Experiment: nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14870 and BWI76_RS14875 overlap by 1 nucleotides BWI76_RS14875 and BWI76_RS14880 are separated by 673 nucleotides
BWI76_RS14870: BWI76_RS14870 - hypothetical protein, at 3,115,338 to 3,116,705
_RS14870
BWI76_RS14875: BWI76_RS14875 - ribokinase-like domain-containing protein, at 3,116,705 to 3,117,649
_RS14875
BWI76_RS14880: BWI76_RS14880 - putative fructose-bisphosphate aldolase, class 1, at 3,118,323 to 3,119,111
_RS14880
Position (kb)
3116
3117
3118 Strain fitness (log2 ratio)
-2
-1
0
1 at 3116.071 kb on - strand, within BWI76_RS14870 at 3117.068 kb on + strand, within BWI76_RS14875 at 3117.093 kb on - strand, within BWI76_RS14875 at 3117.485 kb on - strand, within BWI76_RS14875 at 3117.487 kb on + strand, within BWI76_RS14875 at 3117.583 kb on + strand at 3117.599 kb on + strand at 3117.636 kb on + strand at 3117.644 kb on - strand at 3117.644 kb on - strand at 3117.681 kb on - strand at 3117.847 kb on + strand at 3117.847 kb on - strand at 3117.859 kb on - strand at 3117.893 kb on - strand at 3117.933 kb on - strand at 3117.942 kb on + strand at 3117.950 kb on + strand at 3117.950 kb on - strand at 3117.952 kb on + strand at 3117.957 kb on + strand at 3117.957 kb on + strand at 3117.958 kb on - strand at 3117.965 kb on - strand at 3117.982 kb on + strand at 3117.983 kb on + strand at 3118.050 kb on - strand at 3118.085 kb on + strand at 3118.094 kb on - strand at 3118.105 kb on + strand at 3118.105 kb on + strand at 3118.105 kb on + strand at 3118.113 kb on - strand at 3118.127 kb on - strand at 3118.245 kb on + strand at 3118.245 kb on + strand at 3118.254 kb on + strand at 3118.321 kb on - strand at 3118.386 kb on - strand at 3118.390 kb on - strand at 3118.444 kb on + strand, within BWI76_RS14880 at 3118.477 kb on - strand, within BWI76_RS14880 at 3118.477 kb on - strand, within BWI76_RS14880 at 3118.477 kb on - strand, within BWI76_RS14880 at 3118.477 kb on - strand, within BWI76_RS14880 at 3118.479 kb on + strand, within BWI76_RS14880 at 3118.479 kb on + strand, within BWI76_RS14880 at 3118.536 kb on + strand, within BWI76_RS14880 at 3118.544 kb on - strand, within BWI76_RS14880 at 3118.544 kb on - strand, within BWI76_RS14880 at 3118.557 kb on - strand, within BWI76_RS14880 at 3118.635 kb on + strand, within BWI76_RS14880 at 3118.643 kb on - strand, within BWI76_RS14880
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 20 mM remove 3,116,071 - BWI76_RS14870 0.54 -1.5 3,117,068 + BWI76_RS14875 0.38 -0.3 3,117,093 - BWI76_RS14875 0.41 -0.6 3,117,485 - BWI76_RS14875 0.83 +0.6 3,117,487 + BWI76_RS14875 0.83 +0.1 3,117,583 + -0.9 3,117,599 + +0.2 3,117,636 + -0.1 3,117,644 - -0.8 3,117,644 - -0.4 3,117,681 - -1.9 3,117,847 + -0.3 3,117,847 - -0.6 3,117,859 - -0.4 3,117,893 - -2.2 3,117,933 - -0.9 3,117,942 + +0.0 3,117,950 + -1.1 3,117,950 - -0.7 3,117,952 + -0.7 3,117,957 + -0.3 3,117,957 + -0.6 3,117,958 - -2.6 3,117,965 - -0.1 3,117,982 + +0.4 3,117,983 + -0.9 3,118,050 - +1.3 3,118,085 + -0.2 3,118,094 - -0.6 3,118,105 + -0.5 3,118,105 + -0.1 3,118,105 + -1.0 3,118,113 - +0.5 3,118,127 - -0.9 3,118,245 + -1.6 3,118,245 + -0.1 3,118,254 + +0.1 3,118,321 - +0.0 3,118,386 - +0.3 3,118,390 - +0.6 3,118,444 + BWI76_RS14880 0.15 +0.9 3,118,477 - BWI76_RS14880 0.20 -1.9 3,118,477 - BWI76_RS14880 0.20 -1.1 3,118,477 - BWI76_RS14880 0.20 +0.7 3,118,477 - BWI76_RS14880 0.20 +1.1 3,118,479 + BWI76_RS14880 0.20 -0.7 3,118,479 + BWI76_RS14880 0.20 +0.6 3,118,536 + BWI76_RS14880 0.27 -1.5 3,118,544 - BWI76_RS14880 0.28 +0.3 3,118,544 - BWI76_RS14880 0.28 +1.5 3,118,557 - BWI76_RS14880 0.30 -0.1 3,118,635 + BWI76_RS14880 0.40 -0.3 3,118,643 - BWI76_RS14880 0.41 -0.7
Or see this region's nucleotide sequence