Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14875

Experiment: nitrite 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS14870 and BWI76_RS14875 overlap by 1 nucleotidesBWI76_RS14875 and BWI76_RS14880 are separated by 673 nucleotides BWI76_RS14870: BWI76_RS14870 - hypothetical protein, at 3,115,338 to 3,116,705 _RS14870 BWI76_RS14875: BWI76_RS14875 - ribokinase-like domain-containing protein, at 3,116,705 to 3,117,649 _RS14875 BWI76_RS14880: BWI76_RS14880 - putative fructose-bisphosphate aldolase, class 1, at 3,118,323 to 3,119,111 _RS14880 Position (kb) 3116 3117 3118Strain fitness (log2 ratio) -2 -1 0 1at 3116.071 kb on - strand, within BWI76_RS14870at 3117.068 kb on + strand, within BWI76_RS14875at 3117.093 kb on - strand, within BWI76_RS14875at 3117.485 kb on - strand, within BWI76_RS14875at 3117.487 kb on + strand, within BWI76_RS14875at 3117.583 kb on + strandat 3117.599 kb on + strandat 3117.636 kb on + strandat 3117.644 kb on - strandat 3117.644 kb on - strandat 3117.681 kb on - strandat 3117.847 kb on + strandat 3117.847 kb on - strandat 3117.859 kb on - strandat 3117.893 kb on - strandat 3117.933 kb on - strandat 3117.942 kb on + strandat 3117.950 kb on + strandat 3117.950 kb on - strandat 3117.952 kb on + strandat 3117.957 kb on + strandat 3117.957 kb on + strandat 3117.958 kb on - strandat 3117.965 kb on - strandat 3117.982 kb on + strandat 3117.983 kb on + strandat 3118.050 kb on - strandat 3118.085 kb on + strandat 3118.094 kb on - strandat 3118.105 kb on + strandat 3118.105 kb on + strandat 3118.105 kb on + strandat 3118.113 kb on - strandat 3118.127 kb on - strandat 3118.245 kb on + strandat 3118.245 kb on + strandat 3118.254 kb on + strandat 3118.321 kb on - strandat 3118.386 kb on - strandat 3118.390 kb on - strandat 3118.444 kb on + strand, within BWI76_RS14880at 3118.477 kb on - strand, within BWI76_RS14880at 3118.477 kb on - strand, within BWI76_RS14880at 3118.477 kb on - strand, within BWI76_RS14880at 3118.477 kb on - strand, within BWI76_RS14880at 3118.479 kb on + strand, within BWI76_RS14880at 3118.479 kb on + strand, within BWI76_RS14880at 3118.536 kb on + strand, within BWI76_RS14880at 3118.544 kb on - strand, within BWI76_RS14880at 3118.544 kb on - strand, within BWI76_RS14880at 3118.557 kb on - strand, within BWI76_RS14880at 3118.635 kb on + strand, within BWI76_RS14880at 3118.643 kb on - strand, within BWI76_RS14880

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 20 mM
remove
3,116,071 - BWI76_RS14870 0.54 -1.5
3,117,068 + BWI76_RS14875 0.38 -0.3
3,117,093 - BWI76_RS14875 0.41 -0.6
3,117,485 - BWI76_RS14875 0.83 +0.6
3,117,487 + BWI76_RS14875 0.83 +0.1
3,117,583 + -0.9
3,117,599 + +0.2
3,117,636 + -0.1
3,117,644 - -0.8
3,117,644 - -0.4
3,117,681 - -1.9
3,117,847 + -0.3
3,117,847 - -0.6
3,117,859 - -0.4
3,117,893 - -2.2
3,117,933 - -0.9
3,117,942 + +0.0
3,117,950 + -1.1
3,117,950 - -0.7
3,117,952 + -0.7
3,117,957 + -0.3
3,117,957 + -0.6
3,117,958 - -2.6
3,117,965 - -0.1
3,117,982 + +0.4
3,117,983 + -0.9
3,118,050 - +1.3
3,118,085 + -0.2
3,118,094 - -0.6
3,118,105 + -0.5
3,118,105 + -0.1
3,118,105 + -1.0
3,118,113 - +0.5
3,118,127 - -0.9
3,118,245 + -1.6
3,118,245 + -0.1
3,118,254 + +0.1
3,118,321 - +0.0
3,118,386 - +0.3
3,118,390 - +0.6
3,118,444 + BWI76_RS14880 0.15 +0.9
3,118,477 - BWI76_RS14880 0.20 -1.9
3,118,477 - BWI76_RS14880 0.20 -1.1
3,118,477 - BWI76_RS14880 0.20 +0.7
3,118,477 - BWI76_RS14880 0.20 +1.1
3,118,479 + BWI76_RS14880 0.20 -0.7
3,118,479 + BWI76_RS14880 0.20 +0.6
3,118,536 + BWI76_RS14880 0.27 -1.5
3,118,544 - BWI76_RS14880 0.28 +0.3
3,118,544 - BWI76_RS14880 0.28 +1.5
3,118,557 - BWI76_RS14880 0.30 -0.1
3,118,635 + BWI76_RS14880 0.40 -0.3
3,118,643 - BWI76_RS14880 0.41 -0.7

Or see this region's nucleotide sequence