Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23860

Experiment: nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23855 and BWI76_RS23860 are separated by 190 nucleotidesBWI76_RS23860 and BWI76_RS23865 are separated by 186 nucleotidesBWI76_RS23865 and BWI76_RS23870 are separated by 60 nucleotides BWI76_RS23855: BWI76_RS23855 - 6-phospho-beta-glucosidase, at 4,977,365 to 4,978,798 _RS23855 BWI76_RS23860: BWI76_RS23860 - protein disulfide oxidoreductase, at 4,978,989 to 4,979,480 _RS23860 BWI76_RS23865: BWI76_RS23865 - NAD(P)-dependent oxidoreductase, at 4,979,667 to 4,980,410 _RS23865 BWI76_RS23870: BWI76_RS23870 - Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data), at 4,980,471 to 4,983,344 _RS23870 Position (kb) 4978 4979 4980Strain fitness (log2 ratio) -2 -1 0 1at 4978.026 kb on + strand, within BWI76_RS23855at 4978.046 kb on + strand, within BWI76_RS23855at 4978.173 kb on + strand, within BWI76_RS23855at 4978.205 kb on + strand, within BWI76_RS23855at 4978.223 kb on - strand, within BWI76_RS23855at 4978.268 kb on - strand, within BWI76_RS23855at 4978.352 kb on + strand, within BWI76_RS23855at 4978.452 kb on - strand, within BWI76_RS23855at 4978.618 kb on + strand, within BWI76_RS23855at 4978.636 kb on - strand, within BWI76_RS23855at 4978.672 kb on - strandat 4978.686 kb on + strandat 4978.834 kb on - strandat 4979.169 kb on + strand, within BWI76_RS23860at 4979.524 kb on + strandat 4979.556 kb on - strandat 4979.580 kb on + strandat 4979.590 kb on + strandat 4979.598 kb on - strandat 4979.606 kb on - strandat 4979.844 kb on + strand, within BWI76_RS23865at 4980.004 kb on + strand, within BWI76_RS23865at 4980.012 kb on - strand, within BWI76_RS23865at 4980.038 kb on + strand, within BWI76_RS23865at 4980.154 kb on + strand, within BWI76_RS23865at 4980.162 kb on - strand, within BWI76_RS23865at 4980.213 kb on + strand, within BWI76_RS23865at 4980.309 kb on - strand, within BWI76_RS23865at 4980.309 kb on - strand, within BWI76_RS23865at 4980.339 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 20 mM
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4,978,026 + BWI76_RS23855 0.46 -0.2
4,978,046 + BWI76_RS23855 0.47 -2.0
4,978,173 + BWI76_RS23855 0.56 -0.1
4,978,205 + BWI76_RS23855 0.59 -0.1
4,978,223 - BWI76_RS23855 0.60 -1.3
4,978,268 - BWI76_RS23855 0.63 -0.4
4,978,352 + BWI76_RS23855 0.69 +0.1
4,978,452 - BWI76_RS23855 0.76 -0.8
4,978,618 + BWI76_RS23855 0.87 -0.4
4,978,636 - BWI76_RS23855 0.89 -0.3
4,978,672 - -1.4
4,978,686 + +0.6
4,978,834 - -0.3
4,979,169 + BWI76_RS23860 0.37 -1.3
4,979,524 + +0.2
4,979,556 - +1.0
4,979,580 + +0.4
4,979,590 + -0.1
4,979,598 - -0.6
4,979,606 - -0.1
4,979,844 + BWI76_RS23865 0.24 -0.4
4,980,004 + BWI76_RS23865 0.45 -2.5
4,980,012 - BWI76_RS23865 0.46 +0.0
4,980,038 + BWI76_RS23865 0.50 +0.6
4,980,154 + BWI76_RS23865 0.65 -0.7
4,980,162 - BWI76_RS23865 0.67 -0.3
4,980,213 + BWI76_RS23865 0.73 +0.4
4,980,309 - BWI76_RS23865 0.86 -0.9
4,980,309 - BWI76_RS23865 0.86 +0.9
4,980,339 - +0.2

Or see this region's nucleotide sequence