0041 and Psyr_0042 are separated by 0 nucleotidesPsyr_0042 and Psyr_0043 are separated by 33 nucleotides Psyr_0039: Psyr_0039 - luciferase, at 41,484 to 42,485 _0039 Psyr_0040: Psyr_0040 - OsmC-like protein, at 42,698 to 43,129 _0040 Psyr_0041: Psyr_0041 - Protein of unknown function DUF1161, at 43,248 to 43,481 _0041 Psyr_0042: Psyr_0042 - lipoprotein, putative, at 43,482 to 43,970 _0042 Psyr_0043: Psyr_0043 - conserved hypothetical protein, at 44,004 to 45,059 _0043 Position (kb) 43 44Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 42.659 kb on + strandat 42.660 kb on - strandat 42.798 kb on - strand, within Psyr_0040at 42.798 kb on - strand, within Psyr_0040at 42.935 kb on - strand, within Psyr_0040at 42.963 kb on + strand, within Psyr_0040at 42.963 kb on + strand, within Psyr_0040at 42.963 kb on + strand, within Psyr_0040at 42.963 kb on + strand, within Psyr_0040at 42.963 kb on + strand, within Psyr_0040at 42.963 kb on + strand, within Psyr_0040at 42.963 kb on + strand, within Psyr_0040at 42.964 kb on - strand, within Psyr_0040at 42.964 kb on - strand, within Psyr_0040at 42.964 kb on - strand, within Psyr_0040at 43.114 kb on + strandat 43.114 kb on + strandat 43.114 kb on + strandat 43.114 kb on + strandat 43.115 kb on - strandat 43.115 kb on - strandat 43.115 kb on - strandat 43.115 kb on - strandat 43.115 kb on - strandat 43.115 kb on - strandat 43.169 kb on + strandat 43.169 kb on + strandat 43.170 kb on - strandat 43.170 kb on - strandat 43.178 kb on + strandat 43.178 kb on + strandat 43.178 kb on + strandat 43.178 kb on + strandat 43.178 kb on + strandat 43.178 kb on + strandat 43.178 kb on + strandat 43.179 kb on - strandat 43.179 kb on - strandat 43.179 kb on - strandat 43.180 kb on + strandat 43.180 kb on + strandat 43.180 kb on + strandat 43.180 kb on + strandat 43.181 kb on - strandat 43.181 kb on - strandat 43.181 kb on - strandat 43.230 kb on + strandat 43.230 kb on + strandat 43.260 kb on - strandat 43.374 kb on + strand, within Psyr_0041at 43.374 kb on + strand, within Psyr_0041at 43.375 kb on - strand, within Psyr_0041at 43.394 kb on + strand, within Psyr_0041at 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.461 kb on + strandat 43.462 kb on - strandat 43.462 kb on - strandat 43.462 kb on - strandat 43.462 kb on - strandat 43.462 kb on - strandat 43.462 kb on - strandat 43.544 kb on - strand, within Psyr_0042at 43.578 kb on + strand, within Psyr_0042at 43.591 kb on + strand, within Psyr_0042at 43.591 kb on + strand, within Psyr_0042at 43.591 kb on + strand, within Psyr_0042at 43.591 kb on + strand, within Psyr_0042at 43.591 kb on + strand, within Psyr_0042at 