Experiment: nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06455 and BWI76_RS06460 overlap by 4 nucleotides BWI76_RS06460 and BWI76_RS06465 are separated by 153 nucleotides BWI76_RS06465 and BWI76_RS06470 are separated by 45 nucleotides BWI76_RS06470 and BWI76_RS06475 are separated by 295 nucleotides
BWI76_RS06455: BWI76_RS06455 - 3-oxosteroid 1-dehydrogenase, at 1,356,457 to 1,358,133
_RS06455
BWI76_RS06460: BWI76_RS06460 - shikimate dehydrogenase, at 1,358,130 to 1,358,951
_RS06460
BWI76_RS06465: BWI76_RS06465 - IclR family transcriptional regulator, at 1,359,105 to 1,359,863
_RS06465
BWI76_RS06470: BWI76_RS06470 - hypothetical protein, at 1,359,909 to 1,360,241
_RS06470
BWI76_RS06475: BWI76_RS06475 - protoheme IX farnesyltransferase, at 1,360,537 to 1,361,424
_RS06475
Position (kb) 1359
1360 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1358.107 kb on - strand at 1358.214 kb on + strand, within BWI76_RS06460 at 1358.222 kb on - strand, within BWI76_RS06460 at 1358.255 kb on - strand, within BWI76_RS06460 at 1358.275 kb on + strand, within BWI76_RS06460 at 1358.498 kb on + strand, within BWI76_RS06460 at 1358.530 kb on - strand, within BWI76_RS06460 at 1358.747 kb on + strand, within BWI76_RS06460 at 1359.362 kb on - strand, within BWI76_RS06465 at 1359.378 kb on - strand, within BWI76_RS06465 at 1359.499 kb on + strand, within BWI76_RS06465 at 1360.033 kb on - strand, within BWI76_RS06470 at 1360.147 kb on + strand, within BWI76_RS06470 at 1360.190 kb on + strand, within BWI76_RS06470 at 1360.277 kb on + strand at 1360.277 kb on + strand at 1360.277 kb on + strand at 1360.287 kb on - strand at 1360.287 kb on - strand at 1360.305 kb on - strand at 1360.305 kb on - strand at 1360.313 kb on - strand at 1360.546 kb on - strand at 1360.575 kb on + strand at 1360.842 kb on + strand, within BWI76_RS06475
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 20 mM remove 1,358,107 - -1.1 1,358,214 + BWI76_RS06460 0.10 +0.1 1,358,222 - BWI76_RS06460 0.11 -0.4 1,358,255 - BWI76_RS06460 0.15 +0.5 1,358,275 + BWI76_RS06460 0.18 -0.1 1,358,498 + BWI76_RS06460 0.45 -2.7 1,358,530 - BWI76_RS06460 0.49 +0.0 1,358,747 + BWI76_RS06460 0.75 +0.4 1,359,362 - BWI76_RS06465 0.34 +3.8 1,359,378 - BWI76_RS06465 0.36 -0.3 1,359,499 + BWI76_RS06465 0.52 -1.3 1,360,033 - BWI76_RS06470 0.37 -1.0 1,360,147 + BWI76_RS06470 0.71 -0.3 1,360,190 + BWI76_RS06470 0.84 -1.5 1,360,277 + -0.4 1,360,277 + +0.5 1,360,277 + -0.0 1,360,287 - -0.9 1,360,287 - +0.6 1,360,305 - -0.4 1,360,305 - -0.8 1,360,313 - -0.1 1,360,546 - -0.9 1,360,575 + -0.1 1,360,842 + BWI76_RS06475 0.34 -0.7
Or see this region's nucleotide sequence