43.592 kb on - strand, within Psyr_0042at 43.592 kb on - strand, within Psyr_0042at 43.633 kb on + strand, within Psyr_0042at 43.634 kb on - strand, within Psyr_0042at 43.634 kb on - strand, within Psyr_0042at 43.651 kb on + strand, within Psyr_0042at 43.651 kb on + strand, within Psyr_0042at 43.693 kb on + strand, within Psyr_0042at 43.693 kb on + strand, within Psyr_0042at 43.693 kb on + strand, within Psyr_0042at 43.694 kb on - strand, within Psyr_0042at 43.694 kb on - strand, within Psyr_0042at 43.694 kb on - strand, within Psyr_0042at 43.694 kb on - strand, within Psyr_0042at 43.694 kb on - strand, within Psyr_0042at 43.694 kb on - strand, within Psyr_0042at 43.694 kb on - strand, within Psyr_0042at 43.699 kb on + strand, within Psyr_0042at 43.699 kb on + strand, within Psyr_0042at 43.704 kb on + strand, within Psyr_0042at 43.704 kb on + strand, within Psyr_0042at 43.704 kb on + strand, within Psyr_0042at 43.704 kb on + strand, within Psyr_0042at 43.704 kb on + strand, within Psyr_0042at 43.705 kb on - strand, within Psyr_0042at 43.705 kb on - strand, within Psyr_0042at 43.705 kb on - strand, within Psyr_0042at 43.705 kb on - strand, within Psyr_0042at 43.705 kb on - strand, within Psyr_0042at 43.741 kb on + strand, within Psyr_0042at 43.741 kb on + strand, within Psyr_0042at 43.753 kb on + strand, within Psyr_0042at 43.753 kb on + strand, within Psyr_0042at 43.753 kb on + strand, within Psyr_0042at 43.753 kb on + strand, within Psyr_0042at 43.753 kb on + strand, within Psyr_0042at 43.754 kb on - strand, within Psyr_0042at 43.754 kb on - strand, within Psyr_0042at 43.878 kb on + strand, within Psyr_0042at 43.878 kb on + strand, within Psyr_0042at 43.878 kb on + strand, within Psyr_0042at 43.878 kb on + strand, within Psyr_0042at 43.879 kb on - strand, within Psyr_0042at 43.879 kb on - strand, within Psyr_0042at 43.879 kb on - strand, within Psyr_0042at 43.879 kb on - strand, within Psyr_0042at 43.879 kb on - strand, within Psyr_0042at 43.942 kb on + strandat 43.966 kb on - strandat 43.966 kb on - strandat 43.984 kb on + strandat 43.984 kb on + strandat 44.088 kb on + strandat 44.088 kb on + strandat 44.088 kb on + strandat 44.091 kb on + strandat 44.092 kb on - strandat 44.092 kb on - strandat 44.268 kb on + strand, within Psyr_0043at 44.269 kb on - strand, within Psyr_0043at 44.289 kb on + strand, within Psyr_0043at 44.289 kb on + strand, within Psyr_0043at 44.289 kb on + strand, within Psyr_0043at 44.289 kb on + strand, within Psyr_0043at 44.289 kb on + strand, within Psyr_0043at 44.289 kb on + strand, within Psyr_0043at 44.290 kb on - strand, within Psyr_0043at 44.290 kb on - strand, within Psyr_0043at 44.290 kb on - strand, within Psyr_0043at 44.290 kb on - strand, within Psyr_0043at 44.290 kb on - strand, within Psyr_0043at 44.290 kb on - strand, within Psyr_0043at 44.383 kb on - strand, within Psyr_0043at 44.385 kb on + strand, within Psyr_0043at 44.385 kb on + strand, within Psyr_0043at 44.386 kb on - strand, within Psyr_0043at 44.445 kb on + strand, within Psyr_0043at 44.445 kb on + strand, within Psyr_0043at 44.445 kb on + strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.446 kb on - strand, within Psyr_0043at 44.466 kb on + strand, within Psyr_0043at 44.574 kb on + strand, within Psyr_0043at 44.574 kb on + strand, within Psyr_0043at 44.575 kb on - strand, within Psyr_0043at 44.575 kb on - strand, within Psyr_0043at 44.607 kb on + strand, within Psyr_0043at 44.897 kb on + strand, within Psyr_0043at 44.898 kb on - strand, within Psyr_0043at 44.919 kb on + strand, within Psyr_0043at 44.919 kb on + strand, within Psyr_0043at 44.920 kb on - strand, within Psyr_0043

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Aminobutyric (C)
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42,659 + +0.4
42,660 - +1.2
42,798 - Psyr_0040 0.23 +0.9
42,798 - Psyr_0040 0.23 -0.4
42,935 - Psyr_0040 0.55 +0.2
42,963 + Psyr_0040 0.61 +0.7
42,963 + Psyr_0040 0.61 +1.2
42,963 + Psyr_0040 0.61 +0.4
42,963 + Psyr_0040 0.61 +0.4
42,963 + Psyr_0040 0.61 -0.5
42,963 + Psyr_0040 0.61 -0.7
42,963 + Psyr_0040 0.61 +0.7
42,964 - Psyr_0040 0.62 -1.3
42,964 - Psyr_0040 0.62 +0.9
42,964 - Psyr_0040 0.62 +0.4
43,114 + +1.3
43,114 + +1.2
43,114 + +0.1
43,114 + -0.2
43,115 - -0.3
43,115 - +1.0
43,115 - -1.9
43,115 - -0.6
43,115 - +1.8
43,115 - -0.4
43,169 + +2.1
43,169 + +0.4
43,170 - -0.5
43,170 - +0.1
43,178 + +0.4
43,178 + -1.3
43,178 + +0.4
43,178 + +0.3
43,178 + +0.4
43,178 + -0.1
43,178 + +1.0
43,179 - +0.4
43,179 - +0.9
43,179 - -2.3
43,180 + -0.8
43,180 + -0.8
43,180 + +0.2
43,180 + -0.3
43,181 - +1.4
43,181 - -0.5
43,181 - +0.8
43,230 + +0.4
43,230 + -0.7
43,260 - +0.1
43,374 + Psyr_0041 0.54 -2.1
43,374 + Psyr_0041 0.54 -1.0
43,375 - Psyr_0041 0.54 -0.1
43,394 + Psyr_0041 0.62 -0.5
43,461 + -2.3
43,461 + -0.4
43,461 + +1.4
43,461 + -1.1
43,461 + +2.0
43,461 + -0.6
43,461 + +0.5
43,461 + -1.2
43,461 + +1.4
43,461 + -0.4
43,462 - -0.0
43,462 - -2.2
43,462 - +0.6
43,462 - +0.4
43,462 - +0.1
43,462 - -1.8
43,544 - Psyr_0042 0.13 +1.5
43,578 + Psyr_0042 0.20 +0.8
43,591 + Psyr_0042 0.22 -0.8
43,591 + Psyr_0042 0.22 +0.4
43,591 + Psyr_0042 0.22 -0.4
43,591 + Psyr_0042 0.22 +1.6
43,591 + Psyr_0042 0.22 +0.7
43,592 - Psyr_0042 0.22 -0.4
43,592 - Psyr_0042 0.22 -0.9
43,633 + Psyr_0042 0.31 +0.1
43,634 - Psyr_0042 0.31 +0.1
43,634 - Psyr_0042 0.31 -0.2
43,651 + Psyr_0042 0.35 -0.2
43,651 + Psyr_0042 0.35 -0.6
43,693 + Psyr_0042 0.43 -0.1
43,693 + Psyr_0042 0.43 +1.7
43,693 + Psyr_0042 0.43 -0.3
43,694 - Psyr_0042 0.43 -0.3
43,694 - Psyr_0042 0.43 -0.9
43,694 - Psyr_0042 0.43 -2.2
43,694 - Psyr_0042 0.43 -1.9
43,694 - Psyr_0042 0.43 -0.2
43,694 - Psyr_0042 0.43 -0.3
43,694 - Psyr_0042 0.43 +2.7
43,699 + Psyr_0042 0.44 -0.3
43,699 + Psyr_0042 0.44 -0.2
43,704 + Psyr_0042 0.45 +0.1
43,704 + Psyr_0042 0.45 +1.7
43,704 + Psyr_0042 0.45 +0.4
43,704 + Psyr_0042 0.45 +0.7
43,704 + Psyr_0042 0.45 +0.4
43,705 - Psyr_0042 0.46 -1.5
43,705 - Psyr_0042 0.46 -1.3
43,705 - Psyr_0042 0.46 +0.7
43,705 - Psyr_0042 0.46 +1.4
43,705 - Psyr_0042 0.46 -1.2
43,741 + Psyr_0042 0.53 -0.7
43,741 + Psyr_0042 0.53 +0.7
43,753 + Psyr_0042 0.55 +0.2
43,753 + Psyr_0042 0.55 -0.1
43,753 + Psyr_0042 0.55 -0.8
43,753 + Psyr_0042 0.55 +1.4
43,753 + Psyr_0042 0.55 +0.8
43,754 - Psyr_0042 0.56 -0.5
43,754 - Psyr_0042 0.56 +0.2
43,878 + Psyr_0042 0.81 -0.0
43,878 + Psyr_0042 0.81 +0.1
43,878 + Psyr_0042 0.81 +0.6
43,878 + Psyr_0042 0.81 -0.5
43,879 - Psyr_0042 0.81 -0.9
43,879 - Psyr_0042 0.81 -0.2
43,879 - Psyr_0042 0.81 +0.6
43,879 - Psyr_0042 0.81 -0.6
43,879 - Psyr_0042 0.81 -1.3
43,942 + +0.1
43,966 - +1.4
43,966 - +1.1
43,984 + +0.9
43,984 + -0.6
44,088 + -1.2
44,088 + -1.2
44,088 + +0.1
44,091 + -1.6
44,092 - -0.6
44,092 - +0.2
44,268 + Psyr_0043 0.25 -0.7
44,269 - Psyr_0043 0.25 -0.7
44,289 + Psyr_0043 0.27 -1.9
44,289 + Psyr_0043 0.27 -1.3
44,289 + Psyr_0043 0.27 +0.9
44,289 + Psyr_0043 0.27 +0.4
44,289 + Psyr_0043 0.27 -0.2
44,289 + Psyr_0043 0.27 +0.1
44,290 - Psyr_0043 0.27 +0.7
44,290 - Psyr_0043 0.27 +0.4
44,290 - Psyr_0043 0.27 +0.4
44,290 - Psyr_0043 0.27 +0.2
44,290 - Psyr_0043 0.27 -0.9
44,290 - Psyr_0043 0.27 +1.0
44,383 - Psyr_0043 0.36 -3.8
44,385 + Psyr_0043 0.36 -1.9
44,385 + Psyr_0043 0.36 +0.8
44,386 - Psyr_0043 0.36 +1.4
44,445 + Psyr_0043 0.42 +1.6
44,445 + Psyr_0043 0.42 -0.6
44,445 + Psyr_0043 0.42 -0.2
44,446 - Psyr_0043 0.42 +1.4
44,446 - Psyr_0043 0.42 -1.6
44,446 - Psyr_0043 0.42 -0.8
44,446 - Psyr_0043 0.42 -1.1
44,446 - Psyr_0043 0.42 -0.7
44,446 - Psyr_0043 0.42 -0.0
44,446 - Psyr_0043 0.42 +0.4
44,446 - Psyr_0043 0.42 -0.9
44,466 + Psyr_0043 0.44 +0.9
44,574 + Psyr_0043 0.54 -0.3
44,574 + Psyr_0043 0.54 +0.7
44,575 - Psyr_0043 0.54 -0.6
44,575 - Psyr_0043 0.54 -0.8
44,607 + Psyr_0043 0.57 +2.0
44,897 + Psyr_0043 0.85 +0.1
44,898 - Psyr_0043 0.85 -1.1
44,919 + Psyr_0043 0.87 +0.8
44,919 + Psyr_0043 0.87 -0.4
44,920 - Psyr_0043 0.87 -1.1

Or see this region's nucleotide sequence